Theoretical study of hydrogen and dihydrogen bond interaction of B6H10 with the HF molecule

Ab initio calculations were used to analyze the interactions of B₆H₁₀ with an HF molecule at the MP2/6-311++g(d,p) and B3LYP/6-311++g(d,p) computational levels. B₆H₁₀ could interact with HF through both its terminal (H_t) and bridged (H_b) hydrogens. The interaction of H_t and H_b of B₆H₁₀ with HF could result in the formation of H_t···H and H_b···F dihydrogen and hydrogen bond complexes, respectively. The obtained structures have been analyzed with the Atoms in Molecules methodology.     

Theoretical investigations on analytical potential energy function and spectroscopic parameters for the state b3Πu of dimer 7Li2

The SAC‐CI (symmetry‐adapted‐cluster configuration‐interaction) method presented in Gaussian 03 program package is applied to investigate the adiabatic potential energy curves (PECs) of ⁷Li₂(b³Π_u). These calculations are performed at numbers of basis sets, such as 6‐311++G(3df,3pd), 6‐311++G(2df,2pd), 6‐311++G(df,pd), D95V++, D95(3df,3pd), D95(d,p), cc‐PVTZ, 6‐311++G and 6‐311++G(d,p). All the ab initio calculated points are fitted to the analytic Murrell‐Sorbie functions and then used to compute the spectroscopic parameters. The analytic potential energy function (APEF) for this b³Π_u state is reported. By comparison, the spectroscopic parameters reproduced by the APEF attained at 6‐311++G(2df,2pd) are found to be very close to the latest experimental findings. With the APEF obtained at the SAC‐CI/6‐311++G(2df,2pd) level of theory, a total of 62 vibrational states is found when J = 0. The complete vibrational levels, classical turning points, inertial rotation and centrifugal distortion constants for these vibrational states are also reported. The reasonable dissociation limit for this state is deduced using the calculated results at present. © 2007 Wiley Periodicals, Inc. Int J Quantum Chem, 2007     

N2O…HOCl复合物结构和性质的理论研究

分别在DFT-B3LYP和MP2/6-311++G**水平上求得HOCl + N2O复合物势能面上的六种(S1, S2, S3, S4, S5和S6)和四种(S1, S2, S4和S5)构型. 频率分析表明,其中的S1和S3为过渡态,其它为稳定构型. 在复合物S3, S5 和S6中,HOCl 单体的σ*(5O-6H)作为质子供体,与N2O单体中作为质子受体的3O原子相互作用,形成氢键结构,而在氢键复合物S2中, 质子受体为N2O单体中的端1N原子;复合物S1中,HOCl分子的σ*(5O-4Cl)作为质子供体与N2O分子中的端1N原子(质子受体)相互作用,形成卤键结构,而复合物S4中的卤键结构的质子受体为N2O分子中的端3O原子. 经B3LYP/6-311++G**水平上的计算,考虑了基组重叠误差(BSSE)校正的单体间相互作用能在-1.56 ~ -8.73 kJ·mol-1之间. 采用自然键轨道理论(NBO)对两种单体间相互作用的本质进行了考查,并通过分子中原子理论(AIM)分析了复合物中氢键和卤键键鞍点处的电子密度拓扑性质.     

FT-IR, FT-Raman vibrational spectra and molecular structure investigation of 2-chloro-4-methylaniline: A combined experimental and theoretical study

In this work, the experimental and theoretical vibrational spectra of 2-chloro-4-methylaniline (2Cl4MA, C₇H₈NCl) were studied. FT-IR and FT-Raman spectra of 2Cl4MA in the liquid phase have been recorded in the region 4000–400 cm⁻¹ and 3500–50 cm⁻¹, respectively. The structural and spectroscopic data of the molecule in the ground state have been calculated by using Hartree-Fock (HF) and density functional method (B3LYP) with the 6-31G(d), 6-31G(d,p), 6-31+G(d,p), 6-31++G(d,p) and 6-311G(d), 6-311G(d,p), 6-311+G(d,p), 6-311++G(d,p) basis sets. The vibrational frequencies have been calculated and scaled values have been compared with experimental FT-IR and FT-Raman spectra. The observed and calculated frequencies are found to be in good agreement. The complete assignments were performed on the basis of the total energy distribution (TED) of the vibrational modes, calculated with scaled quantum mechanics (SQM) method. The DFT-B3LYP/6-311++G(d,p) calculations have been found more reliable than the ab initio HF/6-311++G(d,p) calculations for the vibrational study of 2Cl4MA. The optimized geometric parameters (bond lengths and bond angles) were compared with experimental values of aniline and p-methylaniline molecules.     

