Water monomer interaction with gold nanoclusters from van der Waals density functional theory

We investigate the interaction between water molecules and gold nanoclusters Au(n) through a systematic density functional theory study within both the generalized gradient approximation and the nonlocal van der Waals (vdW) density functional theory. Both planar (n = 6-12) and three-dimensional (3D) clusters (n = 17-20) are studied. We find that applying vdW density functional theory leads to an increase in the Au-Au bond length and a decrease in the cohesive energy for all clusters studied. We classify water adsorption on nanoclusters according to the corner, edge, and surface adsorption geometries. In both corner and edge adsorptions, water molecule approaches the cluster through the O atom. For planar clusters, surface adsorption occurs in a O-up/H-down geometry with water plane oriented nearly perpendicular to the cluster. For 3D clusters, water instead favors a near-flat surface adsorption geometry with the water O atom sitting nearly atop a surface Au atom, in agreement with previous study on bulk surfaces. Including vdW interaction increases the adsorption energy for the weak surface adsorption but reduces the adsorption energy for the strong corner adsorption due to increased water-cluster bond length. By analyzing the adsorption induced charge rearrangement through Bader's charge partitioning and electron density difference and the orbital interaction through the projected density of states, we conclude that the bonding between water and gold nanocluster is determined by an interplay between electrostatic interaction and covalent interaction involving both the water lone-pair and in-plane orbitals and the gold 5d and 6s orbitals. Including vdW interaction does not change qualitatively the physical picture but does change quantitatively the adsorption structure due to the fluxionality of gold nanoclusters.     

Phenol O–H bond dissociation energy in water clusters

We are reporting ab initio and density functional theory (DFT) calculations for the phenol O–H bond dissociation energy in the gas phase and in phenol–water clusters. We have tested a series of recently proposed functionals and verified that DFT systematically underestimates the O–H bond dissociation energy of phenol. However, O–H bond dissociation energies in water clusters are in reasonable agreement with experimental data for phenol in solution. We have evaluated electronic difference densities in phenol–water, phenoxy–water, and water, and we are suggesting that the representation of this quantity gives an interesting picture of the electronic density rearrangement induced by hydrogen bond interactions in phenol–water clusters. © 2001 John Wiley & Sons, Inc. Int J Quantum Chem, 2001     

Theoretical study of the desorption of neutral and ionic alkali metal atoms from the excited Li+(H2O)n = 1-4 and Na+(H2O)n = 1-4 cluster models: Electronic excitation charge transfer

In this work, the potential energy curves of several low-lying excited states of M⁺(H₂O)_{n = 1-4} (M = Li and Na) clusters with one M─O bond, related to the stretching of their M─O bond, were calculated in the gas phase. The time-dependent density functional theory and direct-symmetry-adapted cluster-configuration interaction were used in this study separately. Theoretical calculations showed that the charge transfer occurred between M⁺ and (H₂O)_n in the excited clusters so that the neutral metal atom was obtained at the dissociation limit of the potential curves. The excited potential curves of clusters were also calculated in the presence of the electrostatic field of water (EFW), and it was found that the charge transfer was blocked in the presence of EFW. The effect of the size of the (H₂O)_n cluster on the shape of the excited potential curves was investigated to observe how the M─O bond was affected in the excited states depending on the (H₂O)_n size. It was found that the increase in the size of the (H₂O)_n cluster increased the number of bonding excited potential curves. The difference between the electron density of the excited and ground electronic states was calculated to see how the charge transfer was affected by the size of the (H₂O)_n cluster.     

Structural, energetic, electronic, bonding, and vibrational properties of Ga3O, Ga3O2, Ga3O3, Ga2O3, and GaO3 clusters

The results of density functional theory based calculations on Ga3O, Ga3O2, Ga3O3, Ga2O3, and GaO3 clusters are reported here. A preference for planar arrangement of the constituent atoms maximizing the ionic interactions is found in the ground state of the clusters considered. The sequential oxidation of the metal-excess clusters increases the binding energy, but the sequential removal of a metal atom from the oxygen-excess clusters decreases the binding energy. The increase in the oxygen to metal ratio in these clusters is accompanied by increase in both electron affinity and ionization potential. The ionization induced structural distortions in the neutral clusters are relatively small, except those for Ga3O2. In anionic (cationic) clusters, the added (ionized) electron is shared by the Ga atoms, except in the case of GaO3. The vibrational frequencies and charge density analysis reveal the importance of the ionic Ga-O bond in stabilizing the gallium oxide clusters considered in this study.     

