丁基锡系列化合物与脱氧核糖核酸的相互作用

通过紫外（ultraviolet,UV）光谱和圆二色（circular dichroism,CD）光谱,研究了丁基锡化合物（一丁基锡、二丁基锡和三丁基锡）与脱氧核糖核酸（deoxyribonucleic acid,DNA）的作用方式以及时间和浓度的影响。结果显示丁基锡化合物与DNA的作用是双重的,既作用于DNA的碱基,对双螺旋结构有一定影响,又作用于DNA的磷酸基团,使构象发生变化。但是,丁基锡化合物与脱氧核糖核酸作用的程度和方式与丁基锡种类、时间和浓度等因素有关。一丁基锡倾向于与磷酸基团作用,三丁基锡倾向于与碱基作用,而二丁基锡与两者作用程度相近。短时间内,丁基锡化合物的作用位点通常是DNA的碱基;长时间时,则作用位点往往是DNA的磷酸基团。低浓度的丁基锡化合物倾向与DNA的碱基结合,高浓度的丁基锡化合物倾向与DNA的磷酸基团结合。     

硫杂蒽酮镍（II）配合物与DNA的作用研究

合成了O-（硫杂蒽酮-[2]-基）-氧乙酸镍（II）配合物。通过元素分析,IR, DTA-TG谱对其结构进行了表征。研究表明：配体羧羰基脱质子后与镍离子配位,配合物中含有一定量的配位水。同时以紫外可见光谱、荧光光谱、园二色谱,电化学方法和凝胶电泳方法研究了该配合物与DNA的作用。结果表明,该配合物能在生理条件下比配体和金属离子更有效地切割质粒DNA,自由基捕捉剂的加入不影响配合物的切割活性。该配合物使DNA溶液的紫外吸收强度和园二色吸收强度降低,DNA的存在可使该配合物的氧化还原活性降低。与溴化乙锭和DNA的竞争反应说明,该配合物主要以嵌入方式与DNA结合。     

电化学法研究苯磺酰类5-氟尿嘧啶衍生物与双链和G-四链DNA的相互作用

本文以自组装法制得的双链DNA（ds．DNA）和G-四链体DNA（G4-DNA）修饰的金电极为工作电极,以Fe（CN）63-／4-为电活性指示剂,采用循环伏安法和微分脉冲伏安法研究了非电活性苯磺酰类5-氟尿嘧啶衍生物与ds-DNA和G4．DNA的相互作用．实验结果表明：苯磺酰类5-氟尿嘧啶与ds-DNA或G4．DNA的结合常数与苯环上邻、对位取代基的得失电子能力密切相关,强吸电子基团取代有利于苯磺酰类5-氟尿嘧啶选择性结合G-四链体DNA．     

磺酸咔咯及其镓(Ⅲ)配合物与DNA的相互作用和光核酸酶活性

本文用紫外-可见光谱、荧光光谱、圆二色光谱和粘度法研究了2,17-二(磺酸钠基)-5,10,15-三(五氟苯基)咔咯(1)及其镓配合物(1-Ga)与小牛胸腺DNA(ct-DNA)的相互作用。结果表明1和1-Ga通过外部结合的方式与ct-DNA相互作用,且结合能力1-Ga比1大。琼脂糖凝胶电泳实验显示1和1-Ga均具较好的光核酸酶活性,1-Ga光断裂DNA效果比1好,其光断裂机理与羟基自由基的产生有关。     

磺酸咔咯及其镓(Ⅲ)配合物与DNA的相互作用和光核酸酶活性

本文用紫外-可见光谱、荧光光谱、圆二色光谱和粘度法研究了2,17-二(磺酸钠基)-5,10,15-三(五氟苯基)咔咯(1)及其镓配合物(1-Ga)与小牛胸腺DNA(ct-DNA)的相互作用。结果表明1和1-Ga通过外部结合的方式与ct-DNA相互作用, 且结合能力1-Ga比1大。琼脂糖凝胶电泳实验显示1和1-Ga均具较好的光核酸酶活性, 1-Ga光断裂DNA效果比1好, 其光断裂机理与羟基自由基的产生有关。     

meso-四（4-（N-甲基吡啶基））卟啉TMPyP4与端粒DNA重复序列TTAGGG形成的G4结构的相互作用

通过圆二色谱、稳态吸收光谱、稳态荧光光谱和皮秒时间分辩荧光光谱研究了meso-四（4-（N-甲基吡啶基））卟啉（TMPyP4）与端粒DNA重复序列5＇-TTAGGG-3’形成的平行结构DNAG4的相互作用．稳态实验结果表明,二者之间的结合常数为1．29×10^6（mol／L）^-1,饱和结合数为3．将时间分辨荧光光谱应用到二者相互作用的研究中,推测了TMPyP4以插入和末端堆积两种方式与DNAG4相结合．当达到饱和结合时,一个TMPyP4分子插入到DNAG4结构层层之间,另外两个分子以末端堆积的方式结合到G4结构的两端．     

