A DFT Study of Thiophene Adsorption on the Rh（111） Surfaces

Thiophene adsorption on the Rh(111) surfaces has been investigated by density functional theory.The results show that the adsorption at the hollow and bridge sites is the most stable.The molecular plane of the thiophene ring is distorted,the C=C bond is stretched to 1.448  and the C-C bond is shortened to 1.390.The C-H bonds tilt 22～42oaway from the surface.The calculated adsorption geometries are in reasonable agreement with population analysis and density of states.The thiophene molecule obtains 0.74 electrons,reflecting the interaction between the lone pair of sulfur and the d-orbitals of metal.The reaction paths and transition states for desulfurization of the molecule have been investigated.The bridge adsorption structure of thiophene leads to a thiol via an activated reaction with an energetic barrier of 0.30 eV.This second step is slightly difficult,and dissociation into a C4H4 fragment and a sulfur atom is possible,with an energetic barrier of 0.40 eV.     

Theoretical Study on the Adsorption and Decomposition of Methanol over the Pt-Mo（111）/C Surface

The density functional theory(DFT) and self-consistent periodic calculation were used to investigate the methanol adsorption on the Pt-Mo(111)/C surface.The adsorption energies,equilibrium geometries and vibration frequencies of CH3OH on nine types of sites on the Pt-Mo(111)/C surface were predicted and the favorite adsorption site for methanol is the top-Pt site.Both sites of valence and conduction bands of doped system have been broadened,which are favorable for electrons to transfer to the cavity.The possible decomposition pathway was investigated with transition state searching and the calculation results indicate that the O-H bond is first broken,and then the methanol decomposes into methoxy.The activation barrier of O-H bond breaking with Pt-Mo catalyst is only 104.8 kJ mol-1,showing that carbon supported Pt-Mo alloys have promoted the decomposition of methanol.Comparing with the adsorption energies of CH3OH on the Pt(111)/C surface and that of CO,the adsorption energies of CO are higher,and Pt(111)/C is liable to be oxidized and loses the activity,which suggests that the catalyst Pt-Mo(111)/C is in favor of decomposing methanol and has better anti-poisoning ability than Pt(111)/C.     

A DFT Study of CO Adsorption on the Cu2O（111） Surface with Oxygen Vacancy

First-principles calculations based on density functional theory （DFr） and the generalized gradient approximation （GGA） have been used to study the adsorption of CO molecule on the Cu2O（111） oxygen-vacancy surface. Calculations indicate that the C-O bond is weakened upon adsorption compared with that over perfect surface. In addition, with the density increase of the defective sites, the adsorption energies of the defect-CO configuration increase whereas the C-O bond nearly remains constant.     

Density functional theory for adsorption of HCHO on the FeO（100） surface

The density functional theory (DFT) and periodic slab model were used to get information concerning the adsorption of HCHO on the FeO(100) surface. A preferred η2-(C,O)-di-σ four-membered ring adsorption conformation on the Fe-top site was found to be the most favorable structure with the predicted adsorption energy of 210.7 kJ/mol. The analysis of density of states, Mulliken population, and vibrational frequencies before and after adsorption showed clear weakening of the carbonyl bond, and high sp3 charact...     

Density Functional Study of the C Atom Adsorption on the α-Fe2O3 （001） Surface

The adsorption of C atoms on the α-Fe2O3(001) surface was studied based on density function theory(DFT) ,in which the exchange-correlation potential was chosen as the PBE(Perdew,Burke and Ernzerhof) generalized gradient approximation(GGA) with a plane wave basis set. Upon the optimization on different adsorption sites with coverage of 1/20 and 1/5 ML,it was found that the adsorption of C atoms on the α-Fe2O3(001) surface was chemical adsorption. The coverage can affect the adsorption behavior greatly. Under low coverage,the most stable adsorption geometry lied on the bridged site with the adsorption energy of about 3.22 eV;however,under high coverage,it located at the top site with the energy change of 8.79 eV. Strong chemical reaction has occurred between the C and O atoms at this site. The density of states and population analysis showed that the s,p orbitals of C and p orbital of O give the most contribution to the adsorption bonding. During the adsorption process,O atom shares the electrons with C,and C can only affect the outermost and subsurface layers of α-Fe2O3;the third layer can not be affected obviously.     

