Development of new coarse-grained models for chromonic liquid crystals: insights from top-down approaches

ABSTRACT

Two top-down coarse-grained molecular simulation models for a chromonic liquid crystal, 3,6,7,10,11-hexa-(1,4,7-trioxa-octyl)-triphenylene, are tested. We use an extension of the well-known MARTINI model and develop a new coarse-grained model based on statistical associating fluid theory (SAFT)-γ perturbation theory. For both models, we demonstrate self-assembly in the isotropic phase of the chromonic and we test the effectiveness of both models in terms of the structures of the chromonic aggregates that are produced in solution and the thermodynamics of association. The latter is tested by calculations of the potential of mean force for dimers in solution, which measures the strength of molecular association. SAFT-γ provides valuable insights into the thermodynamics of assembly. Exploration of a range of interactions between unlike sites demonstrates that chromonic self-assembly only occurs in a small parameter space where the hydrophilic–lipophilic balance between aromatic core and ethylene oxide chains is optimal. Outside of this balance, chromonic self-assembly is replaced by the formation of conglomerates of molecules or short stacks.     

Chromonic liquid crystals: properties and applications as functional materials

Chromonic liquid crystals (or chromonics) are formed by the self-organization of aromatic compounds with ionic or hydrophilic groups in aqueous solutions. This review summarizes the research on chromonic liquid crystals in the last two decades. The research embraced the studies of commercially available chromonic dyes and drugs, the syntheses and investigations of molecularly designed mesogens, the invention of novel processes for aligning chromonic liquid crystals, and the development of new applications as functional materials and biosensors.     

Chromonic liquid crystals formed by CI Acid Red 266 and related structures

Chromonic liquid crystals are currently receiving increased attention because they have applications in a wide range of products. In this study, we have compared the chromonic mesophase behaviour of four azo dyes with similar chemical structures. Our objective is to determine if there is an obvious link between mesophase formation and dye chemical structure. Orange G does not form mesophases over the concentration range examined (saturated solution > ~20–30 wt%). The other three compounds all form nematic (N) and hexagonal (H) mesophases, but over very different concentration ranges. X-ray diffraction shows that the ordered Edicol Sunset Yellow (ESY) aggregates present in the mesophases have a single molecule cross section, while those of CI Acid Red have a cross section equivalent to six to eight molecules, probably organised in a ‘water-filled pipes’ structure. NMR quadrupole splittings of ²H₂O demonstrate that water binding to the aggregates is similar to that found for surfactant lyotropic mesophases. The sodium (²³Na) quadrupole splittings for Orange II and CI Acid Red are similar to the values found for surfactant hexagonal phases, suggesting that most sodium ions are ‘bound’ to the aggregates. This is unlike the behaviour of ESY where only one of the two sodium ions is bound.     

Catalysis of O-(para-nitrophenyl) O,O-dimethyl thiophosphate decomposition by chromonic mesophases based on polymerized ionic amphiphiles

The formation of a nematic chromonic mesophase in aqueous solutions of quaternized poly(ethylene imine) has been found using polythermal polarization microscopy. The reaction kinetics of O-(para-nitrophenyl) O,O-dimethyl thiophosphate hydrolysis has been studied by spectrophotometry, and a comparative analysis of the effects of lyotropic liquid crystals constructed as hexagonal and chromonic mesophases on this kinetics has been performed. It has been found that the hydrolysis of the substrate in a nematic chromonic mesophase is accelerated due to the concentration of the reactants.     

Azidinium-Salze. 25. Mitteilung. Symmetrische Azopyridinon-Farbsalze: Synthese,spektrophotometrische und acidobasische Eigenschaften,Metallkomplex-Bildung und kinetische Untersuchung der Azo-Kupplung

Symmetrical Azopyridinone Dyes: Synthesis, Spectrophotometrical and Acidobasic Properties, Metal-Complex Formation and Kinetical Investigation of the Azo-Dye Formation The 13 substituted symmetrical azopyridinone dyes 2a–n were synthesized and their VIS spectra measured. The pK*_a values of some dyes and of pyridinone coupling components were determined in MeOH/H₂O 64:36. The metal-complex formation of the dyes with Cd²⁺, Zn²⁺, Co²⁺, Ni²⁺, and Cu²⁺ was investigated, and complex-formation constants of the 1:1 complexes were determined in H₂O for 2k (Table 2) and in dimethylformamide/H₂O 1:1 for some other azopyridinone dyes (Table 3). The mechanism of the azo-dye formation was investigated and found to be much more complicated than expected. A mechanism of the coupling reaction was developed (see Scheme 4) and fitted by least-squares calculations.     