Isomerization of B6, B6 − and B6 + clusters

The interconversions between isomers with the same spin multiplicity of neutral B₆ and charged B₆ ^? and B₆ ⁺ clusters have been investigated at the B3LYP/6-311+G* level of theory, including determination of the minimum energy pathways with transition states connecting the corresponding reactants and products. In dynamic calculations, 26 isomers were optimized, including 11 novel isomers. In order to further refine the energies, single-point B3LYP/6-311+G(3df) calculations were carried out on the corresponding B3LYP/6-311+G* geometries of all isomers of B₆, B₆ ^? and B₆ ⁺ and the corresponding isomerization transition states. The stability of each isomer of B₆ (singlet and triplet states), B₆ ^? (doublet state) and B₆ ⁺ (doublet state) was analyzed from both thermodynamic and dynamic viewpoints.     

Isomerizations of CH3SO2: Quantum Chemistry and Topological Study

The structures, stabilities and the isomerization reactions of CH₃SO₂ isomers in a doublet electronic state have been studied at B3LYP/6‐311+ +G (d,p), MP2/6‐311++G (d,p) and CCSD(T)/6‐311++G (d,p) levels. The three different levels of calculation give the similar results: thirteen minimum isomers were located and they were connected by eleven transition states. Among the thirteen isomers, cis‐CH₃OSO, trans‐CH₃OSO and CH₃SO₂ are the most stable species, and they should be detected easily in experiment. This is well consistent with the experimental result. These isomers could isomerize to each other by chemical bond vibration, chemical bond rotation and atom migration. The non‐planar ring structure transition state (STS), which was found in this paper, extended the concept of ring STS to the non‐planar systems.     

Quantum chemical and experimental studies on the structure and vibrational spectra of substituted 2-pyranones

A systematic study on the structural characteristics of the 2-pyranone ring containing molecules with bromine, nitrile, and amide substituents at the C-3 position in the ring is conducted in the electronic ground (S ₀) state by DFT calculations using the B3LYP/6-311++G** method. The geometrical structure of the bromine substituted compound, which shows potent hepatoprotective activity, is studied both in the ground (S ₀) and first excited singlet (S ₁) states using RHF/6-311++G** and CIS/6-311++G** methods respectively. The molecules are found to exist in two isomeric forms gauche and trans that have the enthalpy difference of less than 3.32 kcal/mol; the latter is the preferred orientation in the gaseous phase. The S ₁ state is a ¹(π,π*) state that arises π-electron transfer from the region of a double bond in the pyranone ring to the region of the internuclear bond connecting the 2-pyranone and benzene rings. A complete vibrational analysis is conducted for the 3-bromo-6-(4-chlorophenyl)-4-thiomethyl-2H-pyran-2-one molecule based on the experimental infrared spectra in the 50–4000 cm⁻¹ region and DFT/6- 311++G** computations of vibrational frequencies for the gauche and trans isomeric forms. Spectral assignments based on the potential energy distribution along the internal coordinates confirm the nonplanar structure of the molecule.     

Fluorine Substitution Effects on Flexibility and Tunneling Pathways: The Rotational Spectrum of 2‐Fluorobenzylamine

The effect of ring fluorination on the structural and dynamical properties of the flexible model molecule 2‐fluorobenzylamine has been studied by rotational spectroscopy in free‐jet expansion and quantum chemical methods. The complete potential energy surface originating from the flexibility of the aminic side chain has been calculated at the B3LYP/6‐311++G** level of theory and the stable geometries were also characterized with MP2/6‐311++G**. The rotational spectra show the presence of two of the predicted four stable conformers: the global minimum (I), in which the side chain’s dihedral angle with the phenyl plane is almost perpendicular, is stabilized by an intramolecular hydrogen bond between the fluorine atom and one hydrogen of the aminic group; and a second conformer II (E_II?E_I≈5 kJ mol^?1) in which the dihedral angle is smaller and the amino group points towards the aromatic ortho hydrogen atom. This conformation is characterized by a tunneling motion between two equivalent positions of the amino group with respect to the phenyl plane, which splits the rotational transition. The ortho fluorination increases, with respect to benzylamine, the tunneling splitting of this motion by four orders of magnitude. The motion is analyzed with a one‐dimensional flexible model, which allows estimation of the energy barrier for the transition state as approximately 8.0 kJ mol^?1.     