Density Functional Theory Study of HCN Adsorption on Small Gold Clusters

A theoretical study was carried out on the adsorption of hydrocyanic acid on small Aun （n ≤ 7） clusters using density functional methods. For HCN adsorption on gold clusters, no dependence was found with respect to the even-odd alternation in relation to the number of gold atoms in the cluster. The HCN molecule is adsorbed at simple adsorption sites （1-fold coordination）, perpendicular to the adsorption site. The largest adsorption energy is only about 74.61 kJ·mol^-1, which indicates that the HCN molecule does not decompose and the C-N bond retains triple bond, and that the C-H and C-N stretching frequencies are only weakly perturbed. The adsorbed C-N and C-H stretching frequencies are blue- and red-shifted compared with the values of free HCN, respectively.     

Density Functional Theory Study of C2Hx（x=4～6） Adsorption on the Fe（110） Surface

The density functional theory(DFT) and self-consistent periodic calculation were used to investigate the C2Hx(x = 4～6) species adsorption on the Fe(110) surface. The adsorption energy and equilibrium geometry of the species C2Hx(x = 4～6) on four possible sites(top,hcp,SB and LB) on the Fe(110) surface were predicted and compared. Mulliken charges and density of states analysis of the most stable site have been discussed. It is found that the species of C2H6 and C2H5 are adsorbed strongly on the Fe(110) surface with calculated adsorption energy of -80.24 and -178.89 kJ·mol-1 at the Fe-LB(long-bridge) ,respectively. However,the C2H4 is adsorbed strongly on the Fe(110) surface with calculated adsorption energies of -114.96 kJ·mol-1 at the top. The results indicate that the charge transferring process can be completed by chemisorption between Fe(110) surface and the species. Moreover,the chemical bands can be formed by chemisorptions between the Fe(110) surface and the species,too.     

A DFT Study of 2-Bromothiophene Adsorption on the Rh(111) Surface

<正>Adsorption behaviors of 2-bromothiophene on the Rh(111)surface were discussed with DFT.The results revealed that adsorption at the parallel hol site and bridge site was the most stable.After adsorption,bond length of 2-bromothiophene changed significantly.Molecular plane was distorted,and C-H(Br,S)in the molecule was oblique and upswept against the metal surface.Vertical adsorption site was less stable than the plane adsorption site,but there was no distortion for the thiophene ring after adsorption.Aromaticity of 2-bromothiophene was destroyed at the hol and bridge adsorption sites,and the carbon atom in the thiophene ring presented quasi-sp~3 hybridization.After adsorption at the parallel hol,2-bromothiophene obtained 0.86 electrons in total,and Rh(111)surface lost 2.08 electrons in all.     

Density Functional Theory Studies on the Adsorption of CO2 on Different CaO Surfaces

Carbon dioxide adsorbed on different kinds of CaO surfaces has been investigated with the help of the first principle density functional theory plane wave calculations. Various possible configurations have been considered and the calculated results showed that CO2 was strongly adsorbed by C atom bonded with the CaO （001） and （110） surfaces with adsorption energies of 1.38 and 3.22 eV, respectively. The adsorption of CO2 molecule on defect surfaces is complicated compared with that on the pristine surfaces. The adsorption energy of CO2 absorbed on the CaO（110） surface is larger than that of CaO（001） surface when the type of defect surface is the same.     