Bright,Color-Tunable Fluorescent Dyes in the Vis/NIR Region: Establishment of New “Tailor-Made” Multicolor Fluorophores Based on Borondipyrromethene

A new series of high-performance fluorophores named Keio Fluors (KFL), which are based on borondipyrromethene (BODIPY), are reported. The KFL dyes cover a wide spectral range from the yellow (547 nm) to the near-infrared (NIR, 738 nm) region, and their emission wavelength could be easily and subtly controlled based on simple molecular modifications only, without losing their optical properties. This “tailor-made” synthetic strategy for tuning the emission wavelength enabled the creation of fourteen KFL dyes with well-controlled emission colors (yellow, orange, red, far-red, and NIR). Moreover, these KFL dyes also retain their excellent optical properties, such as spectral bands sharper than quantum dots, high extinction coefficients (140 000–316 000 M ⁻¹ cm⁻¹), and high quantum yields (0.56–0.98), without any critical solvent polarity dependent decrease of their brightness. These advantageous characteristics make the KFL dyes potentially useful as new candidates of fluorescent standard dyes to substitute or to complement existing long-wavelength fluorescent dyes, such as cyanines, oxazines, rhodamines, or other BODIPY dyes.     

Investigation of aggregation behavior using computational methods and absorption spectra for trisazo direct dyes

Direct dyes are likely to self-associate in aqueous solutions. Here, we present the aggregation characteristics of three trisazo direct dyes investigated using a procedure, which combines computational and experimental approaches. The geometric features of the molecules and their aggregates were elucidated by molecular modeling and optimization. The relative energies specific for the aggregation process yielded the optimum number of molecules forming an aggregate: two for AHDS dye and three for SDH and AIDS dyes. The results were further confirmed by using spectrometric determination and mathematical analysis. Accordingly, molecular aggregation was studied in aqueous solutions as a function of dye concentration (10^?6–10^?3 mol/l) and solution pH (4–10). As the dye concentration increased, shifts in absorption spectra were observed, suggesting the formation of aggregates. The pH variation produced a change in the spectral maximum, confirming the aggregation. The mathematical processing of the absorption spectrum data confirmed the number of chemical species of each aggregate as resulted from computational calculations.     

The chromonic phases of dyes

Abstract

It has been shown that the lyotropic liquid-crystalline phases formed by certain dyes are structurally analogous to the chromonic N and M liquid-crystalline phases previously thought to be unique to certain anti-asthmatic/anti-allergic drugs. We suspect that these two groups of compounds will prove to be representatives of a large new class of mesogenic materials.     

New phosphonate-substituted tricarbocyanines and their interaction with bovine serum albumin

New tricarbocyanine dyes with phosphonate groups (2, 3) were synthesized and their binding constants to bovine serum albumin (BSA) were determined. The binding constants of the synthesized tricarbocyanines and cardiogreen (1) (K_b ~ 10⁵ M^–1) are similar, indicating an insignificant contribution of the Coulomb interaction to the complex formation, which is determined by the polymethine chain interaction with BSA. The fluorescence lifetimes attest to the formation of two types of complexes: the lifetime of the dye complex with BSA with a major contribution (~80%) is 740–800 ps, and a lifetime of ~210 ps corresponds to the complex of dye aggregates with BSA.     

