DFT Study of Thiophene Adsorption on the Pd（111） and Pt（111） Surfaces

Thiophene adsorption on the(111) surfaces of Pd and Pt have been investigated by density functional theory.The results indicate that the adsorption at the hollow sites is the most stable.To our interest,the molecular plane of thiophene ring is distorted with C=C bond being elongated to 1.450  and C-C bond being shortened to 1.347 ,and the C-H bonds tilt 13.91～44.05o away from this plane.Furthermore,analysis on population and density of states verified the calculated adsorption geometries.Finally,charge analysis suggests that thiophene molecule is an electron acceptor,reflecting the interaction between the lone pair of sulfur and the d-orbitals of metal.     

Density Functional Theory Studies on the Adsorption of CO2 on Different CaO Surfaces

Carbon dioxide adsorbed on different kinds of CaO surfaces has been investigated with the help of the first principle density functional theory plane wave calculations. Various possible configurations have been considered and the calculated results showed that CO2 was strongly adsorbed by C atom bonded with the CaO （001） and （110） surfaces with adsorption energies of 1.38 and 3.22 eV, respectively. The adsorption of CO2 molecule on defect surfaces is complicated compared with that on the pristine surfaces. The adsorption energy of CO2 absorbed on the CaO（110） surface is larger than that of CaO（001） surface when the type of defect surface is the same.     

Oxidation Effects on the Electronic Properties of Hydrogenated Silicon Clusters

The geometric and electronic properties of some hydrogenated silicon clusters in the presence of oxygen on the surface have been investigated.The density functional theory with generalized gradient approximation functional was applied in our calculations.By calculating the total energy,the double bond Si=O is shown to be more stable than the bridge bond Si-O-Si for large size oxidized clusters.The results of Mulliken population analysis indicate that a so-called passivation effect is enhanced by oxidization effects.From the energy band structures and density of states,we find that some localized states are induced by the p-orbital of O atom mainly and reduce the energy gaps substantially.     

Theoretical Study on the Adsorption and Decomposition of Methanol over the Pt-Mo（111）/C Surface

The density functional theory(DFT) and self-consistent periodic calculation were used to investigate the methanol adsorption on the Pt-Mo(111)/C surface.The adsorption energies,equilibrium geometries and vibration frequencies of CH3OH on nine types of sites on the Pt-Mo(111)/C surface were predicted and the favorite adsorption site for methanol is the top-Pt site.Both sites of valence and conduction bands of doped system have been broadened,which are favorable for electrons to transfer to the cavity.The possible decomposition pathway was investigated with transition state searching and the calculation results indicate that the O-H bond is first broken,and then the methanol decomposes into methoxy.The activation barrier of O-H bond breaking with Pt-Mo catalyst is only 104.8 kJ mol-1,showing that carbon supported Pt-Mo alloys have promoted the decomposition of methanol.Comparing with the adsorption energies of CH3OH on the Pt(111)/C surface and that of CO,the adsorption energies of CO are higher,and Pt(111)/C is liable to be oxidized and loses the activity,which suggests that the catalyst Pt-Mo(111)/C is in favor of decomposing methanol and has better anti-poisoning ability than Pt(111)/C.     

Theoretical Study of the Iodine-catalyzed Nucleophilic Addition by Halogen Bond

The iodine-catalyzed nucleophilic addition of pyrrole to acetone has been studied by density functional theory at the level of Lanl2DZ. It has been shown that the first iodine molecule appears to have a remarkable catalytic effect on this reaction by halogen bond between carbonyl oxygen and iodine molecule,but the second one does not improve the reaction largely. In general,the nucleophilic addition at the C(2) site of pyrrole is more favorable than that at the C(3) site; however,this trend is not prominent or even changed in acetronitrile solvent for the indole system,which is consistent with the experimental result by Bandgar.     

Density Functional Theory Study of HCN Adsorption on Small Gold Clusters

A theoretical study was carried out on the adsorption of hydrocyanic acid on small Aun （n ≤ 7） clusters using density functional methods. For HCN adsorption on gold clusters, no dependence was found with respect to the even-odd alternation in relation to the number of gold atoms in the cluster. The HCN molecule is adsorbed at simple adsorption sites （1-fold coordination）, perpendicular to the adsorption site. The largest adsorption energy is only about 74.61 kJ·mol^-1, which indicates that the HCN molecule does not decompose and the C-N bond retains triple bond, and that the C-H and C-N stretching frequencies are only weakly perturbed. The adsorbed C-N and C-H stretching frequencies are blue- and red-shifted compared with the values of free HCN, respectively.     

