Tetraphosphinite resorcinarene complexes: silver(I) capsule complexes

Resorcinarene tetraphosphinite ligands, P4, react with silver(I) trifluoroacetate or silver(I) triflate, AgX, to give the corresponding [Ag4X4(P4)] complexes. The resorcinarene skeleton in these complexes adopts a boat conformation with the silver(I) phosphinite units on the horizontal, rather than the upright, arene units of the resorcinarene. The [Ag4X4(P4)] complexes react with free P4 ligand to yield the [Ag2X2(P4)] or [AgX(P4)] complexes, which are characterized in solution by NMR spectroscopy to have a conformation opposite to that of the [Ag4X4(P4)] complexes; the silver(I) phosphinite groups are on the upright arene rings of the resorcinarene "boat" instead of the horizontal arene units. There is an easy equilibrium between these complexes. When X = triflate, the [Ag4X4(P4)] complexes disproportionate and add aqua ligands during slow crystallization to give "capsule complexes", which are characterized crystallographically as [Ag10(O3SCF3)10(OH2)6(P4)2], [Ag10(O3SCF3)6(OH2)8(P4)2][O3SCF3]4, or [Ag13(O3SCF3)13(OH2)7(P4)2] depending on the resorcinarene tetraphosphinite ligand P4 used. These unusual capsule complexes are formed by the tail-to-tail self-assembly of pairs of [Ag4(P4)]4+ units linked by additional silver ions that bind to the phenyl substituents of one resorcinarene through {Ag(eta2-C6H5)}+ binding and to the bridging triflate ligands, aqua ligands, or both of the other resorcinarene unit.     

Conformational equilibria in 7-membered ring metal chelate complexes

Bis(diphosphine)metal and (diphosphine)(diene)metal (M = Rh, Ir) cationic complexes containing 7-membered chelate rings have been studied by low temperature ³¹P and ¹H NMR spectroscopy. For cyclooctadiene-1,4-bis(diphenylphosphino)butane- and -DIOP-rhodium, and cyclooctadiene-1,4-bis(diphenylphosphino)butane-iridium complexes, boat and chair conformations may be distinguished at low temperature. ¹H NMR spectra of these and analogous complexes suggest that both boat and chair conformers are significantly populated at room temperature. Bis(diphosphine) complexes of rhodium and iridium show very complex dynamic behaviour.     

Correlating Solution- and Solid-State Structures of Conformationally Flexible Resorcinarenes: Significance of a Sulfonyl Group in Intramolecular Self-Inclusion

The synthesis of tetramethoxyresorcinarene podands bearing p-toluene arms connected by -SO₃- ( 1 ) and -CH₂O- ( 2 ) linkers is presented herein. In the solid state, the resorcinarene podand 1 forms an intramolecular self-inclusion complex with the pendant p-toluene group of a podand arm, whereas the resorcinarene podand 2 does not show self-inclusion. The conformations of the flexible resorcinarene podands in solution were investigated by variable-temperature experiments using 1D and 2D NMR spectroscopic techniques as well as by computational methods, including a conformational search and subsequent DFT optimisation of representative structures. The ¹H NMR spectra of 1 and 2 at room temperature show a single set of proton signals that are in agreement with C_4v symmetry. At low temperatures, the molecules exist as a mixture of boat conformations featuring slow exchange on the NMR timescale. Energy barriers (ΔG^≠₂₉₈) of 55.5 and 52.0 kJ mol⁻¹ were calculated for the boat-to-boat exchange of 1 and 2 , respectively. The results of the ROESY experiments performed at 193 K and computational modelling suggest that in solution the resorcinarene podand 1 adopts a similar conformation to that present in its crystal structure, whereas podand 2 populates a more versatile range of conformations in solution.     

Structure and dynamics of tetrakis(thiophosphinato)resorcinarene complexes of silver(I), gold(I), and palladium(II)

The coordination chemistry of the tetrakis(thiophosphinato)resorcinarene sulfur-donor ligands [(C6H2CH{CH2CH2Ph})4{OC(O)R}4{OP(=S)Ph2}4] (L), where R = OCH2Ph, 4-C6H4CH3, C6H11, C4H3S, or OCH2CCH, is reported. Both silver(I) and gold(I) form cationic complexes of the type [LM2]2+, in which the ligand acts as a bis(chelate) in forming complexes with linear S-M-S (M = Ag or Au) stereochemistry. Gold(I) also forms the unusual complex [L(AuCl)2][LAu2]2+, which forms a supramolecular polymer through intermolecular aurophilic attractions. Palladium(II) forms the complex [LPd2Cl2(mu-Cl)2], in which the dipalladium(II) unit extends the natural bowl structure of the resorcinarene. The solid-state and solution conformations of the complexes, as determined by X-ray structure determination and NMR spectroscopy, respectively, are similar, but several complexes were found to exhibit dynamic behavior in solution, involving either conformational mobility of the resorcinarene unit or intermolecular ligand exchange.     