Density Functional Theory Study on the Adsorption of CN on Transition Metal M（100） （M = Ni,Pd, Pt,Cu, Ag and Au） Surfaces

The adsorption of cyanide on the top site of a series of transition metal M（100） （M = Cu, Ag, Au, Ni, Pd, Pt） surfaces via carbon and nitrogen atoms respectively, with the CN axis perpendicular to the surface, has been studied by means of density functional theory and cluster model. Geometry, adsorption energy and vibrational frequencies have been determined, and the present calculations show that the adsorption of CN through C-end on metal surface is more favorable than that via N-end for the same surface. The vibrational frequencies of CN for C-down configuration on surface are blue-shifted with respect to the free CN, which is contrary to the change of vibrational frequencies when CN is adsorbed by N-down structure. Furthermore, the charge transfer from surface to CN causes the increase of surface work function.     

噻吩在M(111)(M=Pd,Pt,Au)表面的吸附(英文)

采用密度泛函理论(DFT),选取DMol3程序模块,对噻吩在M(111)(M=Pd,Pt,Au)表面上的吸附行为进行了探讨.通过对噻吩在不同底物金属上的吸附能、吸附构型、Mulliken电荷布居、差分电荷密度以及态密度的分析发现,噻吩在Pd(111)面上的吸附能最大,Pt(111)面次之,Au(111)面最小.吸附后,噻吩在Au(111)面上的构型几乎保持不变,最终通过S端倾斜吸附于top位;噻吩在Pd(111)及Pt(111)面上发生了折叠与变形,环中氢原子向上翘起,最终通过环平面平行吸附于hollow位.此外,噻吩环吸附后芳香性遭到了破坏,环中碳原子发生sp3杂化,同时电子逐渐由噻吩向M(111)面发生转移,M(111)面上的部分电子也反馈给了噻吩环中的空轨道,这种协同作用最终导致了噻吩分子稳定吸附于M(111)面.     

噻吩在M(111)(M=Pd,Pt, Au)表面的吸附

采用密度泛函理论(DFT), 选取DMol³程序模块, 对噻吩在M(111) (M=Pd, Pt, Au)表面上的吸附行为进行了探讨. 通过对噻吩在不同底物金属上的吸附能、吸附构型、Mulliken 电荷布居、差分电荷密度以及态密度的分析发现, 噻吩在Pd(111)面上的吸附能最大, Pt(111)面次之, Au(111)面最小. 吸附后, 噻吩在Au(111)面上的构型几乎保持不变, 最终通过S端倾斜吸附于top 位; 噻吩在Pd(111)及Pt(111)面上发生了折叠与变形, 环中氢原子向上翘起, 最终通过环平面平行吸附于hollow 位. 此外, 噻吩环吸附后芳香性遭到了破坏, 环中碳原子发生sp³杂化, 同时电子逐渐由噻吩向M(111)面发生转移, M(111)面上的部分电子也反馈给了噻吩环中的空轨道, 这种协同作用最终导致了噻吩分子稳定吸附于M(111)面.     

Adsorption properties and vibrational spectra of propyne adsorbed on Rh(111). Comparison with other (111) metal surfaces

We have studied the adsorption properties of propyne on the Rh(111) surface by means of the generalized gradient approach of density functional theory using periodic slab models. The simulation of the vibrational spectra has permitted us to corroborate and complete the experimental band assignment and to confirm the adsorption site preference. Propyne prefers to sit on a 3-fold hollow site, with the C[triple bond]C axis parallel to a Rh-Rh bond and the molecular plane tilted away from the surface normal. The comparison between the adsorption behaviour of propyne on Rh(111) and on other (111) metal surfaces allows one to provide an explanation for the different reactivity observed experimentally.     

Au/Pd(111)双金属表面催化噻吩加氢脱硫的反应机理

采用密度泛函理论(DFT)计算了Pd(111)表面含有N(N=1-4)个Au原子数目时的表面形成能,选取最优构型进一步研究了噻吩在Au/Pd(111)双金属表面的吸附模式及加氢脱硫反应过程.结果表明:当Pd(111)表面含有1个Au原子时,其形成能最低.在Au/Pd(111)双金属表面噻吩初始吸附于Pd-Hcp-30°位时,其构型最稳定.在各加氢脱硫过程中,反应总体均放出热量.对于直接脱硫机理,其所需活化能较低,但脱硫产物较难控制;对于间接脱硫机理,反应最有可能按照顺式加氢方式进行,C―S键断裂开环时所需活化能最高,是反应的限速步骤.此外,与单一Au(111)面及Pd(111)面相比,Au/Pd(111)双金属表面限速步骤的反应能垒最低,表明AuPd双金属催化剂比Au、Pd单金属催化剂更有利于噻吩加氢脱硫反应的进行.     