Chromonic mesophases

Over the last 10 years, there has been a growing acceptance of the concept of chromonic phases and a wider recognition that they form a well-defined family of lyotropic liquid crystalline phases, with a package of properties distinct in almost every aspect, from those of conventional amphiphiles. New chromonogenic compounds have appeared and new technological uses for chromonic systems are being actively explored. Recent promising investigations include the synthesis of a chromonic dye, C.I. Direct Blue 67, which has an N phase of high order parameter and which can be dried down to give well-oriented films of solid. When dried down on a ‘command surface’ of photoaligned substrate this can produce a highly patterned film. The use of chromonic phases in the construction of compensating plates for improving the viewing characteristics of twisted nematic displays has been explored. Although this technology may not be suitable for commercially exploitation in its present form, the success of the devices is significant. It is suggested that current studies of the way in which the temperature range of thermotropic discotic mesophases is enhanced in 1:1 CPI mixtures may well lead to improved formulations for chromonic dyes. It is predicted that the marriage of chromonic phase technology with current biochemical analytical techniques will give rise to a new generation of medical diagnostic tests.     

The intercalation of ethidium bromide in the chromonic lyotropic phases of drugs and nucleic acids

Chromonic liquid crystalline phases are formed by a variety of drug and dye/water systems. In contrast to conventional lyotropic phases (where micelle formation underlies the mesogenic properties), in chromonic systems the molecules stack in columns. The different chromonic phases are different arrangements of these columns. We have examined the solution of ethidium bromide (EB) in the well-documented chromonic Intal/water system. EB is a widely used nucleic acid stain which changes colour when intercalated into DNA and which becomes fluorescent.

We have charted the changes in the temperature/composition phase diagram of the Intal/water system caused by adding EB. Although there are changes in the position of the phase boundaries, the overall pattern remains qualitatively the same—implying that the host phase is accepting EB as a similar chromonic molecule. The intercalation of EB molecules in the chromonic host phase results in optical effects—a metachromic colour change and fluorescence, similar to those occurring when the dye stains DNA.

These observations strengthen our belief that the central stack of bases in DNA can be regarded as being chromonic in nature.     

Recoordination of a metal ion in the cavity of a crown compound: a theoretical study

The absorption spectra of styrylbenzothiazolium dye derivatives were calculated by the time-dependent density functional (TD DFT) method. The dyes of interest were (p-dimethylamino)styrylbenzothiazolium dye and its protonated form as well as aza-15(18)-crown-5(6)-containing dyes and their complexes with alkali (K⁺ and Na⁺) and alkaline-earth (Ca²⁺, Sr²⁺, and Ba²⁺) cations. Several low-lying conformers of the azacrown-containing dyes were considered. The electronic and geometric structures of the excited states responsible for the appearance of the long-wave (π-π*) absorption bands are studied. Complexation causes a hypsochromic shift of the long-wave absorption band correlating with the pyramidality of the crown ether nitrogen in the complex. The interaction of the cation with 3–4 solvent molecules or a counterion (ClO₄ ^?) considerably reduces this shift, especially in the conformers without the metal-nitrogen bond. In some cases, the long-wave absorption band is close to the absorption band of the free dye. Similar results were obtained using the polarizable continuum model of solvation. Excited-state structures of the free model dye and the free azacrown-containing dyes exhibit a tendency to bond alternation. Conversely, the cationic complexes of the crown-containing dyes and the protonated model dye exhibit a tendency to bond equalization in the excited state. The changes in the excited-state geometries of the free dyes and their complexes account for the complexation-induced fluorescence enhancement observed in the experiments.     

2,1,3-Benzothiadiazole-containing donor–acceptor–acceptor dyes for dye-sensitized solar cells

A series of organic dyes with a donor–acceptor–acceptor (D–A–A) configuration, in which various diarylthienylamine donors and a cyanoacrylic acid acceptor are bridged by a low-band-gap 2,1,3-benzothiadiazole acceptor, have been synthesized, characterized, and employed as photosensitizers for dye-sensitized solar cells (DSSCs). The adoption of 2,1,3-benzothiadiazole as the bridging acceptor endowed these tailor-made dyes with superior light-harvesting capabilities in comparison to their previously reported pyrimidine-based analogs. After fine-tuning the fabrication conditions, DSSCs based on these dyes showed solar spectral responses extending to the near-IR region and achieved power conversion efficiencies (PCEs) of up to 3.16% (OHexDPTB) under simulated AM 1.5G irradiation (100 mW cm^?2).     

