Characterisation of historical organic dyestuffs by liquid chromatography–mass spectrometry

This review discusses the characterisation of natural organic dyestuffs of historical interest by liquid chromatography–mass spectrometry. The structures of the most important natural organic dyestuffs traditionally used are presented and discussed from the perspective of their analytical chemical determination. The practical aspects of the determination of this inhomogeneous range of compounds with different structures, such as anthraquinones, flavonoids, indigoids or tannins, are discussed with their implications for sample preparation, liquid chromatographic separation and mass spectrometric detection. The particular focus of this review is the discussion of the mass spectral fragmentation patterns of the different classes of natural organic dyestuffs, which in the ideal case allow the identification of the dyestuff actually used, and thereby provide a key to the better characterisation and understanding of historical objects dyed with natural organic dyestuffs. Figure LC-MS allows characterisation of natural dyestuff constituents: the MS spectrum of alizarin is superimposed over a photo of a textile coloured using this red dye     

石墨烯化聚合物:一种兼具电子和离子传输通道的三维富碳高分子能源材料

近年来,用于电化学能源存储和转化的石墨烯材料,得到了研究者们越来越多的关注。但是,这些石墨烯材料不同于严格定义的单原子碳层结构,往往具有孔洞、杂原子和化学官能团等缺陷结构。由于制备方法的不同,缺陷结构各不相同,其电化学性能也表现各异。结构分析表明,这类材料是由类似石墨烯片段的单元与聚合物链共价连接而成,使其具有石墨烯和聚合物的双重特性,我们称之为石墨烯化聚合物。由小分子通过自下而上的方法制备的多孔聚合物,也可以通过进一步热交联等方法,使其形成包含石墨烯片段单元与聚合物链的化学结构。这些材料与石墨烯衍生材料一起组成了石墨烯化聚合物的整个谱系;这个谱系涵盖了由聚合物到石墨烯的过渡区。更重要的是,这类材料特殊的结构与性质,使其成为一种兼具电子和离子传输通道的三维富碳高分子材料,非常适合作为电极材料应用于电化学能源存储和转化,这为我们深入研究储能器件中电极材料的结构与性能的相关关系提供了很好的材料平台。     

Crystal-Chemical Classes of “Cambridge” Crystal Structures: Statistical Analysis of Topology

Crystals structures with organic carbon, i.e., organic and organometal compounds and coordination compounds with organic ligands are systematized based on the results of a statistical treatment of CSD (Cambridge Structural Database) data. The overwhelming majority of CSD structures are molecular crystals, which may be homomolecular or heteromolecular; the latter, in turn, are classified into molecular complexes, salts, crystal solvates, and crystal hydrates. Polymeric (nonmolecular) crystals occur much more rarely. For substances belonging to different crystal-chemical classes, distributions according to space groups and structural classes have been studied; considerable differences between the distributions have been found. In particular, it was established that chiral structures (with P2₁2₁2₁, P2₁, etc. symmetry) are met much more rarely among inorganic CSD structures with metals and metalloids than among organic structures consisting exclusively of organogen elements; the most striking examples are hydrates and salts containing Cl^–, Br^–, and I^– ions.     

Synthesis,structure, and magnetic properties of magnesium bis-3,6-di-<Emphasis Type="Italic">tert</Emphasis>-butyl-<Emphasis Type="Italic">о</Emphasis>-benzosemiquinonate complexes with N-donor ligands

A series of six-coordinate magnesium bis-3,6-di-tert-butyl-о-benzosemiquinonate complexes with different N-donor ligands (2,2´-dipyridyl, 1,10-phenanthroline, 2,9-dimethyl-1,10-phenanthroline, pyridine, N-phenyl-1-(4-pyridinyl)methanimine) were synthesized. The molecular and crystal structures of these complexes were determined by X-ray diffraction. In the complexes with bidentate N-donor ligands, the O,O-diolate o-semiquinone ligands are cis to each other, whereas the compounds with monodentate ligands contain organic radical anions in trans positions. The specific features of magnetic exchange coupling between organic radical ligands were studied by temperature-dependent magnetic susceptibility measurements.     