一种新型发光探针与DNA相互作用的研究

本文以稳态荧光光谱、紫外-可见吸收光谱、荧光偏振、热变性、阴离子猝灭等手段,研究了一种具有强电荷转移能力的化合物2,7-二[(N-乙基咔唑-3-基)丙烯-1-酮基]芴与DNA的相互作用。研究结果表明,2,7-二[(N-乙基咔唑-3-基)丙烯-1-酮基)芴与DNA的作用方式是混合模式,以嵌插作用为主,同时存在沟槽相互作用,其咔唑基团可能插入到DNA的碱基对之间,结合常数K为8 123.48mol/L,结合位点n为0.71。该发光探针灵敏度高,结合稳定。     

2,9-双甲基苯并噻唑乙烯基邻菲罗琳与DNA 的相互作用及应用研究

设计合成了基于2,9-双苯并噻唑乙烯基取代的邻菲罗琳荧光分子—PMBT。通过吸收光谱、荧光光谱、圆二色光谱探讨了PMBT与不同DNA的相互作用。发现PMBT与DNA存在两种不同的相互作用模式。 由于PMBT分子中带有两个正电荷,当PMBT与DNA的浓度比值较高（大于4）时,PMBT以DNA为模板按一定方向在DNA上聚集;当PMBT与DNA的浓度比小于2时,PMBT通过嵌插或末端堆积的方式分别与单/双链DNA和G-四链体DNA结合。PMBT与DNA结合导致其荧光淬灭,利用该特性将PMBT与DNA结合构建荧光增强型检测平台,可用于DNA酶活性以及DNA降解的动力学研究。     

双吖啶衍生物与核酸作用的光谱分析

用荧光光谱、紫外可见吸收光谱等方法研究合成的核酸探针与核酸的作用方式,发现DNA对这些物质的荧光具有较强的猝灭效应,其中又以10,10’二乙基-3,3’-二磺酸基-双吖啶（DESAC）、10,10’-二烯丙基-3,3’-二磺酸基-9,9＇-双吖啶（DASAC）、10,10’-二烯丙基-3,3’-二氨基-9,9＇-双吖啶（DAAAC）和10,10’-二乙基-3,3＇-二氨基-双吖啶（DEAAC）这4种物质效果最好,因此有望从这类物质中筛选出良好的核酸探针。     

司帕沙星及均三嗪衍生物铜(II)配合物与DNA作用及其抗肿瘤活性

DNA是抗肿瘤药物的重要靶点,研究药物分子与DNA之间的作用有助于设计靶向DNA类抗肿瘤药物.合成和表征了新的三元铜（II）配合物[Cu（Sf）（PyTA）（H₂O）]·ClO₄·3.5H₂O[Sf=司帕沙星,5-氨基-1-环丙基-7-（顺-3,5-二甲基-1-哌嗪基）-6,8-二氟-1,4-二氢-4-氧-3-喹啉羧酸、PyTA=2,4-二氨基-6-（2'-吡啶基）-1,3,5-均三嗪].利用电子吸收光谱、KI荧光猝灭光谱、粘度测定以及分子对接技术研究了配合物与DNA之间作用,发现配合物以插入模式与DNA结合,结合常数K_b=1.23×10⁴ L/mol.此外,应用MTT[3-（4,5-二甲基噻唑-2）-2,5-二苯基四氮唑溴盐]比色法检测了配合物的细胞毒性作用,发现配合物对癌细胞A549、Bel-7402和Eca-109等表现出良好的抑制作用[IC₅₀=（57.0±1.6）~（77.6±1.4）μmol/L].尤为重要的是,通过单细胞凝胶电泳、Hoechst 33342染色、Annexin V-FITC/PI双染流式细胞术、测定线粒体膜电位、检测细胞色素C和胞内Ca²⁺水平及细胞周期分析探究了配合物抗肿瘤作用机制,结果表明,配合物通过DNA结合及线粒体功能障碍途径诱导细胞凋亡,使细胞S和G2/M周期发生阻滞并造成DNA损伤.     