Kinetics of Fading of Some Triphenylmethane Dyes: Effects of Electric Charge,Substituent, and Aqueous Binary Mixtures of Dimethyl Sulfoxide and 2‐Propanol

The rate constants of alkaline fading of a number of triphenylmethane (TPM) dyes including methyl green (ME²⁺), brilliant green (BG⁺), fuchsin acid (FA^2?), and bromophenol blue (BPB^2?) were obtained in aqueous binary mixtures of 2‐propanol (protic solvent) and dimethyl sulfoxide (DMSO) (aprotic solvent) at different temperatures. It was observed that the reaction rate constants of BG⁺ and ME²⁺ increased and those of FA^2? and BPB^2? decreased with an increase in weight percentages of aqueous 2‐propanol and DMSO binary mixtures. 2‐Propanol and DMSO interact with the used TPM molecules through hydrogen bonding and ion–dipole interaction, respectively, in addition to their hydrophobic interaction with TPM dyes. The fundamental rate constants of a fading reaction in these solutions were obtained by the SESMORTAC model. Also, the effect of electric charge and substituent groups of a number of TPM dyes on their alkaline fading rate was studied.     

Surface interaction and self-assembly of cyclodextrins with organic dyes

The interaction of seven novel substituted merocyanine dyes, i.e. 1-methyl-4-[2-(3-methoxy-4-hydroxyphenyl)ethenyl)]pyridinium iodide, 1-methyl-4-[2-(3,5-dimethoxy-4-hydroxyphenyl)ethenyl)]pyridinium iodide, 1-methyl-4-[2-(4-dimethylaminophenyl)ethenyl)]pyridinium iodide, their quinoide forms as well as 1-methyl-4-[2-(3-methoxy-4-oxocyclohexadienilydene)ethylidene]-1,4-dihydropyridine, 1-methyl-4-[2-(3,5-dimethoxy-4-oxocyclohexadienilydene)ethylidene]-1,4-dihydropyridine, with α-CD, γ-CD as well as functionalized γ-cyclodextrin phosphate sodium salt is studied by the methods such as UV–Vis and fluorescence spectroscopy, linear-polarized infrared (IR-LD) spectroscopy of oriented colloids in nematic host, ¹H- and ¹³C-NMR spectroscopy, HPLC ESI tandem mass spectrometry, scanning electron and tunneling microscopy, powder X-ray diffraction as well as thermal methods. A formation of the 1D and 2D “supramolecular polymers” with nanosizes is found. The dyes are adsorbed on the CDs surface and form a hexagonal microcrystalline sub-structures. Remarkable fluorescence properties depending of the type of the substituent in the dyes, in solid-state are observed.     

Simple Method for Determination of Lead in Hair Dyes Using Slurry Sampling Graphite Furnace Atomic Absorption Spectrometry

A fast, simple and sensitive method for determining of lead in hair dyes using graphite furnace atomic absorption spectrometry with slurry sampling was developed. Multivariate optimization was used to establish optimal analytical parameters through a fractional factorial and a central composite design. The samples were submitted for direct analysis without prior digestion and were diluted in 2.5% v/v HNO₃ and 1.5% v/v H₂O₂. Palladium (chemical modifier) and rhodium (permanent modifier) were selected from several potential modifiers. The optimal conditions were a pyrolysis time of 10 s (liquid and dust dyes) 20 s (cream dyes), a pyrolysis temperature of 789°C (liquid dyes) or 750°C (cream and dust dyes) and an atomization temperature of 1800°C for all dyes. Under optimum conditions, the calibration graph is linear in the 1.50–50.0 µg L^?1 concentration range, with a detection limit of 0.33, 0.44, and 0.39 µg L^?1 for liquid, dust, and cream hair dyes, respectively. The relative standard deviation ranged from 1.63 to 4.56%. The recovery rate ranged from 85 to 108%, and no significant differences were found between the results obtained with the proposed method and the microwave decomposition analysis method of real samples. The concentration ranges obtained for lead in the hair dyes samples were 1.00–11.3 µg L^?1 for liquid dyes, 14.0–100 µg kg^?1 for dust dyes, and 19.9–187 µg kg^?1 for cream dyes.     