CO与Pdn(n=1-8)团簇的相互作用

采用密度泛函理论对CO与钯团簇的相互作用进行了系统研究. 结果表明, PdnCO(n=1-8)体系的最低能量结构是在Pdn(n=1-8)团簇最低能量结构或亚稳态结构的基础上吸附CO生长而成; CO的吸附以端位吸附为主, 其吸附没有改变Pdn团簇的结构; CO分子在Pdn团簇表面发生的是非解离性吸附. 与优化的CO键长(0.1166 nm)相比, 除了n=2, 团簇PdnCO的C—O键长为0.1167-0.1168 nm, 吸附后C—O键长变化较小, CO分子被活化程度较小. 电荷集居数分析表明, CO的吸附对Pdn团簇的影响比较小; 二阶能量差分表明, n=4,6的团簇是相对稳定的团簇.     

Density Functional Study on Structure and Bonding Nature of CO Adsorbed Rh<Stack><Subscript>n</Subscript><Superscript>+/−</Superscript></Stack> (n = 2–8) Clusters

Systematic investigations on lowest energy CO adsorbed neutral and ionic Rh_n (n = 2–8) clusters in the gas phase are performed with all electron relativistic method using density functional theory within the generalized gradient approximation. Geometrical and electronic parameters are evaluated to understand the bonding nature as well as the binding interaction of CO on stable neutral and ionic rhodium clusters. Anionic adducts exhibit higher adsorption energy along with smaller Rh–C and larger C–O bond distances in comparison to neutral and cationic Rh_nCO (n = 2–8) clusters. Synergic bond formation is noticed between rhodium and carbon atom of CO molecule due to back-donation of electron from metal d-orbitals to π* orbital of CO in the case of anionic and some neutral clusters. Angular and Mülliken charge analysis along with electron density distribution suggest that anionic rhodium clusters form strong bond with carbon atom of CO than the neutral and cationic clusters.     

O与O2在Au团簇上吸附的密度泛函理论研究

采用基于密度泛函理论(DFT)的Dmol³程序系统研究了O原子与O₂在 Au₁₉与Au₂₀团簇上的吸附反应行为. 结果表明: O在Au₁₉团簇顶端洞位上的吸附较Au₂₀强; 在侧桥位吸附强度相近. O与O₂在带负电Au团簇上吸附较强, 在正电团簇吸附较弱. 从O―O键长看, 当金团簇带负电时, O―O键长较长, 中性团簇次之, 正电团簇中O―O键长较短, 因而O₂活化程度依次减弱. 电荷布居分析表明, Au团簇带负电时, O与O₂得电子数较中性团簇多, 而团簇带正电时, 得电子数较少. 差分电荷密度(CDD)表明, O₂与Au团簇作用时, 金团簇失电子, O₂的π^*轨道得电子, 使O―O键活化. O₂在Au₁₉^-团簇上解离反应活化能为1.33 eV, 较中性团簇低0.53 eV; 而在Au₁₉⁺上活化能为2.27 eV, 较中性团簇高0.41 eV, 这与O₂在不同电性Au₁₉团簇O―O键活化规律相一致.     

Geometric, electronic, and bonding properties of AuNM (N = 1-7, M = Ni, Pd, Pt) clusters

Employing first-principles methods, based on density functional theory, we report the ground state geometric and electronic structures of gold clusters doped with platinum group atoms, Au(N)M (N = 1-7, M = Ni, Pd, Pt). The stability and electronic properties of Ni-doped gold clusters are similar to that of pure gold clusters with an enhancement of bond strength. Due to the strong d-d or s-d interplay between impurities and gold atoms originating in the relativistic effects and unique properties of dopant delocalized s-electrons in Pd- and Pt-doped gold clusters, the dopant atoms markedly change the geometric and electronic properties of gold clusters, and stronger bond energies are found in Pt-doped clusters. The Mulliken populations analysis of impurities and detailed decompositions of bond energies as well as a variety of density of states of the most stable dopant gold clusters are given to understand the different effects of individual dopant atom on bonding and electronic properties of dopant gold clusters. From the electronic properties of dopant gold clusters, the different chemical reactivity toward O(2), CO, or NO molecule is predicted in transition metal-doped gold clusters compared to pure gold clusters.     