Fast,solvent-free synthesis of ferrocene-containing organic cages via dynamic covalent chemistry in the solid state

A simple, solvent-free synthetic protocol towards the synthesis of organic self-assembled macromolecules has been established. By employing mechanochemistry using glassware readily available to every organic chemist, we were able to synthesise three novel organic cage compounds exemplarily and to speed up the synthesis of a ferrocene-containing macrocycle by a factor of 288 compared to the solution-based synthesis. The structural investigation of the newly synthesised cages revealed different modes of connectivity from using ferrocene-containing aldehydes caused by the free rotation of the cyclopentadienyl units against each other. By extending the facile solvent-free synthesis to ball-milling, even compounds that show lower reactivity could be employed in the dynamic covalent formation of organometallic cage compounds. The presented protocol gives access to otherwise inaccessible structures, speeds up general synthetic workflows, and simultaneously reduces the environmental impact of supramolecular syntheses.

Using mechanochemistry and glassware readily available to every organic chemist, a simple, solvent-free synthetic protocol for self-assembled macromolecules containing ferrocenes is presented.     

Hybrid molecular nanostructures with donor-acceptor chains

We have fabricated hybrid molecular chain structures formed by electron acceptor compound 1 and electron donor molecules 2 and 3 at the liquid/solid interface of graphite surface.The structural details of the mono-component and the binary assemblies are revealed by high resolution scanning tunneling microscopy (STM).Compound 1 can form two well-ordered lamellar patterns at different concentrations.In the co-adsorption structures,compounds 2 and 3 can insert into the space between molecular chains of compound 1 and form large area well-ordered nanoscale phase separated lamellar structures.The unit cell parameters for the coassemblies can be "flexibly" adjusted to make the electron donors and acceptors perfectly match along the molecular chains.Scanning tunneling spectroscopy (STS) results indicate that the electronic properties of individual molecular donors and acceptors are preserved in the binary self-assembly.These results provide molecular insight into the nanoscale phase separation of organic electron acceptors and donors on surfaces and are helpful for the fabrication of surface supramolecular structures and molecular devices.     

The Design of Second-order Nonlinear Optical Dendrimers: From “Branch Only” to “Root Containing”

Dendrimers are considered as a promising family of organic second-order nonlinear optical (NLO) polymers because of their well-defined structures,easily modified peripheral functional groups,interior branches and central cores.In order to obtain NLO materials with high performance,dendrimer structures have been optimized in the past years,such as the "branch only" and the "root containing" type dendrimers.This feature article highlights the achievements in exploring the rational design of dendrimers,partially marked by their macroscopic NLO performance.     

2D "soap"-assembly of nanoparticles via colloid-induced condensation of mixed Langmuir monolayers of fatty surfactants

We describe a new type of colloidal 2D gels formed in mixed Langmuir monolayers of stearic acid and octadecylamine on a surface of gold hydrosol. The adsorption of gold nanoparticles on the mixed monolayer led to an increase of interactions between oppositely charged surfactants giving a "soap" of mixed fatty salt. The observed effect is equivalent to a virtual "cooling" of floating monolayer, which undergoes rapid condensation on a surface of aqueous colloid. The consequent shrinking and rearrangement of the monolayer resulted in aggregation of nanoparticles into colloidal 2D "soap"-gels, which represented arrested colloidal phases within nonadsorbing organic medium. When sequentially deposited onto solids by Langmuir-Blodgett technique, the 2D "soap"-gels separated into organic and colloidal phases and gave dendrite-like bilateral organic crystallites coated with gold nanoparticles. The reported colloidal "soap"-assembly can offer a new opportunity to design 2D colloidal systems of widely variable chemistry and structures.     