Synthesis and Characterization of Some Novel Dichromophoric Cyanine Dyes

Here, the synthesis of two novel series of dichromophoric cyanine dyes were reported. The first series of novel bis-azacyanine dyes 3a–d was afforded by reaction of 2-(1,3,3-trimethyle indoline-2-ylidene)acetaldehyde with diaminoaromatics, and the second series of novel bis-diazacyanine dyes 4a–d was obtained using quaternization of an amine group in disazo compounds, which were produced by the reaction of disazoaromatics with 2-methylene-1,3,3-trimethyle indoline. The products were identified by ¹H NMR, ¹³C NMR, infrared, UV-vis, and mass spectroscopy.     

Liquid crystal effects on bacterial viability

The primary objective of this research was to test the hypothesis that lyotropic chromonic liquid crystals (neutral grey, red 14, blue 27, cromolyn) are not toxic to bacteria as compared with surfactant-based lyotropic (CPCl and CsPFO) or thermotropic (5CB and E7) liquid crystals. Biocompatibility of most liquid crystals is currently unknown and is required for the development of systems interfacing liquid crystals and biological systems. Potential liquid crystal toxicity was evaluated by two methods. The first examined bacterial survival measured by bacterial growth over 24 hours, after exposure to various liquid crystals. The second toxicity method evaluated liquid crystal effects on bacterial membrane permeability using two fluorescent dyes. Three different types of bacteria were evaluated to assess bacterial structure differences with respect to liquid crystal toxicity. The results of this study indicate that lyotropic chromonic liquid crystals are not toxic to bacteria, whereas thermotropic and surfactant-based lyotropic liquid crystals are toxic to one or more forms of bacteria. We conclude that lyotropic chromonic liquid crystals may be the preferred material in designing liquid crystal-based systems that interact with biological systems, especially in the use of liquid crystal-based biosensors.     

Proton NMR relaxation study of molecular dynamics of chromonic liquid crystal Edicol Sunset Yellow

Proton nuclear magnetic resonance (¹H NMR) relaxometry, over about five decades in Larmor frequency, and pulsed field gradient NMR were used to study the molecular dynamics in the chromonic nematic and isotropic phases of stacked molecules of the binary mixture composed by Edicol Sunset Yellow (ESY) and deuterated water. Our results evidence that in both phases collective motions are responsible for the spin-lattice relaxation dispersion in the Larmor frequency range below 1 MHz. In the nematic phase, the collective motion are attributed to columnar undulations within the stacked molecules, while, in the isotropic phase, the results are explained by local order fluctuations due to the formation of the stacks. The high frequency dispersion was explained by individual molecular motions like rotations around and perpendicular to the stack axis, and also self-diffusion.     

BODIPY‐Bridged Push–Pull Chromophores for Nonlinear Optical Applications

A set of linear and dissymmetric BODIPY‐bridged push–pull dyes are synthesized. The electron‐donating substituents are anisole and dialkylanilino groups. The strongly electron‐accepting moiety, a 1,1,4,4‐tetracyanobuta‐1,3‐diene (TCBD) group, is obtained by insertion of an electron‐rich ethyne into tetracyanoethylene. A nonlinear push–pull system is developed with a donor at the 5‐position of the BODIPY core and the acceptor at the 2‐position. All dyes are fully characterized and their electrochemical, linear and nonlinear optical properties are discussed. The linear optical properties of dialkylamino compounds show strong solvatochromic behavior and undergo drastic changes upon protonation. The strong push–pull systems are non‐fluorescent and the TCBD‐BODIPY dyes show diverse photochemistry and electrochemistry, with several reversible reduction waves for the tetracyanobutadiene moiety. The hyperpolarizability μβ of selected compounds is evaluated using the electric‐field‐induced second‐harmonic generation technique. Two of the TCBD‐BODIPY dyes show particularly high μβ (1.907 μm) values of 2050×10^?48 and 5900×10^?48 esu. In addition, one of these dyes shows a high NLO contrast upon protonation–deprotonation of the donor residue.