COS Activation by Zr~＋ in the Gas Phase：A Case of Two-state Reactivity Process

To elucidate the mechanisms of Zr + reacting with COS,both the quartet and doublet potential energy surfaces (PESs) for reactions of Zr + (4 F,2 D) with COS in the gas phase have been investigated in detail by means of density functional method (B3LYP).To obtain more accurate results,the coupled cluster single-point calculations (CCSD(T)) using B3LYP optimized geometries were performed.For the C-O bond activation,the calculated results indicate that both the quartet and doublet states proceed via an insertion-elimination mechanism.For the C-S bond activation,the quartet reaction has an insertion-elimination mechanism,but the doublet reaction is a direct abstraction of the sulfur atom by Zr +.The C-S bond activation is found to be energetically more favorable than the C-O bond activation.It is found that the reaction of the 4 F gound state of Zr + to yield ZrO + is spin-forbidden (Zr + (4 F) + COS (1 Σ) → ZrO + (2) + CS (1 Σ)) and the crossing points were approximately determined.All the results have been compared with the existing experimental and theoretical data.     

Density Functional Study of the C Atom Adsorption on the α-Fe2O3 （001） Surface

The adsorption of C atoms on the α-Fe2O3(001) surface was studied based on density function theory(DFT) ,in which the exchange-correlation potential was chosen as the PBE(Perdew,Burke and Ernzerhof) generalized gradient approximation(GGA) with a plane wave basis set. Upon the optimization on different adsorption sites with coverage of 1/20 and 1/5 ML,it was found that the adsorption of C atoms on the α-Fe2O3(001) surface was chemical adsorption. The coverage can affect the adsorption behavior greatly. Under low coverage,the most stable adsorption geometry lied on the bridged site with the adsorption energy of about 3.22 eV;however,under high coverage,it located at the top site with the energy change of 8.79 eV. Strong chemical reaction has occurred between the C and O atoms at this site. The density of states and population analysis showed that the s,p orbitals of C and p orbital of O give the most contribution to the adsorption bonding. During the adsorption process,O atom shares the electrons with C,and C can only affect the outermost and subsurface layers of α-Fe2O3;the third layer can not be affected obviously.     

Adsorption and dissociation of H2O on Cu2O(100):A computational study

The adsorption and dissociation of water on Cu2O(100) have been investigated by the density functional theory-generalized gradient approximation (DFT-GGA) method. The corresponding reaction energies, the structures of the transition states and the activation energies were determined. Calculations with and without dipole correction were both studied to get an understanding of the effect of the dipole moment on the adsorption and reaction of water on dipole surface Cu2O(100). When dipole correction was added, the adsorption energies of H2O on different sites generally decreased. The calculated activation barriers for HxO (x = 1, 2) dehydrogenation are 0.42 eV (1.01 eV without the dipole correction) and 1.86 eV, respectively, including the zero point energy correction. The first dehydrogenation outcome is energetically the most stable product.     

Decomposition of methylamine on Mo(100) surface: A DFT study

The initial decomposition of methylamine on Mo(100) surface has been investigated by self-consistent (GGA-PW91) density functional theory combined with periodic slab model. The adsorption energies of possible species and the activation energies for possible elementary reactions involved are obtained in the present work. Our results indicate that the barriers decreased with the order of C-N>N-H>C-H. In addition, metastable adsorption of the abstracted hydrogen atom on the hollow site in the final state is also considered for the N-H and C-H bond breaking. For the C-H bond cleavage, the reaction barrier that the abstracted hydrogen located on the hollow site in the final state is lower than that on the bridge site. However, for the N H bond breaking, the barriers are alike for the abstracted hydrogen on both hollow and bridge sites in the final state.     

Oxygen gas-induced lip-lip interactions on a double-walled carbon nanotube edge

We have investigated adsorption of an O(2) molecule on a double-walled carbon nanotube (DWCNT) edge using density functional theory calculations. An O(2) molecule adsorbs exothermally without an adsorption barrier at open nanotube edges that are energetically favorable with a large adsorption energy of about -9 eV in most cases. Dissociative adsorption of an O(2) molecule induces various spontaneous lip-lip interactions via the bridged carbon atoms, generating the closed tube ends. This explains why the DWCNTs are chemically more stable than the single-walled nanotubes during observed field emission experiments. The field emission takes place via the localized states of the bridged carbon atoms, not via those of the adsorbed oxygen atoms particularly in the armchair nanotubes. We also find that some O(2) precursor states exist as a bridge between tube edges.     