Site-selective patterning of organic luminescent molecules via gas phase deposition

In this paper, we present a bottom-up approach to pattern organic luminescent molecules with a feature size down to sub-100 nm over wafer-sized areas. This method is based on the selective gas deposition of organic molecules on self-organized patterned structures, which consist of an organic monolayer with two different phases rather than different materials. The site selectivity is controllable by deposition rate and the pattern features. The reason for the site selectivity may be due to the nucleation and diffusion behaviors of the deposited organic molecules on different monolayer phases.     

Self-assembly and proton conductance of organic nanotubes from pillar[5]arenes

Organic nanotubes have been assembled from pillar[5]arenes 1 and 2. Compound 1 gelates organic solvents through the formation of tubular fibers which are evidenced by TEM and XRD experiments, while 2 assembles into two different channels under the template effect of water wires. In addition, the water wires in the nanotubes of 2 can be under selective proton conductance. The results described herein represent a new strategy for building tubular structures.     

Biomimetic synthesis of calcium carbonate with different morphologies under the direction of different amino acids

Using three different amino acids (AAs) as organic matrices, including the highly nonpolar hydrophobic l-valine, the positively charged l-arginine and the less polar uncharged l-serine, calcium carbonate (CaCO₃) with different morphologies and polymorphs were synthesized by a facile gas diffusion reaction based on biomimetic strategy. Compared with the control cubic calcite obtained in the absence of AAs, the product from l-valine was cubic calcite aggregates assembled by nano-platelets. The product from l-arginine was spherical vaterite aggregates assembled by spherical nanoparticles. The product from l-serine was the mixture of cubic calcite and spherical vaterite. The structures and properties of the side chains of the AAs exerted the significant effects on the nucleation and growth of the CaCO₃. The formation mechanisms of the CaCO₃ in the presence of AAs are preliminarily discussed. The results suggest that the polymorphs and morphologies of the inorganic nanomaterials might be easily adjusted through the careful selection of the organic matrices.     

Water superstructures within organic arrays; hydrogen-bonded water sheets, chains and clusters

A strategy for encouraging the formation of extended water arrays is presented, in which molecules that contain a 1,4-dihydroquinoxaline-2,3-dione core are used as supramolecular hosts for the accommodation of guest water molecules and arrays. These molecules were selected as they contain a hydrophilic oxalamide-based "terminus" that allows water molecules to hydrogen-bond to the host organic molecules as well as to each other. The host molecules also contain a hydrophobic "end" based upon an aromatic ring, which serves to encourage the formation of discrete water clusters in preference to three-dimensional networks, as the water molecules cannot form strong hydrogen bonds with this part of the molecule. A systematic study of several hydrated structures of four organic molecules based on 1,4-dihydroquinoxaline-2,3-dione (qd) is discussed. The organic molecules, qd, 6-methyl-1,4-dihydroquinoxaline-2,3-dione (mqd), 6,7-dimethyl-1,4-dihydroquinoxaline-2,3-dione (dmqd) and 1,4-dihydrobenzo[g]quinoxaline-2,3-dione (Phqd), act as supramolecular crystal hosts for the clusters of water, with zero-, one- and two-dimensional arrays of water being observed. The hydrogen bonding in the structures, both within the water clusters and between the clusters and organic molecules, is examined. In particular, the structure of dmqd6 H2O contains a two-dimensional water sheet composed of pentagonal and octagonal units. Phqd3 H2O forms a hydrophilic extended structure encouraging the formation of one-dimensional chains consisting entirely of water. Both qd2 H2O and dmqd2 H2O can be considered to form one-dimensional chains, but only by utilising bridging carbonyl groups of the oxalamide moieties to form the extended array; if only the water is considered, zero-dimensional water tetramers are observed. The remaining hydrated structures, [Na+dmqd-]dmqdH2O, dmqd1/3H2O and mqd1/2H2O, all contain discrete water molecules but do not form extended water structures.     