［60］富勒烯硫桥键联1,3-二硫杂环戊烯基-2-硫酮衍生物的理论研究及合成和表征

摘要为了获得具有长寿命电荷分离态的［60］富勒烯-富硫衍生物有机功能分子, 我们设计了用单键硫桥键联［60］富勒烯和硫酮衍生物的分子7和8, 用半经验AM1方法得出最低能量的几何结构, 在此基础上用密度泛函(DFT) B3LYP/3-21G方法,对其进行计算, 得出电子相关的优化参数, 预测其稳定性. 发现用硫桥链接后, 硫酮部分和C60部分之间的距离比文献报道的无硫桥链接的C60衍生物要短, 且能隙变小, 使得在光激发下形成激发态较容易. 同时用硫酮烯砜6与C60发生Diels-Alder环加成反应, 合成了这两个新化合物, 用TOF-MS， 1H NMR， 13C NMR, IR， UV-Vis和荧光光谱等进行了结构表征.     

氢对PbZr0.5Ti0.5O3在氮氢混合气氛退火中铁电性能的影响

采用基于密度泛函理论的第一性原理, 针对PbZr0.5Ti0.5O3无氢和含氢的顺电相和铁电相的二层超晶胞, 分别计算了Ti沿c轴位移时体系总能量的变化、电子云密度分布和Ti—O、Zr—O和H—O的重叠布居数. 结果表明, 含氢铁电相的Ti—O键和Zr—O键相对无氢铁电相明显减弱, 氢氧之间较强的轨道杂化使它们趋于形成共价键; 晶格中氢氧键的钉扎效应使含氢情况下的顺电相能量始终低于铁电相能量, 说明氢的引入阻碍了PbZr0.5Ti0.5O3从立方顺电相到四方铁电相的相变, 并推断其为含氢气氛退火过程中PbZr0.5Ti0.5O3铁电性能下降的主要原因之一. 所得结果对于深入理解铁电材料在氮氢混合气氛退火后铁电性能下降的微观机制具有参考价值.     

1,2,3-三氮杂苯-水复合物氢键相互作用

Density functional theory B3LYP method with 6-31++G** basis was used to optimize the geometries of the ground states for 1,2,3-triazine-(H2O)n (n=1,2,3) complexes. All calculations indicate that the 1,2,3-triazine-water complexes in the ground states have strong hydrogen-bonding interaction, and the complex having a N…H-O hydrogen bond and a chain of water molecules which is terminated by a O…H-C hydrogen bond is the most stable. The H-O stretching modes of complexes are red-shifted relative to that of the monomer. In addition, the Natural bond orbit (NBO) analysis indicates that the intermolecular charge transfer between 1,2,3-triazine and water is 0.0222e, 0.0261e and 0.0273e for the most stable 1:1, 1:2 and 1:3 complexes, respectively. The first singlet (n, π*) vertical excitation energy of the monomer 1,2,3-triazine and the hydrogen-bonding complexes of 1,2,3-triazine-(H2O)n were investigated by time-dependent density functional theory.     

Heteroatom Effects on Electronic Excited State Hydrogen Bonding of Fluorenone‐Based Molecular Materials

