An evolving network model with modular growth

In this paper, we propose an evolving network model growing fast in units of module, according to the analysis of the evolution characteristics in real complex networks. Each module is a small-world network containing several interconnected nodes and the nodes between the modules are linked by preferential attachment on degree of nodes. We study the modularity measure of the proposed model, which can be adjusted by changing the ratio of the number of inner-module edges and the number of inter-module edges. In view of the mean-field theory, we develop an analytical function of the degree distribution, which is verified by a numerical example and indicates that the degree distribution shows characteristics of the small-world network and the scale-free network distinctly at different segments. The clustering coefficient and the average path length of the network are simulated numerically, indicating that the network shows the small-world property and is affected little by the randomness of the new module.     

Evolution of a protein domain interaction network

In this paper, we attempt to understand complex network evolution from the underlying evolutionary relationship between biological organisms. Firstly, we construct a Pfam domain interaction network for each of the 470 completely sequenced organisms, and therefore each organism is correlated with a specific Pfam domain interaction network; secondly, we infer the evolutionary relationship of these organisms with the nearest neighbour joining method; thirdly, we use the evolutionary relationship between organisms constructed in the second step as the evolutionary course of the Pfam domain interaction network constructed in the first step. This analysis of the evolutionary course shows: (i) there is a conserved sub-network structure in network evolution; in this sub-network, nodes with lower degree prefer to maintain their connectivity invariant, and hubs tend to maintain their role as a hub is attached preferentially to new added nodes; (ii) few nodes are conserved as hubs; most of the other nodes are conserved as one with very low degree; (iii) in the course of network evolution, new nodes are added to the network either individually in most cases or as clusters with relative high clustering coefficients in a very few cases.     

Evolution of Chinese airport network

With the rapid development of the economy and the accelerated globalization process, the aviation industry plays a more and more critical role in today’s world, in both developed and developing countries. As the infrastructure of aviation industry, the airport network is one of the most important indicators of economic growth. In this paper, we investigate the evolution of the Chinese airport network (CAN) via complex network theory. It is found that although the topology of CAN has remained steady during the past few years, there are many dynamic switchings inside the network, which have changed the relative importance of airports and airlines. Moreover, we investigate the evolution of traffic flow (passengers and cargoes) on CAN. It is found that the traffic continues to grow in an exponential form and has evident seasonal fluctuations. We also found that cargo traffic and passenger traffic are positively related but the correlations are quite different for different kinds of cities.     

基于Web 2.0的边与节点同时增长网络模型

模拟了Web2.0网络的发展过程并研究其拓扑结构,分析某门户网站实际博客数据的度分布、节点度时间变化,发现与先前的无标度网络模型有所差别.根据真实网络的生长特点,提出了边与节点同时增长的网络模型,包括随机连接及近邻互联的网络构造规则.仿真研究表明,模拟的网络更接近实际,在没有优先连接过程时,模型能得到幂率的度分布;并且网络有更大的聚类系数以及正的度相关性。     

基于在线社交网络的信息传播模型

本文构造了一个基于在线社交网络的信息传播模型.该模型考虑了节点度和传播机理的影响,结合复杂网络和传染病动力学理论,进一步建立了动力学演化方程组.该方程组刻画了不同类型节点随着时间的演化关系,反映了传播动力学过程受到网络拓扑结构和传播机理的影响.本文模拟了在线社交网络中的信息传播过程,并分析了不同类型节点在网络中的行为规律.仿真结果表明:由于在线社交网络的高度连通性,信息在网络中传播的门槛几乎为零;初始传播节点的度越大,信息越容易在网络中迅速传播;中心节点具有较大的社会影响力;具有不同度数的节点在网络中的变 关键词： 在线社交网络 信息传播 微分方程 传染病动力学     