Exploring potential energy hypersurfaces for triple symmetric inversion in 3-azabicyclo[3.3.1]nonan-9-one and its N-methyl derivative

The potential energy hypersurfaces for the triple inversion, from chair to boat and α to β conformations, are explored theoretically in 3-azabicyclo[3.3.1]nonan-9-one and its N-methyl derivative, by using ab initio quantum-mechanical calculations. Both compounds are precursors of rigid analogs of the potential GABA_A and GABA_B receptor antagonists. In contrast to results from semiempirical calculations, the chair–chair β conformers are found to be, by far, the most stable structures for both the nonmethylated and N-methylated compounds. The inversion barriers are found to be relatively low, so that the conformers could be expected to exist in thermodynamic equilibrium at room temperature. A population analysis reveals, however, that, in the ab initio approach, the molecules seem to exist practically only in the chair–chair–β conformation. The theoretical results compare well with the available experimental data. © 1998 John Wiley & Sons, Inc. J Comput Chem 19: 1567–1574, 1998     

Conformational and vibrational analysis with the aid of normal coordinate calculations

Many organic compounds exist as equilibrium mixtures of two or more molecular conformations, and vibrational spectroscopy can be used to obtain information about the structure of those conformations. Normal coordinate calculations are often an aid to those conformational studies and to making vibrational assignments for the different conformers. However, sometimes those calculations are partially inconclusive, and a few results are briefly discussed in which both conclusive and inconclusive results were obtained from calculations. Calculations are then applied to some 1,2-dichloro- and 1,2-dibromo-alkanes. Previous calculations on 1,2-dichloropropane and 1,2-dichlorobutane are revised, and calculations are reported for 1,2-dibromopropane, 1,2-dibromopropane-d₆, and 1,2-dibromobutane. Spectra are given for the last two of these compounds. A modified valence force field was determined for each family of 1,2-dihaloalkane that should be transferable to other members of the family.     

Nuclear magnetic resonance of 1,4-benzodiazepines. II Stereochemistry of 1,3-dihydro-2H-1,4-benzodiazepin-2-ones by lanthanide shift reagents

The sterochemistry of some 1,3-dihydro-2H-1,4-benxodiazepin-2-ones, employed as psychotherapeutic agents, is deduced by proton magnetic resonance using the paramagnetic shift reagent Eu(fod)₃. the lanthanide induced shifts are computer simulated on the basis of the geometric parameters of the protons in different model structures, having intermediate conformations between a cycloheptadiene- and a cyclohepatatriene-like system. N-Desmethyldiazepam shows a conformational equilibrium between two pseudoboat forms, while the 1-alkyl substituted derivatives exist, at room temperature, in olny one boat cycloheptatriene-like conformation.     

Heterocyclic N-glycosyl derivatives. XIV. Preparation of some N-(2,3-dideoxyglycopyranosyl)benzotriazoles by hydrogenation of N-(pent- and hex-2-enopyranosyl)benzotriazoles

Catalytic hydrogenation of a series of N-(pent- and hex-2-enopyranosyl)benzotriazoles afforded the corresponding saturated N-glycosyl derivatives having the same anomeric configuration as the starting compounds. The conformations of all compounds obtained were determined by nmr spectroscopy. The hexopyranosyl nucleosides in solution adopt the Cl conformation. On the other hand, pentopyranosyl nucleosides exist as a mixture of the two chair conformers in equilibrium, with the IC or CI ( L ) form predominating.     

Circular dichroism,proton magnetic resonance and conformation of steroid 4-en-3-ones, 4, 9-dien-3-ones and 4, 9, 11-trien-3-ones

Room and low-temperature CD of the title dienones and trienones (3 to 9) clearly show that a conformational equilibrium occurs between two ring A half-chair conformers. The relative stability of the two conformers depends on substitution of ring A. These results may be extended to other series of steroids and in particular to 4-en-3-ones. CD of these enones (14 to 28) is consistent with a conformational equilibrium between the known quasi-cis-quasi-trans conformers. The controversial conformational behaviour of 2 β-substituted 19-nor-4-en-3-ones is explained by a dynamic equilibrium in solution between the two afore-mentioned conformers rather than by single twist or deformed boat conformer.     

Vibrational spectra of 2,2-dichlorobutane

IR and Raman spectra were obtained for 2,2-dichlorobutane, which was found to exist in two molecular conformations. Normal coordinate calculations were made for 2,2-dichloropropane and both conformers of 2,2-dichlorobutane.     