In this work, the geometry optimizations in the ground state and electronic excitation energies and corresponding oscillation strengths of the low‐lying electronically excited states for the isolated fluorenone (FN) and FN‐based molecular monomers, the relatively hydrogen‐bonded dimers, and doubly hydrogen‐bonded trimers, are calculated by the density functional theory and time‐dependent density functional theory methods, respectively. We find the intermolecular hydrogen bond CO···H O is strengthened in some of the electronically excited states of the hydrogen‐bonded dimers and doubly hydrogen‐bonded trimers, because the excitation energy in a related excited state decrease and electronic spectral redshift are induced. Similarly, the hydrogen bond CO···H O is weakened in other excited states. On this basis, owing to the important difference of electronegativity, heteroatoms S, Se, and Te that substitute for the O atom in the carbonyl group of the FN molecule have a significant effect on the strength of the hydrogen bond and the spectral shift. It is observed that the hydrogen bond CTe···H O is too weak to be formed. When the CS and CSe substitute for CO, the strength of the hydrogen bonds and electronic spectra frequency shift are significantly changed in the electronic excited state due to the electron transition type transformation from the ππ* feature to σπ* feature. © 2013 Wiley Periodicals, Inc. Heteroatom Chem 24:153–162, 2013; View this article online at wileyonlinelibrary.com . DOI 10.1002/hc.21075     

Clusters of glycolic acid with three to six water molecules

Semiempirical, ab initio, and density functional theory calculations are used to locate many low-energy minima on the potential energy surfaces of the CH2OHCOOH-(H2O)n complexes with n = 3,4,5,6. In the clusters with three, four, and five water molecules, the lowest-energy structure consists of a (H2O)n complex, not necessarily of lowest energy, hydrogen bonded to the carboxylic group of the glycolic acid. The lowest-energy structure for n = 6 is similar except that the water hexamer is hydrogen bonded to both the carboxylic and alpha-hydroxyl groups of the acid. In all the lowest-energy clusters, the intramolecular hydrogen bond remains intact in the glycolic acid.     

AlnO2±团簇结构的几何特征与稳定性

采用密度泛函理论(DFT)的B3LYP方法,在6-311G**水平上对AlnO2±(n=1-10)团簇的几何和电子结构进行了理论计算.讨论了混合团簇的基态结构与振动频率,以及电荷转移与分子轨道.结果表明,AlnO2±(n>1)团簇的基态结构都是2个较小的AlmO(m相似文献   

Time-dependent Density Functional Theory Study on the Electronically Excited States of N-Methylformamide in Aqueous Solution

Excited-state hydrogen-bonding dynamics of N-methylformamide (NMF) in water has been investigated by time-dependent density functional theory (TDDFT) method. The ground-state geometry optimizations were calculated by density functional theory (DFT) method, while the electronic transition energies and corresponding oscillation strengths of the low-lying electronically excited states of isolated NMF, water monomers and the hydrogen-bonded NMF-H 2 O were calculated by TDDFT method. According to Zhao's rule on the excited-state hydrogen bonding dynamics, our results demonstrate that the intermolecular hydrogen bond C=O···O-H is strengthened and weakened in different electronically excited states. The hydrogen bond strengthening and weakening in the electronically excited state plays an important role in the photophysics of NMF in solutions.     

Structures and vibrational spectroscopy of partially reduced gas-phase cerium oxide clusters

This work demonstrates that the most stable structures of even small gas-phase aggregates of cerium oxide with 2-5 cerium atoms show structural motifs reminiscent of the bulk ceria. This is different from main group and transition metal oxide clusters, which often display structural features that are distinctly different from the bulk structure. The structures of Ce(2)O(2)(+), Ce(3)O(4)(+), and (CeO(2))(m)CeO(+) clusters (m = 0-4) are unambiguously determined by a combination of global structure optimizations at the density functional theory level and infrared vibrational predissociation spectroscopy of the cluster-rare gas atom complexes. The structures of Ce(2)O(2)(+) and Ce(2)O(3)(+) exhibit a Ce-O-Ce-O four-membered ring with characteristic absorptions between 430 and 680 cm(-1). Larger clusters have common structural features containing fused Ce-O-Ce-O four-membered rings which lead to intense absorption bands at around 500 and 650 cm(-1). Clusters containing a terminal Ce=O bond show a characteristic absorption band between 800 and 840 cm(-1). For some cluster sizes multiple isomers are observed. Their individual infrared signatures are identified by tuning their relative population through the choice of He, Ne or Ar messenger atoms. The present results allow us to benchmark different density functionals which yield different degrees of localization of unpaired electrons in Ce 4f states.     