中国城市航空网络的实证研究与分析

以城市为节点，城市间直航线路为边，实证地研究了中国城市航空网络的拓扑性质.研究表明，中国城市航空网络是一个小世界网络，具有短的平均路径长度和大的簇系数，且其度分布服从双段幂律分布.它的度度相关性质与世界航空网络和北美航空网络都不相同.当度较小时，世界航空网络和北美航空网络都是正相关的，但中国城市航空网络未表现出度度相关性；而对于度较大的节点，世界航空网络中其邻点平均度几乎是一个常值，但中国城市航空网络却呈现出负相关性.以往的实证研究暗示，节点具有明确几何位置的网络，如计算机互联网、电力网络等，不表现层次性.但是中国城市航空网络展现出明显的层次性，表明地理因素对其结构演化的影响并不强烈.进一步地，以城市间直航计划每周提供的座位数为边权，研究了网络的含权性质，发现该网络节点度权之间是幂律相关的，相关指数为1.37.     

Urban road network evolution mechanism based on the ‘direction preferred connection’ and ‘degree constraint’

The urban road network is a complex system that exhibits the properties of self-organization and emergence. Recent theoretical and empirical studies have mainly focused on the structural properties of the urban road networks. This research concentrates on some important parameters such as degree, average degree, meshedness coefficient, betweeness, etc. These parameters of the real road network exhibit specific statistical properties. Some studies show that perhaps these specific statistical properties are caused by a compromise mechanism of the formation of a minimum spanning tree and the greedy triangulation. Inspired by these results, we propose a principle to construct the network (we call it a MG network in this paper) whose structure is located between the minimum spanning tree and the greedy triangulation at first. The structural properties of the MG network are analyzed. We find the formation mechanism of the MG network cannot explain the urban road network evolution well. Then, based on the formation mechanism of the MG network, we add the ‘direction preferred connection’ and ‘degree constraint’ principles to the urban road network evolution simulation process. The result of the simulation network turns out to be a planar network that is in accordance with reality. Compared with the real road network’s structural properties, we find the simulation results are so consistent with it. It indicates the validation of the model and also demonstrates perhaps the ‘direction preferred connection’ and ‘degree constraint’ principle can explain the urban road network evolution better.     

Network dilution and asymmetry in an efficient brain

ABSTRACT

The ultimate goal of neuroscience is to ultimately understand how the brain functions. The advancement of brain imaging shows us how the brain continuously alternates complex activity patterns and experimentally reveals how these patterns are responsible for memory, association, reasoning, and countless other tasks. Two fundamental parameters, dilution (the number of connections per node), and symmetry (the number of bidirectional connections of the same weight) characterise two fundamental features underlying the networks that connect the single neurons in the brain and generate these patterns. Mammalian brains show large variations of dilution, and mostly asymmetric connectivity, unfortunately the advantages which drove evolution to these state of network dilution and asymmetry are still unknown. Here, we studied the effects of symmetry and dilution on a discrete-time recurrent neural network with McCulloch–Pitts neurons. We use an exhaustive approach, in which we probe all possible inputs for several randomly connected neuron networks with different degrees of dilution and symmetry. We find an optimum value for the synaptic dilution and symmetry, which turns out to be in striking quantitative agreement with what previous researchers have found in the brain cortex, neocortex and hippocampus. The diluted asymmetric brain shows high memory capacity and pattern recognition speed, but most of all it is the less energy-consumptive with respect to fully connected and symmetric network topologies.     

Graph dynamical networks for forecasting collective behavior of active matter

After decades of theoretical studies, the rich phase states of active matter and cluster kinetic processes are still of research interest. How to efficiently calculate the dynamical processes under their complex conditions becomes an open problem. Recently, machine learning methods have been proposed to predict the degree of coherence of active matter systems. In this way, the phase transition process of the system is quantified and studied. In this paper, we use graph network as a powerful model to determine the evolution of active matter with variable individual velocities solely based on the initial position and state of the particles. The graph network accurately predicts the order parameters of the system in different scale models with different individual velocities, noise and density to effectively evaluate the effect of diverse condition. Compared with the classical physical deduction method, we demonstrate that graph network prediction is excellent, which could save significantly computing resources and time. In addition to active matter, our method can be applied widely to other large-scale physical systems.     