Conformational analysis of cycloheptane,oxacycloheptane, 1,2‐dioxacycloheptane, 1,3‐dioxacycloheptane,and 1,4‐dioxacycloheptane

The conformational analysis of cycloheptane (1), oxacycloheptane (2), 1,2‐dioxacycloheptane (3), 1,3‐dioxacycloheptane (4), and 1,4‐dioxacycloheptane (5) has been carried out using B3LYP, CCD, CCSD, and QCISD with the 6‐311+G(d,p) and cc‐pVDZ basis sets. The twist chair conformers are predicted to be lower in energy than their corresponding boat and chair conformations. All levels of theory predict (4) to be lower in energy than (3) and (5). CCSD predicts remarkably similar activation barriers for the conformational interconversion of the twist chair conformers to their corresponding boat conformers. Small barriers to pseudorotation are also predicted. © 2007 Wiley Periodicals, Inc. Int J Quantum Chem, 2008     

Surface Trapping and STM Observation of Conformational Isomers of a Bis(Terpyridine) Ligand from Metallosupramolecular Grids

Tetranuclear Co‐grid complexes incorporating bis‐tridentate ligands, namely 4,6‐bis(2,2′‐bipyrid‐6‐yl)‐2‐phenylpyrimidine, were electrosprayed onto a Au(111) substrate under an ultrahigh vacuum. Fragmentation occurs leaving the ligands in four different conformations. Most ligands are found to form H‐bonded dimers. The most abundant conformer of the ligand on the Au surface is an asymmetric form, which has not been observed before. The present results indicate that the fragmentation of coordination compounds during the deposition process, in principle, allows for surface trapping, identification, and investigation of high energy, out‐of‐equilibrium conformations of the ligand molecules at low temperatures, which otherwise would not be observable.     

Energy-Minimized Structures and Calculated and Experimental Isomer distributions in the hexaamine-cobalt(III) system [Co(L)2]3+ with the chiral facially-coordinating triamine (l = butane-1,2,4-triamine)

Butane- 1,2,4-triamine (trab) is the smallest tridentate aliphatic unsubstituted chiral triamine. With optically pure trab, there are three, with racemic trab five isomers of [Co(trab)₂]³⁺, One of the five isomers is centrosymmetrical, the others are chiral. For one of the isomers, there are four possible conformations (all combinations of chair and skew boat conformations for the chelate six ring of each ligand), for the others there exist only three independent conformers. All sixteen independent structures have been calculated by strain-energy minimization. The calculated isomer distribution, based on total strain energies corrected with statistical entropy contributions (21%:16%:16%:4%:43%, and 40%:30%:30%, for racemic and optically pure trab, respectively) are in excellent agreement with the experimental data based on HPLC and ¹³C-NMR analyses of equilibrium solutions of the hexaamine-Co(III) compounds prepared by oxygenation of aqueous solutions in presence of activated charcoal. The results are also briefly discussed in relation to possible stereoselectivity upon complexation of optically pure trab and a racemic chiral ligand to a transition-metal center.     

Method validation and determination of enantiomers and conformers in tofisopam drug substances and drug products by chiral high-performance liquid chromatography and kinetic and thermodynamic study of the interconversion of the conformers

1-(3,4-Dimethoxyphenyl)-4-methyl-5-ethyl-7,8-dimethoxy-5H-2,3-benzodiazepine (tofisopam) contains one chiral center, so two enantiomeric forms exist. The ring system of tofisopam possesses two sterically stable boat structures, leading to two distinct conformers for each enantiomer. A method was developed for the separation of these enantiomers and conformers in the drug substances and drug products. Separation was achieved with a separation factor of at least 3.9 for any adjacent peaks. Validation of the method challenged linearity, limit of detection, limit of quantification, specificity, accuracy, repeatability, intermediate precision, robustness, and stability of standard and sample solutions, and all validation results met the acceptance criteria. A study of accuracy at 80%, 100%, and 120% levels gave recoveries of 100 +/- 1%. The RSD of six sample injections for repeatability was less than 0.5%. The detection limit of tofisopam enantiomer was as low as 0.12 microg/mL. The kinetics and thermodynamics of the interconversion of tofisopam conformers were also investigated, and the kinetic and equilibrium constants of the interconversion process were determined at 15 degrees C, 25 degrees C, and 35 degrees C.     