Ab initio quantum chemical studies of the reactions of CF3CFHO2 with HO2

The potential energy surface (PES) for the CF₃CFHO₂+HO₂ reaction has been theoretically investigated using the DFT [B3LYP/6‐311G(d,p)] and B3LYP/6‐311++G(3df,3pd)//B3LYP/6‐311G(d,p) levels of theory. Both singlet and triplet PESs are investigated. The reaction mechanism on the triplet surface is simple. It is revealed that the formation of CF₃CFHOOH+³O₂ is the dominant channel on the triplet surface. On the basis of the ab initio data, the total rate constants for the reaction CF₃CFHO₂+HO₂ in the T = 210–500 K range have been computed using conventional transition state theory with Wigner's tunneling correction and have been fitted by a rate constant expression as k = 1.04 ×10^?12(cm³ molecule^?1 s^?1) exp (700.33/T). Calculated transition state rate constants with Wigner's tunneling correction for the reaction CF₃CFHO₂+HO₂ are in good agreement with the available experimental values. © 2006 Wiley Periodicals, Inc. Int J Quantum Chem, 2007     

An investigation on the reaction mechanism of the F2+Cl2→2ClF using the B3LYP method

The reaction mechanism of F₂+Cl₂→2ClF has been investigated with the density functional theory at the B3LYP/6‐311G* level. Six transition states have been found for the three possible reaction paths and verified by the normal mode vibrational and IRC analyses. Ab initio MP2/6‐311G* geometry optimizations and CCSD(T)/6‐311G(2df)//MP2/6‐311G* single‐point energy calculations have been performed for comparison. It is found that when the F₂ (or Cl₂) molecule decomposes into atoms first and then the F (or Cl) atom reacts with the molecule Cl₂ (or F₂) nearly along the molecular axis, the energy barrier is very low. The calculated energy barrier of F attacking Cl₂ is zero and that of Cl attacking F₂ is only 15.57 kJ?mol^?1 at the B3LYP level. However, the calculated dissociation energies of F₂ and Cl₂ are as high as 145.40 and 192.48 kJ?mol^?1, respectively. When the reaction proceeds through a bimolecular reaction mechanism, two four‐center transition states are obtained and the lower energy barrier is 218.69 kJ?mol^?1. Therefore, the title reaction F₂+Cl₂→2ClF is most probably initiated from the atomization of the F₂ molecule and terminated by the reaction of F attacking Cl₂ nearly along the Cl? Cl bond. MP2 calculations lead to the same conclusion, but the geometry of TS and the energy barrier are somewhat different. © 2002 John Wiley & Sons, Inc. Int J Quantum Chem, 2002     

Isomerization study of C5H5NO molecules

The complex potential energy surface (PES) for the isomerization of C₅H₅NO species, including 18 isomers and 23 interconversion transition states, is probed theoretically at the B3LYP/6‐311++G(d,p) and MP2//B3LYP/6‐311++G(d,p) levels of theory. The geometries and relative energies for various stationary points were determined. The zero‐point vibrational energy (ZPVE) corrections have been made to calculate the reliable energy. We predicted a six‐membered ring structure as a global minima isomer I, which is 118.49 and 131.48 kcal · mol^?1 more stable than the least stable, four‐ and three‐membered ring isomer VIII at B3LYP and MP2//B3LYP levels of theory, respectively. The isomers and interconversion transition states have verified by frequency calculation. The intrinsic reaction coordinates (IRC) calculations have been performed to confirm that each transition state is linked by the desired reactants and products. The isomer stability has been studied using relative energies, chemical hardness, and chemical potential. © 2006 Wiley Periodicals, Inc. Int J Quantum Chem, 2007     

Theoretical analysis of the initial stages of the thermal decomposition of trinitromethane

The hybrid method B3LYP/6-311G* of density functional theory is used to optimize the geometries of nitroform and some intermediates of its decomposition (CH(NO₂)₂, CH(NO₂)₂ONO, CH(NO₂), and HC(O)NO) and to locate the transition states of the dissociation and isomerization reactions involving these species. The heat of formation of nitroform and of the intermediates of its decomposition and the Gibbs energies of activation of the reactions examined are calculated using the modern ab initio multilevel procedures G2M(CC5) and G2. The high-pressure limits of the rate constants of these reactions in the temperature range 300–2000 K are calculated using transition state theory or its variational analogue.     