Influence of the variance of degree distributions on the evolution of cooperation in complex networks

We study how initial network structure affects the evolution of cooperation in a spatial prisoner’s dilemma game. The network structure is characterized by various statistical properties. Among those properties, we focus on the variance of the degree distribution, and inquire how it affects the evolution of cooperation by three methods of imitation. For every method, it was found that a scale-free network does not always promote the evolution of cooperation, and that there exists an appropriate value of the variance, at which cooperation is optimal.     

The bounds of heavy-tailed return distributions in evolving complex networks

We consider the evolution of scale-free networks according to preferential attachment schemes and show the conditions for which the exponent characterizing the degree distribution is bounded by upper and lower values. Our framework is an agent model, presented in the context of economic networks of trades, which shows the emergence of critical behavior. Starting from a brief discussion about the main features of the evolving network of trades, we show that the logarithmic return distributions have bounded heavy tails, and the corresponding bounding exponent values can be derived. Finally, we discuss these findings in the context of model risk.     

Network analysis of an online community

We empirically study various network properties of an online community. The numbers of articles written by each user to the bulletin boards of each of the others are used to construct the directed and weighted network B, and gifting behaviors among users are also kept track of, to build the network G which is again directed and weighted. Detailed analysis reveals that B and G have very different network properties. In particular, whereas B contains many more bidirectional links than directed arcs, G shows the opposite characteristic. The number of writings on bulletin boards is found to decay with the distance from the hub vertex, which reflects the structural assortativeness in B. We also observe that the activities in writings and purchases are negatively correlated with each other for highly active users in B.     

Correlations and clustering in a scale-free network in Euclidean space

Empirical study shows that many real networks in nature and society share two generic properties: they are scale-free and they display a high degree of clustering. Quite often they are modular in nature also, implying occurrences of several small tightly linked groups which are connected in a hierarchical manner among themselves. Recently, we have introduced a model of spatial scale-free network where nodes pop-up at randomly located positions in the Euclidean space and are connected to one end of the nearest link of the existing network. It has been already argued that the large scale behaviour of this network is like the Barabási-Albert model. In the present paper we briefly review these results as well as present additional results on the study of non-trivial correlations present in this model which are found to have similar behaviours as in the real-world networks. Moreover, this model naturally possesses the hierarchical characteristics lacked by most of the models of the scale-free networks.      

有倾向性重连产生的反匹配网络

在具有网络结构的系统中度关联属性对于动力学行为具有重要的影响, 所以产生适当度关联网络的方法对于大量网络系统的研究具有重要的作用. 尽管产生正匹配网络的方法已经得到很好的验证, 但是产生反匹配网络的方法还没有被系统的讨论过. 重新连接网络中的边是产生度关联网络的一个常用方法. 这里我们研究使用重连方法产生反匹配无标度网络的有效性. 我们的研究表明, 有倾向的重连可以增强网络的反匹配属性. 但是有倾向重连不能使皮尔森度相关系数下降到-1, 而是存在一个依赖于网络参数的最小值. 我们研究了网络的主要参数对于网络度相关系数的影响, 包括网络尺寸, 网络的连接密度和网络节点的度差异程度. 研究表明在网络尺寸大的情况下和节点度差异性强的情况下, 重连的效果较差. 我们研究了真实Internet网络, 发现模型产生的网络经过重连不能达到真实网络的度关联系数.     

两相流有限穿越可视图演化动力学研究

针对小管径两相流流动特性, 全新优化设计弧形对壁式电导传感器. 通过动态实验在获取传感器测量信号的基础上, 采用有限穿越可视图理论构建对应于不同流型的两相流复杂网络. 通过分析发现, 有限穿越可视图网络异速生长指数和网络平均度值的联合分布可实现对小管径两相流的流型辨识; 有限穿越可视图度分布曲线峰值可有效刻画与泡径大小分布相关的流动物理结构细节特征; 网络平均度值可表征流动结构的宏观特性; 网络异速生长指数对流体动力学复杂性十分敏感, 可揭示不同流型演化过程中的细节演化动力学特性. 两相流测量信号的有限穿越可视图分析为揭示两相流流型的形成及演化动力学机理提供了新途径. 关键词： 两相流 复杂网络 有限穿越可视图 网络异速生长指数     