Novel cyclen-based linear polymer as a high-affinity binding material for DNA condensation

A novel cyclen-based linear polyamine (POGEC) was designed and synthesized from the reaction between 1,3-propanediol diglycidyl ether and 1,7-bis(diethoxyphosphory)-1,4,7,10-tetraazacyclod- odecane. High-affinity binding between POGEC and DNA was demonstrated by agarose gel electrophoresis and scanning electron microscopy (SEM). Moreover, the formed POGEC/DNA complex (termed polyplex) could be disassociated to release the free DNA through addition of the physiological concentration of NaCl solution. Fluorescence spectrum was used to measure the high-affinity binding and DNA condensation capability of POGEC. Circular dichroism (CD) spectrum indicates that the DNA conformation did not change after binding to POEGC. Supported by the National Natural Science Foundation of China (Grant Nos. 20725206 and 20732004), Specialized Research Fund for the Doctoral Program of Higher Education, and Scientific Fund of Sichuan Province for Outstanding Young Scientist     

荧光探针Ru(phen)2(dppx)2+测定H1N1禽流感病毒DNA

利用荧光探针Ru(phen)2dppx2+与ssDNA作用时不产生荧光或荧光很弱,而与dsDNA作用时荧光增强的机理,将H1N1禽流感病毒ssDNA与其完全互补ssDNA杂交形成dsDNA实现Ru(phen)2dppx2+对H1N1禽流感病毒DNA特定序列（5’-CTA CCA TGC GAA CAA TTC AAC CGA CAC TGT T-3’）的定量检测。在优化的实验条件下,测定H1N1禽流感病毒 DNA的线性范围为9.3×10-10～7.4×10-8 mol/L,线性关系：y = 3.3829x + 8.3948,R2 =0.9982,检出限为5.3×10-10 mol/L。该方法具有操作简单,检测快速,灵敏度高和选择好等优点。     

分子光谱法研究新型抗肿瘤前药双(β-二酮)Ti(Ⅳ)与DNA相互作用

在生理酸度(pH=7.4)下,采用紫外及荧光等分子光谱法研究了自制的双(β-二酮)Ti(Ⅳ)新型抗肿瘤前药与DNA之间的相互作用,考察了前药和溴化乙锭与鱼精DNA结合的竞争性.研究结果表明:DNA通过静态猝灭作用机制猝灭前药的荧光,并测得其在298K和308K时的猝灭常数(Kq)分别为8.590 3×1011和7.192 2×1011 L·mol-1·s-1,结合常数(Kd)分别为5.583 9×104和4.798 1×104 L·mol-1,结合位点数(n)为1.16和0.97;DNA的存在使前药的紫外吸收光谱发生减色效应且吸收波长产生红移;前药分子可插入DNA中置换出于DNA结合的溴化乙锭.这些结果说明前药分子以嵌插方式与DNA进行结合.     

Electrochemical measurement of phenothiazine-interacted DNA

The amount of DNA was measured by using thioridazine, which would be attached to the DNA, as an electrochemical indicator. An indicator (thioridazine) solution, a test solution (DNA solution), and a poly-l-lysine solution were successively placed on a glassy carbon electrode, and the electrode was allowed to dry; DNA was immobilized on an electrode surface by the electrostatic binding between DNA and poly-l-lysine. The electrode was immersed into a buffer solution for 15 min, and then differential pulse voltammetry (DPV) was carried out: the oxidation current peak of thioridazine was observed, and its magnitude depended on the amount of DNA in the solution which was used for preparing the electrode. It could be estimated between 0.2 microg DNA (corresponds to 630 pmol nucleotides) to 20 microg DNA (63 nmol nucleotides) from the oxidation peak current of DPV.     

Recognition of single-base mismatch DNA by Au nanoparticle-assisted electroelution

A simple, convenient and effective method based on the surface plasmon resonance (SPR) technique was introduced for recognition of single-base mismatch DNA (smDNA) by Au nanoparticle (AuNPs)-assisted electroelution. In this method, target DNA, including perfectly matched DNA and smDNA, hybridized with the DNA probes immobilized on Au film and AuNPs, then the Au film was negatively charged. Owing to the difference in stability between single-base mismatch and perfect match DNA, effective distinction between complementary DNA (cDNA) and smDNA was achieved in the presence of an electric field: double-stranded DNA (dsDNA) formed between smDNA targets and DNA probes was denatured by the repulsion force acting on the negatively-charged DNA-linked AuNPs, while the perfectly matched duplex was not influenced. However, if the AuNPs were absent, the effects of cDNA and smDNA were not distinguishable. The effects of electric field intensity and mismatch sites were also investigated. All of the operations were performed under mild conditions. The results showed that AuNP-assisted electroelution may be exploited for the construction of biosensors with high selectivity.     