Organic chlorine as a hydrogen-bridge acceptor: evidence for the existence of intramolecular O--H...Cl--C interactions in some gem-alkynols

The acceptor capabilities of "organic" halogen, CX (X=F, Cl, Br, I), with respect to hydrogen bonding are controversial, and unactivated organic chlorine is generally deemed to be a poor acceptor. Hydrogen bridges of the type O--H...Cl--C are uncommon and occur mainly in an intramolecular situation when the donor group is sterically hindered, so that the formation of intermolecular interactions is difficult. In this paper, intramolecular O--H...Cl--C interactions in a series of chloro-substituted gem-alkynols are studied. We describe various features of this interaction using crystallographic, spectroscopic and computational methods. The O--H...Cl--C interaction occurs in five of the six compounds under consideration here (CDDA, 14DDDA, 15DDDA, 18DDDA, 15MKA). Solution (1)H NMR spectroscopy shows that the interaction is intramolecular and that it is a true hydrogen bond. DFT calculations give a stabilisation energy around 4.0 kcal mol(-1). In the crystal structures of the compounds studied, the intramolecular O--H...Cl--C interactions fit into the overall scheme of cooperative interactions. These structures may be derived from that of the unsubstituted compound DDA by means of synthon exchange and the O--H...Cl--C interaction fares surprisingly well in the presence of competing stronger acceptors. The crystal structures show an unusual degree of modularity for compounds that generally form interactions that are weak and variable. It is noteworthy that the so-called "weak" acceptor, organic chlorine, is able to sustain a good intramolecular hydrogen bridge that is of an attractive and stabilizing nature and which is of potential importance in crystal engineering and supramolecular chemistry.     

Elementary building blocks of self-assembled peptide nanotubes

In the world of biology, "self-assembly" is the ability of biological entities to interact with one another to form supramolecular structures. One basic group of self-assembled structures is peptide nanotubes (PNTs). However, the self-assembly mechanism, with its special characteristics, is not yet fully understood. An exceptional quantum-confined approach is shown here for the self-assembly mechanism in bio-inspired materials. We found the elementary building block of the studied PNT, which is self-assembled from short peptides composed of two phenylalanine residues, to be 0D-quantum-confined (can be related to confinement in 3D), also called a quantum dot (QD). This elementary building block can further self-assemble to a PNT formation. It has been observed that the assembly process of dots to tubes and the disassembly process of tubes to dots are reversible. We further show that a similar dipeptide can also self-assemble to a QD-like structure, with different dimensions. The presented peptide QD structures are nanometer-sized structures, with pronounced exciton effects, which may promote the use of an entirely new kind of organic QDs.     

Self‐Assembled Organic Microtubes from Amphiphilic Molecules

Getting the sizes sorted out : In recent years, there have been increasing numbers of reports about self‐assembled nano‐ or microtubular structures because of their potential uses in a variety of technical applications, which are largely determined by the tube sizes. This Focus Review highlights microsized self‐assembled organic tubular structures formed in aqueous solutions and organic solvents.

     

Self-assembled morphologies of monotethered polyhedral oligomeric silsesquioxane nanocubes from computer simulation

Self-assembly of functionalized nanoscale building blocks is a promising strategy for "bottom-up" materials design. Recent experiments have demonstrated that the self-assembly of polyhedral oligomeric silsesquioxane (POSS) "nanocubes" functionalized with organic tethers can be utilized to synthesize novel materials with highly ordered, complex nanostructures. We have performed molecular simulations for a simplified model of monotethered POSS nanocubes to investigate systematically how the parameters that control the assembly process and the resulting equilibrium structures, including concentration, temperature, tether lengths, and solvent conditions, can be manipulated to achieve useful structures via self-assembly. We report conventional lamellar and cylindrical structures that are typically found in block copolymer and surfactant systems, including a thermotropic order-order transition, but with interesting stabilization of the lamellar phase caused by the bulkiness and cubic geometry of the POSS nanocubes.     