甲硫醇在Cu(111)表面的解离吸附: 密度泛函理论研究

采用基于密度泛函理论的第一性原理方法和平板模型研究了CH₃SH分子在Cu(111)表面的吸附反应.系统地计算了S原子在不同位置以不同方式吸附的一系列构型, 第一次得到未解离的CH₃SH分子在Cu(111)表面顶位上的稳定吸附构型,该构型吸附属于弱的化学吸附, 吸附能为0.39 eV. 计算同时发现在热力学上解离结构比未解离结构更加稳定. 解离的CH₃S吸附在桥位和中空位之间, 吸附能为0.75-0.77 eV. 计算分析了未解离吸附到解离吸附的两条反应路径, 最小能量路径的能垒为0.57 eV. 计算结果还表明S―H键断裂后的H原子并不是以H₂分子的形式从表面解吸附而是以与表面成键的形式存在. 通过比较S原子在独立的CH₃SH分子和吸附状态下的局域态密度, 发现S―H键断裂后S原子和表面的键合强于未断裂时S原子和表面的键合.     

CO在Pt低指数面上吸附行为的理论研究

用密度泛函理论(DFT)中的广义梯度近似(GGA)方法对CO-Pt低指数面吸附体系进行了结构优化, 并对吸附体系的吸附热、C—O键和C—Pt键的键长、布居数分析、电子态密度进行了研究. 计算结果表明, 在0.25 ML(monolayer)的覆盖率下, CO最容易在Pt(100)晶面的桥位、Pt(110)晶面的短桥位、Pt(111)晶面的hcp三重位吸附, 吸附热分别达到了2.11、2.37、1.96 eV; CO在吸附成键过程中伴有电子在CO分子和Pt之间的转移. 吸附后, C—O键被削弱, 键长变长, 金属内部的作用亦被削弱, 其表层Pt 原子的布居数明显降低; 态密度分析表明, CO在吸附过程中, 其4σ、1π、5σ、2π轨道均参与成键.     

Adsorption of thiols on the Pd(111) surface: a first principles study

Using density functional theory formalism, we have investigated the adsorption behavior of thiols on the Pd(111) surface. Two different thiol molecules, viz. (a) methane thiol and (b) thiophene 2-thiol (TSH), were used as model adsorbates for this purpose. The results revealed that whereas the methane thiol molecule undergoes spontaneous dissociative chemisorption onto the palladium surface, the adsorption of the thiophene 2-thiol molecule does not involve cleavage of the S-H bond, leading to weak interaction energy or physisorption. The variation in the adsorption behavior has been explained based on the difference in the electronic environment of the terminal sulfur atom. The nature of binding at the interface has been analyzed through calculation of the partial density of states of the sulfur atom at the interface.     

Ni(110)-p2mg(2×1)-CO表面的几何结构和电子态

利用密度泛函理论(DFT)总能计算研究了Ni(110)-p2mg(2×1)-CO表面的原子结构和电子态. 计算结果表明: CO分子吸附于该表面的短桥位附近, 分子吸附能为1.753 eV, CO分子的键长dC—O为0.117 nm, 分子与表面竖直方向的夹角为20.0°, 碳原子和短桥位中点的连线与竖直方向的夹角为20.9°; 吸附的CO分子内原子间的伸缩振动频率为1876和1803 cm-1. 态密度研究结果表明吸附作用主要来自CO分子π、σ轨道与衬底d轨道间的杂化作用. CO分子σ轨道和衬底表面镍原子dxz轨道杂化形成的表面电子态主要位于费米能以下-10.4 至-8.8 eV和-7.4至-5.1 eV 范围内. σ和dxz轨道间的杂化作用可能是形成p2mg表面对称性的重要因素之一.     