A random walk evolution model of wireless sensor networks and virus spreading

In this paper, considering both cluster heads and sensor nodes, we propose a novel evolving a network model based on a random walk to study the fault tolerance decrease of wireless sensor networks (WSNs) due to node failure, and discuss the spreading dynamic behavior of viruses in the evolution model. A theoretical analysis shows that the WSN generated by such an evolution model not only has a strong fault tolerance, but also can dynamically balance the energy loss of the entire network. It is also found that although the increase of the density of cluster heads in the network reduces the network efficiency, it can effectively inhibit the spread of viruses. In addition, the heterogeneity of the network improves the network efficiency and enhances the virus prevalence. We confirm all the theoretical results with sufficient numerical simulations.     

度关联无标度网络上的有倾向随机行走

有倾向随机行走是研究网络上数据包路由策略的有效方法. 由于许多真实技术网络包括互联网都具有负的度关联特征, 因此本文研究这种网络上的有倾向随机行走性质. 研究表明: 在负关联网络上粒子可以在连接度较大的节点上均匀分布, 而连接度小的节点上粒子较少; 负关联网络上随机行走的速度比非关联网络更快; 找到了负关联网络上的最佳倾向性系数, 在此情况下负关联网络上随机行走的速度远快于非关联网络. 负关联网络既可以利用度小的节点容纳粒子, 又可以利用度大的节点快速传输, 这是负关联网络上高行走效率产生的机制.     

对等网络应用中的网络统计特征分析

本文基于实测数据抽象出用户网络与资源网络,探讨了对等网络中用户、资源及其内部的相互作用关系,发掘并分析了其内在的网络统计特征. 分析结果表明,用户节点度值及权值呈分段分布,体现了其各异的活跃性;网络资源的流行度差异明显,度值和权值近似呈幂律分布. 用户网络与资源网络存在分簇结构,少数簇中含大量节点,多数簇所含节点数量较少. 用户网络中,同簇内的用户有着相似的兴趣趋向,不同簇用户间兴趣趋向存在着差异,资源网络各簇中不同类别的资源间呈现出明显的关联性.     

具有双峰特性的双层超网络模型

随着社会经济的快速发展,社会成员及群体之间的关系呈现出了更复杂、更多元化的特点.超网络作为一种描述复杂多元关系的网络,已在不同领域中得到了广泛的应用.服从泊松度分布的随机网络是研究复杂网络的开创性模型之一,而在现有的超网络研究中,基于ER随机图的超网络模型尚属空白.本文首先在基于超图的超网络结构中引入ER随机图理论,提出了一种ER随机超网络模型,对超网络中的节点超度分布进行了理论分析,并通过计算机仿真了在不同超边连接概率条件下的节点超度分布情况,结果表明节点超度分布服从泊松分布,符合随机网络特征并且与理论推导相一致.进一步,为更准确有效地描述现实生活中的多层、异质关系,本文构建了节点超度分布具有双峰特性,层间采用随机方式连接,层内分别为ER-ER,BA-BA和BA-ER三种不同类型的双层超网络模型,理论分析得到了三种双层超网络节点超度分布的解析表达式,三种双层超网络在仿真实验中的节点超度分布均具有双峰特性.     

A Path-Based Distribution Measure for Network Comparison

As network data increases, it is more common than ever for researchers to analyze a set of networks rather than a single network and measure the difference between networks by developing a number of network comparison methods. Network comparison is able to quantify dissimilarity between networks by comparing the structural topological difference of networks. Here, we propose a kind of measures for network comparison based on the shortest path distribution combined with node centrality, capturing the global topological difference with local features. Based on the characterized path distributions, we define and compare network distance between networks to measure how dissimilar the two networks are, and the network entropy to characterize a typical network system. We find that the network distance is able to discriminate networks generated by different models. Combining more information on end nodes along a path can further amplify the dissimilarity of networks. The network entropy is able to detect tipping points in the evolution of synthetic networks. Extensive numerical simulations reveal the effectivity of the proposed measure in network reduction of multilayer networks, and identification of typical system states in temporal networks as well.