DFT studies on the multi‐channel reaction of CH3S+NO2

The mechanisms for the reaction of CH₃S with NO₂ are investigated at the QCISD(T)/6‐311++G(d,p)//B3LYP/6‐311++G(d,p) on both single and triple potential energy surfaces (PESs). The geometries, vibrational frequencies, and zero‐point energy (ZPE) correction of all stationary points involved in the title reaction are calculated at the B3LYP/6‐311++G(d,p) level. More accurate energies are obtained at the QCISD(T)/6‐311++G(d,p). The results show that 5 intermediates and 14 transition states are found. The reaction is more predominant on the single PES, while it is negligible on the triple PES. Without any barrier height for the whole process, the main channel of the reaction is to form CH₃SONO and then dissociate to CH₃SO+NO. © 2006 Wiley Periodicals, Inc. Int J Quantum Chem, 2007     

L-缬氨酸旋光异构的两种光反应可能途径

利用密度泛函理论(DFT)和从头算分子轨道理论对L-缬氨酸的旋光异构光反应机理进行了研究. 分别用B3LYP和MP2方法在6-311++G(d, p)基组级别上全优化得到了S₀和T₁态反应路径上的反应物、产物、中间体以及过渡态结构的几何构型, 给出了反应能垒, 利用含时密度泛函理论(TD-DFT)中的B3LYP/6-311++G(d, p)方法优化得到了S₁态反应路径上的平衡态几何构型. 通过分析反应途径上各个驻点的几何构型特征, 确定了L-缬氨酸在激发态可能通过手性碳上的氢原子以羰基氧或氨基氮为中转媒介发生质子迁移来完成旋光异构反应. 进一步用自洽反应场理论中的极化连续模型(PCM)方法探讨了溶剂化效应对旋光异构反应机理的影响.     

Ab initio studies of push–pull systems

Twelve push–pull ethylene derivatives, NH₂CH=CHX, NH₂C≡CCH=CHX, and ⁻OCHX=CHX (with X=BH₂, C≡N, NO₂, and CH₂ ⁺) have been studied by ab initio calculations. The rotational barrier around the central double bond was chosen as a probe for push–pull effects, as push–pull effects would remove electron density from the central double bond. The amount of reduction of double bond character will increase with the contribution of the zwitterionic resonance hybrid structure. Complete geometry optimizations and calculations of vibrational frequencies were performed for all minima and transition state structures of these 12 systems. The calculations were carried out with the B3LYP and MP2 methods using the 6-311+G(d,p) and the 6-311++G(d,p) basis sets. All the systems investigated exhibited properties consistent with push–pull effects such as elongated C=C double bonds, dipolar electronic structures, and reduced barriers to internal rotation.     

Conformers and intramolecular hydrogen bonding of the oxalic acid monomer and its anions

Density functional theory, B3LYP/6‐31G** and B3LYP/6‐311+G(2d,p), and ab initio MP2/6‐31G** calculations have been carried out to investigate the conformers, transition states, and energy barriers of the conformational processes of oxalic acid and its anions. QCISD/6‐31G** geometrical optimization is also performed in the stable forms. Its calculated energy differences between the two most stable conformers are very near to the related observed value at 7.0 kJ/mol. It is found that the structures and relative energies of oxalic acid conformers predicted by these methods show similar results, and that the conformer L1 (C_2h) with the double‐interfunctional‐groups hydrogen bonds is the most stable conformer. The magnitude of hydrogen bond energies depends on the energy differences of various optimized structures. The hydrogen bond energies will be about 32 kJ/mol for interfunctional groups, 17 kJ/mol for weak interfunctional groups, 24 kJ/mol for intra‐COOH in (COOH)₂, and 60 kJ/mol for interfunctional groups in (COOH)COO⁻¹ ion if calculated using the B3LYP/6‐311+G(2d,p) method. © 2000 John Wiley & Sons, Inc. Int J Quant Chem 76: 541–551, 2000     

Density functional theory and topological analysis on the hydrogen bonds in cysteine–propanoic acid complexes