Adsorption and protonation of CO2 on partially hydroxylated gamma-Al2O3 surfaces: a density functional theory study

Adsorption and protonation of CO2 on the (110) and (100) surfaces of gamma-Al2O3 have been studied using density functional theory slab calculations. On the dry (110) and (100) surfaces, the O-Al bridge sites were found to be energetically favorable for CO2 adsorption. The adsorbed CO2 was bound in a bidentate configuration across the O-Al bridge sites, forming a carbonate species. The strongest binding with an adsorption energy of 0.80 eV occurs at the O3c-Al5c bridge site of the (100) surface. Dissociation of water across the O-Al bridge sites resulted in partially hydroxylated surfaces, and the dissociation is energetically favorable on both surfaces. Water dissociation on the (110) surface has a barrier of 0.42 eV, but the same process on the (100) surface has no barrier with respect to the isolated water molecule. On the partially hydroxylated gamma-Al2O3 surfaces, a bicarbonate species was formed by protonating the carbonate species with the protons from neighboring hydroxyl groups. The energy difference between the bicarbonate species and the coadsorbed bidentate carbonate species and hydroxyls is only 0.04 eV on the (110) surface, but the difference reaches 0.97 eV on the (100) surface. The activation barrier for forming the bicarbonate species on the (100) surface, 0.42 eV, is also lower than that on the (110) surface (0.53 eV).     

Pyrolysis mechanisms of thiophene and methylthiophene in asphaltenes

The pyrolysis mechanisms of thiophene in asphaltenes have been investigated theoretically using density functional and ab initio quantum chemical techniques. All of the possible reaction pathways were explored using B3LYP, MP2, and CBS-QB3 models. A comparison of the calculated heats of reaction with the available experimental values indicates that the CBS-QB3 level of theory is quantitatively reliable for calculating the energetic reaction paths of the title reactions. The pyrolysis process is initiated via four different types of hydrogen migrations. According to the reaction barrier heights, the dominant 1,2-H shift mechanism involves two competitive product channels, namely, C(2)H(2) + CH(2)CS and CS + CH(3)CCH. The minor channels include the formation of CS + CH(2)CCH(2), H(2)S + C(4)H(2), HCS + CH(2)CCH, CS + CH(2)CHCH, H + C(4)H(3)S, and HS + C(4)H(3). The methyl substitution effect was investigated with the pyrolysis of 2-methylthiophene and 3-methylthiophene. The energetics of such systems were very similar to that for unsubstituted thiophene, suggesting that thiophene alkylation may not play a significant role in the pyrolysis of asphaltene compounds.     

Gas-phase interaction of thiophene with the Ti(8)C(12)(+) and Ti(8)C(12) met-car clusters

The reactivity of the Ti(8)C(12)(+) met-car cation toward thiophene was investigated using density functional theory (DFT) and mass selective ion chemistry. It is shown that the experimentally observed mass spectrum can be well described by the DFT calculations. In contrast to the weak bonding interactions seen for thiophene on a TiC(001) surface, the Ti(8)C(12)(+) met-car cation is able to interact strongly with up to four thiophene molecules with the cluster staying intact. In the most stable conformation, the thiophene molecules bond to the four low-coordinated Ti(0) sites of Ti(8)C(12)(+) via a eta(5)-C,S coordination. The stability and the activity of the Ti(8)C(12)(+) met-car is observed to increase with an increasing number of attached thiophene molecules at the Ti(0) sites, which is associated with a significant transfer of electron density from thiophene to the cluster. The additional electron density on the Ti(8)C(12)(+) cation cluster, however, is not sufficient to cleave the C-S bonds of thiophene and the dissociation reaction of thiophene is predicted to be a highly activated process. By contrast, DFT calculations for the neutral Ti(8)C(12) met-car predict that the dissociation reaction leading to adsorbed S and C(4)H(4) fragments is energetically favorable for the first thiophene molecule. The binding behavior for subsequent addition of thiophene molecules to the neutral met-car is also presented and compared to that of the cation.     

Thiophene adsorption and activation on MoP(001), gamma-Mo2N(100), and Ni2P(001): density functional theory studies

The adsorption and dissociation of thiophene on the MoP(001), gamma-Mo(2)N(100), and Ni(2)P(001) surfaces have been computed by using the density functional theory method. It is found that thiophene adsorbs dissociatively on MoP(001), while nondissociatively on gamma-Mo(2)N(100) and Ni(2)P(001). On MoP(001), the dissociation of the C-S bonds is favored both thermodynamically and kinetically, while the break of the first C-S bond on gamma-Mo(2)N(100) has an energy barrier of 1.58 eV and is endothermic by 0.73 eV. On Ni(2)P(001) there are Ni(3)P(2)- and Ni(3)P-terminated surfaces. On the Ni(3)P(2)-terminated surface, the dissociation of the C-S bonds of adsorbed thiophene is endothermic, while it is exothermic on the Ni(3)P-terminated surface.