Molybdenum oxides versus molybdenum sulfides: geometric and electronic structures of Mo₃X(y)⁻ (X = O, S and y = 6, 9) clusters

We have conducted a comparative computational investigation of the molecular structure and water adsorption properties of molybdenum oxide and sulfide clusters using density functional theory methods. We have found that while Mo?O?? and Mo?S?? assume very similar ring-type isomers, Mo?O?? and Mo?S?? clusters are very different with Mo?O?? having a ring-type structure and Mo?S?? having a more open, linear-type geometry. The more rigid ∠(Mo-S-Mo) bond angle is the primary geometric property responsible for producing such different lowest energy isomers. By computing molecular complexation energies, it is observed that water is found to adsorb more strongly to Mo?O?? than to Mo?S??, due to a stronger oxide-water hydrogen bond, although dispersion effects reduce this difference when molybdenum centers contribute to the binding. Investigating the energetics of dissociative water addition to Mo?X?? clusters, we find that, while the oxide cluster shows kinetic site-selectivity (bridging position vs terminal position), the sulfide cluster exhibits thermodynamic site-selectivity.     

s-四嗪-水簇复合物的理论研究

用量子化学B3LYP方法和6-31＋＋G**基函数研究了s-四嗪-水簇复合物基态分子间相互作用, 并进行了构型优化和频率计算, 分别得到无虚频稳定的s-四嗪-(水)₂复合物、s-四嗪-(水)₃复合物和s-四嗪-(水)₄复合物6个、9个和12个. 复合物存在较强的氢键作用, 复合物结构中形成一个N…H—O氢键并终止于O…H—C氢键的氢键水链构型最稳定. 经基组重叠误差和零点振动能校正后, 最稳定的1∶2, 1∶3和1∶4(摩尔比)复合物的结合能分别是41.35, 70.9和 94.61 kJ/mol. 振动分析显示氢键的形成使复合物中水分子H—O键对称伸缩振动频率减小(红移). 研究表明N…H键越短, N…H—O键角越接近直线, 稳定化能越大, 氢键作用越强. 同时, 用含时密度泛函理论方法在TD-B3LYP/6-31＋＋G**水平计算了s-四嗪单体及其氢键复合物的第一¹(n, p*)激发态的垂直激发能.     

Glucose interaction with Au,Ag, and Cu clusters: Theoretical investigation

Interactions of α‐D ‐glucose with gold, silver, and copper metal clusters are studied theoretically at the density functional theory (CAM‐B3LYP) and MP2 levels of theory, using trimer clusters as simple catalytic models for metal particles as well as investigating the effect of cluster charge by studying the interactions of cationic and anionic gold clusters with glucose. The bonding between α‐D ‐glucose and metal clusters occurs by two major bonding factors; the anchoring of M atoms (M = Cu, Ag, and Au) to the O atoms, and the unconventional M…H? O hydrogen bond. Depending on the charge of metal clusters, each of these bonds contributes significantly to the complexation. Binding energy calculations indicate that the silver cluster has the lowest and gold cluster has the highest affinity to interact with glucose. Natural bond orbital analysis is performed to calculate natural population analysis and charge transfers in the complexes. Quantum theory of atoms in molecules was also applied to interpret the nature of bonds. © 2012 Wiley Periodicals, Inc.     

Theoretical investigation of adsorption of molecular oxygen on small copper clusters

Adsorption of molecular oxygen on Cu(N) (N = 2-10) clusters is investigated using density functional theory under the generalized gradient approximation of Perdew-Burke-Ernzerhof. An extensive structure search is performed to identify low-energy conformations of Cu(N)O(2) complexes. Optimal adsorption sites are assigned for low-energy isomers of the clusters. Among these are some new arrangements unidentified heretofore. Distinct size dependences are noted for the ground state Cu(N)O(2) complexes in stability, adsorption energy, Cu-O(2) bond strength, and other characteristic quantities. Cu(N)O(2) with odd-N tend to have larger adsorption energies than their even-N neighbors, with the exception of Cu(6)O(2), which has a relatively large adsorption energy resulting from the adsorption-induced 2D-to-3D structural transition in Cu(6). The energetically preferred spin-multiplicity of all the odd-N Cu(N)O(2) complexes is doublet; it is triplet for N = 2 and 4 and singlet for N = 6, 8, and 10.