Efficiency of various lattices from hard ball to soft ball: theoretical study of thermodynamic properties of dendrimer liquid crystal from atomistic simulation

Self-assembled supramolecular organic liquid crystal structures at nanoscale have potential applications in molecular electronics, photonics, and porous nanomaterials. Most of these structures are formed by aggregation of soft spherical supramolecules, which have soft coronas and overlap each other in the packing process. Our main focus here is to study the possible packing mechanisms via molecular dynamics simulations at the atomistic level. We consider the relative stability of various lattices packed by the soft dendrimer balls, first synthesized and characterized by Percec et al. (J. Am. Chem. Soc. 1997, 119, 1539) with different packing methods. The dendrons, which form the soft dendrimer balls, have the character of a hard aromatic region from the point of the cone to the edge with C(12) alkane "hair". After the dendrons pack into a sphere, the core of the sphere has the hard aromatic groups, while the surface is covered with the C(12) alkane "hair". In our studies, we propose three ways to organize the hair on the balls, Smooth/Valentino balls, Sticky/Einstein balls, and Asymmetric/Punk balls, which lead to three different packing mechanisms, Slippery, Sticky, and Anisotropic, respectively. We carry out a series of molecular dynamics (MD) studies on three plausible crystal structures (A15, FCC, and BCC) as a function of density and analyze the MD based on the vibrational density of state (DoS) method to extract the enthalpy, entropy, and free energies of these systems. We find that anisotropic packed A15 is favored over FCC, BCC lattices. Our predicted X-ray intensities of the best structures are in excellent agreement with experiment. "Anisotropic ball packing" proposed here plays an intermediate role between the enthalpy-favored "disk packing" and entropy-favored "isotropic ball packing", which explains the phase transitions at different temperatures. Free energies of various lattices at different densities are essentially the same, indicating that the preferred lattice is not determined during the packing process. Both enthalpy and entropy decrease as the density increases. Free energy change with volume shows two stable phases: the condensed phase and the isolated micelle phase. The interactions between the soft dendrimer balls are found to be lattice dependent when described by a two-body potential because the soft ball self-adjusts its shape and interaction in different lattices. The shape of the free energy potential is similar to that of the "square shoulder potential". A model explaining the packing efficiency of ideal soft balls in various lattices is proposed in terms of geometrical consideration.     

CTI: A novel charge-related topological index with low degeneracy

A new type of topological index is proposed. Its definition is based on the concept of atomic charge distributions in organic molecules. Introduction of electronic in addition to purely topologic factors allows consideration of heteroatom-containing structures as well. It is demonstrated that the index has a low degree of degeneracy, thus suggesting it can be used for coding chemical structures, discrimination of redundancies in structure generation programs, and studies of quantitative structure-activity relationships for heteroatom-containing structures.     

The Effects of Temperature of Condensation on the Thermal Stability and Morphology of 1,4-Phenylenediamine-1-Propylsilica Xerogels

1,4-phenylenediamine-1-propylsilica hybrid xerogels were obtained for two composition at different temperatures of gelation, from 5 up to 70C. The morphological effects produced by the different gelation temperatures were investigated by using N₂ adsorption-desorption isotherms and scanning electron microscopy. The thermal stability of the organic groups and their distribution on the xerogel matrix, i.e. the fraction of the organic groups that were trapped in closed pores, formed during the xerogel synthesis, and the fraction of organic groups present on the surface, were obtained by using infrared thermal analysis. The higher porosity of the xerogels and the higher thermal stability of the organic groups were achieved for samples gelled at 25C.     

Size-selective phase-transfer catalysis with interfacially cross-linked reverse micelles

Cross-linking of the reverse micelles (RMs) of a triallylammonium surfactant afforded organic nanoparticles with introverted cationic groups. The cross-linked reverse micelles catalyzed size-selective biphasic reaction between sodium azide and alkyl bromides. Size selectivity of up to 9:1 was obtained for alkyl bromides with similar structures. The selectivity was influenced strongly by the size of the water pool and proposed to happen as a result of the "sieving" effect of the alkyl corona.