Heterovalent Au(III)-M(I) (M=Cu, Ag, Au) complexes derived from incorporation of [Au(tdt)2]- (tdt = toluene-3,4-dithiolate) with [M2(dppm)2]2+ (dppm = Bis(diphenylphosphino)methane)

Polynuclear heterovalent Au(III)-M(I) (M = Cu, Ag, Au) cluster complexes [Au(III)Cu(I)8(mu-dppm)3(tdt)5]+ (1), [Au(III)3Ag(I)8(mu-dppm)4(tdt)8]+ (2), and [Au(III)Au(I)4(mu-dppm)4(tdt)2]3+ (3) were prepared by reaction of [Au(III)(tdt)2]- (tdt = toluene-3,4-dithiolate) with 2 equiv of [M(I)2(dppm)2]2+ (dppm = bis(diphenylphosphino)methane). Complex 3 originates from incorporation of one [Au(III)(tdt)2]- with two [Au(I)2(dppm)2]2+ components through Au(III)-S-Au(I) linkages. Formation of complexes 1 and 2, however, involves rupture of metal-ligand bonds in the metal components and recombination between the ligands and the metal atoms. The Au(tdt)2 component connects to four M(I) atoms through Au(III)-S-M(I) linkages in syn and anti conformations in complexes 1 (M = Cu) and 3 (M = Au), respectively, but in both syn and anti conformations in complex 2 (M = Ag). The tdt ligand exhibits five types of bonding modes in complexes 1-3, chelating Au(III) or M(I) atoms as well as bridging Au(III)-M(I) or M(I)-M(I) atoms in different orientations. Although complexes 1 and 2 are nonemissive, Au(III)Au(I)(4) complex 3 shows room-temperature luminescence with emission maximum at 555 nm (tau(em) = 3.1 micros) in the solid state and at 570 nm (tau(em) = 1.5 micros) in acetonitrile solution.     

The Structural Diversity of Benzofuran Resorcinarene Leads to Enhanced Fluorescence

An unexpected and previously unknown resorcinarene mono‐crown with a fused benzofuran moiety in its macrocyclic core was obtained as a byproduct from a bridging reaction of tetramethoxy resorcinarene with tetraethylene glycol ditosylate. The formation of the fused benzofuran moiety in the resorcinarene macrocycle resulted in a unique rigid and puckered boat conformation, as shown by XRD studies in the solid state. Modification of the macrocycle was also observed to affect the photophysical properties in solution by enhancing the fluorescence brightness compared with a conventional resorcinarene macrocycle. The fluorescent properties enabled unique detection of structural features, that is, the rigid boat conformation with the conjugated benzofuran system and the more flexible crown bridge part, in solution.     

Origin of regioselectivity in α-humulene functionalization

Humulene is a sesquiterpene with an important biochemical lead structure, consisting of an 11-membered ring, containing three nonconjugated C═C double bonds, two of them being triply substituted and one being doubly substituted. As observed by many groups, one of the two triply substituted C═C double bonds is significantly more reactive. In order to rationalize this peculiar regioselectivity, the conformational space of humulene has been explored computationally using various DFT functionals. Four different conformations were identified. Each conformation is chiral and has two enantiomeric forms, yielding a total of eight conformers. The potential energy surface for the interconversion of these conformers was characterized via intrinsic reaction coordinate analyses. Furthermore, an evaluation of the microcanonical partition functions allowed for a quantification of the entropy contributions and the calculation of the temperature dependent equilibrium composition. The results strongly suggest that the high regioselectivity is related to a strong, hyper-conjugative σ(Cα-Cβ)-π(C═C) orbital overlap in the predominant conformations that discriminates one triply substituted double bond from the other. Furthermore, the order of magnitude of the calculated activation energies for the interconversions of the conformers is supported by NMR measurements at different temperatures.     

Models of the low-spin iron(III) hydroperoxide intermediate of heme oxygenase: magnetic resonance evidence for thermodynamic stabilization of the d(xy) electronic state at ambient temperatures

The (13)C pulsed ENDOR and NMR study of [meso-(13)C-TPPFe(OCH(3))(OO(t)Bu)](-) performed in this work shows that although the unpaired electron in low-spin ferrihemes containing a ROO(-) ligand resides in a d(pi) orbital at 8 K, the d(xy) electron configuration is favored at physiological temperatures. The variable temperature NMR spectra indicate a dynamic situation in which a heme with a d(pi) electron configuration and planar porphyrinate ring is in equilibrium with a d(xy) electron configuration that has a ruffled porphyrin ring. Because of the similarity in the EPR spectra of the hydroperoxide complexes of heme oxygenase, cytochrome P450, and the model heme complex reported herein, it is possible that these two electron configurations and ring conformations may also exist in equilibrium in the enzymatic systems. The ruffled porphyrinate ring would aid the attack of the terminal oxygen of the hydroperoxide intermediate of heme oxygenase (HO) on the meso-carbon, and the large spin density at the meso-carbons of a d(xy) electron configuration heme suggests the possibility of a radical mechanism for HO. The dynamic equilibrium between the ruffled (d(xy)) and planar (d(pi)) conformers observed in the model complexes also suggests that a flexible heme binding cavity may be an important structural motif for heme oxygenase activity.