The complexes formed via hydrogen bonding interactions between cysteine and propanoic acid have been studied at the density three-parameter hybrid functional DFT-B3LYP/6-311++G(d,p) level regarding their geometries, energies, vibrational frequencies, and topological features of the electron density. The quantum theory of atoms in molecules (QTAIM) and natural bond orbital (NBO) analysis was employed to elucidate the interaction characteristics in cysteine–propanoic acid (Cys–Prop) complexes. More than 10 kinds of hydrogen bonds (H-bonds) including intra- and inter-molecular H-bonds have been found in Cys–Prop complexes. The results show that both the strength of H-bonds and the deformation are important factors for the stability of Cys–Prop complexes. The strongest H-bonds (O2H^A···O1^B and O2H^A···O1^B) exist in the most stable Cys–Prop complex. The stronger H-bonds formed between hydroxyl and O (or N) atom usually stronger than those involve C (or S) atom. Relationships between the electron density (ρ) of BCP and H-bond length as well as the Fock matrix element (F _ij) has also been investigated and used to study the nature of H-bonds. Moreover, the results show that the change of the bond length linearly correlates with the corresponding frequency shift.     

Theoretical study of the gas-phase thermolysis reaction of alkyl (ethyl,isopropyl, and tert-butyl) N,N-dimethylcarbamates and N,N-diethylcarbamates

Theoretical studies on the thermolysis in the gas phase of alkyl N,N-dialkylcarbamates were carried out using ab initio theoretical methods, at the MP2/6-31G(d), MP2/6-31++G(d,p) and MP2/6-311++G(2d,p)//MP2/6-31G(d) levels. The reactions have two steps: the first one corresponds to the formation of an alkene and a neutral dialkylcarbamic acid intermediate via a six-membered cyclic transition state; the second one is the decarboxylation of this intermediate via a four-membered cyclic transition state, leading to carbon dioxide and the corresponding dialkylamine. The progress of the reactions was followed by means of the Wiberg bond indices. The results indicate that the transition states have character intermediate between reactants and products, and the calculated synchronicities show that the reactions are slightly asynchronous. The bond-breaking processes are more advanced than the bond-forming ones, indicating a bond deficiency in the transition states. The rate constants calculated for all the reactions agree very well with the available experimental data.From the Proceedings of the 28th Congreso de Químicos Teóricos de Expresión Latina (QUITEL 2002)     

DFT study on the role of methanol solvent in Morita–Baylis–Hillman reaction

B3LYP/6‐311++G** calculations have been carried out to study the role of methanol solvent in the trimethylamine‐catalyzed Morita‐Baylis‐Hillman reaction between acraldehyde and formaldehyde with CPCM solvent method and supramolecular model with one explicit CH₃OH solvent molecule, respectively. The optimized geometries and energies of the reactant complexes, intermediates, transition states, and products of the two reaction channels (corresponding to the scenarios of syn‐ and anti‐acraldehyde, respectively) were obtained, and the relative energy profiles were completed. The results reveal that CH₃OH solvent molecules can stabilize the zwitterionic intermediates and largely reduce the barrier of H transfer process by taking part in the formation of the transition state in this process. C? C bond formation step is the rate‐determining step of the whole reaction cycle. © 2009 Wiley Periodicals, Inc. Int J Quantum Chem, 2009     

Cooperativity between the Halogen Bond and the Hydrogen Bond in H3N⋅⋅⋅XY⋅⋅⋅HF Complexes (X,Y=F,Cl, Br)

Ab initio calculations are used to provide information on H₃N???XY???HF triads (X, Y=F, Cl, Br) each having a halogen bond and a hydrogen bond. The investigated triads include H₃N???Br₂‐HF, H₃N???Cl₂???HF, H₃N???BrCI???HF, H₃N???BrF???HF, and H₃N???ClF???HF. To understand the properties of the systems better, the corresponding dyads are also investigated. Molecular geometries, binding energies, and infrared spectra of monomers, dyads, and triads are studied at the MP2 level of theory with the 6‐311++G(d,p) basis set. Because the primary aim of this study is to examine cooperative effects, particular attention is given to parameters such as cooperative energies, many‐body interaction energies, and cooperativity factors. The cooperative energy ranges from ?1.45 to ?4.64 kcal mol^?1, the three‐body interaction energy from ?2.17 to ?6.71 kcal mol^?1, and the cooperativity factor from 1.27 to 4.35. These results indicate significant cooperativity between the halogen and hydrogen bonds in these complexes. This cooperativity is much greater than that between hydrogen bonds. The effect of a halogen bond on a hydrogen bond is more pronounced than that of a hydrogen bond on a halogen bond.