Spectroscopic studies on the interaction of alpha‐eleostearic acid with calf thymus DNA

Interaction between alpha‐eleostearic acid (α‐ESA) and calf thymus DNA in Tris‐HCl buffer (pH = 7.4) using neutral red (NR) dye as a spectral probe was investigated using UV–Vis absorption and fluorescence spectroscopy. Spectral data matrix of the complexed reaction between α‐ESA and NR with DNA was processed with an alternative least‐squares (ALS) algorithm, the obtained concentration profiles and the corresponding pure spectra for species (NR, DNA–NR, and DNA–NR–ESA) demonstrated three kinds of reactions might occur in the system. The major groove binding between α‐ESA and DNA was further validated using circular dichroism, viscosity, DNA melting, and ionic strength effect measurements. Moreover, the calculated values of thermodynamic parameters, such as enthalpy (ΔH^θ, ?22.04 kJ/mol) and entropy change (ΔS^θ, 91.52 J K^?1 mol^?1), suggested binding between α‐ESA and DNA was mainly driven by hydrophobic interactions and hydrogen bonds without electrostatic force.     

CdTe纳米荧光探针的合成及其与DNA的相互作用

以巯基丙酸(RSH)为稳定剂,采用水相法合成了功能性CdTe纳米晶,并通过X射线衍射(XRD)和透射电镜(TEM)对其粒度和形貌进行表征。建立了一种以水溶性CdTe量子点作为荧光探针测定DNA的方法,当DNA浓度为0.2~40μmol.dm-3时,荧光强度与DNA浓度呈良好的线性关系,检测限为80nmol.dm-3,11次重复测定含有5.6μmol.dm-3的小牛胸ctDNA得到的相对标准偏差为3.4%。考察了CdTe量子点浓度、pH值、温度及作用时间等因素对DNA荧光强度的影响。研究发现CdTe纳米粒子与DNA之间存在强烈的相互作用,量子点的荧光猝灭与DNA浓度呈线性关系;作用机理研究表明,CdTe纳米粒子与DNA之间存在静电相互作用,且DNA对CdTe纳米粒子的猝灭为动态猝灭过程。     

pH对十二烷基二甲基氧化胺与DNA相互作用的影响

pH对十二烷基二甲基氧化胺与DNA相互作用的影响;DNA;十二烷基二甲基氧化胺;相互作用     

三聚氰胺对DNA潜在损伤作用的研究

在生理酸度条件下(pH 7.4),采用溴化乙锭(EB)为荧光探针的荧光光谱法、I-离子荧光猝灭效应、DNA熔点和粘度效应等手段,研究了三聚氰胺与DNA的相互作用。随着DNA的加入,三聚氰胺的荧光强度明显减小而且三聚氰胺能够猝灭DNA-EB复合物的荧光,说明三聚氰胺能够竞争置换EB而与DNA作用;三聚氰胺的加入使得DNA的粘度增大,DNA-EB的熔点降低;DNA的加入减小了I-对三聚氰胺荧光的猝灭程度。三聚氰胺以嵌插方式作用于DNA的亲核位点,意味着三聚氰胺进入生物体后有可能通过形成DNA加合物的形式造成DNA损伤,从而最终导致基因突变。     

Aggregation behavior and thermodynamics of binding between poly(ethylene oxide)-block-poly(2-(diethylamino)ethyl methacrylate) and plasmid DNA

The aggregation behavior and the thermodynamics of binding between poly(ethylene oxide)-block-poly(2-(diethylamino)ethyl methacrylate) (PEO-b-PDEAEMA) block copolymers and plasmid DNA were examined. Binding between the polymer and DNA were confirmed by gel electrophoresis. The high affinity between the polymer and DNA was demonstrated through the ethidium bromide (EtBr) displacement assay, and the binding was found to be related to the stoichiometric balance between the amine group of the polymer and the DNA nucleotide molar ratio (N/P molar ratio). The light scattering and TEM results showed that, at low polymer concentration, the hydrodynamic radii (R(h)) of the polymer/DNA complexes was around 90 nm; however, at sufficiently high polymer concentration, the complexes condensed to around 35 nm induced by a structural rearrangement of the amphiphilic nature of the block copolymer. The isothermal titration calorimetric results showed that the binding between the polymer and DNA is driven by a large favorable enthalpy.