Au/Pd(111)双金属表面催化噻吩加氢脱硫的反应机理

采用密度泛函理论（DFT）计算了Pd（111）表面含有N（N=1-4）个Au原子数目时的表面形成能,选取最优构型进一步研究了噻吩在Au/Pd（111）双金属表面的吸附模式及加氢脱硫反应过程. 结果表明：当Pd（111）表面含有1个Au原子时,其形成能最低. 在Au/Pd（111）双金属表面噻吩初始吸附于Pd-Hcp-30°位时,其构型最稳定. 在各加氢脱硫过程中,反应总体均放出热量. 对于直接脱硫机理,其所需活化能较低,但脱硫产物较难控制;对于间接脱硫机理,反应最有可能按照顺式加氢方式进行,C―S键断裂开环时所需活化能最高,是反应的限速步骤. 此外,与单一Au（111）面及Pd（111）面相比,Au/Pd（111）双金属表面限速步骤的反应能垒最低,表明AuPd双金属催化剂比Au、Pd单金属催化剂更有利于噻吩加氢脱硫反应的进行.     

Adsorption of thiols on the Pd(111) surface: a first principles study

Using density functional theory formalism, we have investigated the adsorption behavior of thiols on the Pd(111) surface. Two different thiol molecules, viz. (a) methane thiol and (b) thiophene 2-thiol (TSH), were used as model adsorbates for this purpose. The results revealed that whereas the methane thiol molecule undergoes spontaneous dissociative chemisorption onto the palladium surface, the adsorption of the thiophene 2-thiol molecule does not involve cleavage of the S-H bond, leading to weak interaction energy or physisorption. The variation in the adsorption behavior has been explained based on the difference in the electronic environment of the terminal sulfur atom. The nature of binding at the interface has been analyzed through calculation of the partial density of states of the sulfur atom at the interface.     

A first-principles study of (R)- and (S)-PPA Molecules on Cu(111)

The adsorption of (R)- and (S)-2-phenylpropionamide (PPA, C(9)H(11)ON) molecules on a Cu(111) surface has been investigated using the density functional method with supercell models. The adsorption orientations of both (R)- and (S)-PPA molecules on the surface are the same: the phenyl rings are approximately parallel to the Cu(111) surface and positioned in the hollow sites, the amino and methyl groups occupy two-bridge sites, and the carbonyl occupies the top site. After the adsorption, the bond lengths in the two enantiomers are almost unchanged, but the changes for two dihedral angles show differences, especially for (R)-PPA molecule. The first angles between the (N,C9,C7) plane and the (C9,C7,C6) plane are 19.4 and 0.7 degrees for (R)- and (S)-PPA molecules, respectively, and the second angles between the (C8,C7,C6) plane and the (C7,C6,C5) plane are 74.8 and 0.4 degrees for (R)- and (S)-PPA molecules, respectively. The adsorption energies of (R)- and (S)-PPA molecules are calculated to be -34 and -26 kJ mol(-1), respectively. The simulated scanning tunneling microscopy (STM) images of (R)- and (S)-PPA molecules on the Cu(111) surface display different features and are coincident with the experimental ones. The interaction between the adsorption molecule and the metal surface is found to be responsible for the discrimination of (R)- and (S)-PPA molecules on the surface.     

2-氯噻吩在 Rh(111) 表面吸附的密度泛函理论研究

 采用密度泛函理论探讨了 2-氯噻吩分子在 Rh(111) 表面上吸附行为. 结果表明, 平行的 hol 位及 bridge 位上的吸附最稳定. 吸附后, 2-氯噻吩键长发生明显变化, 分子平面被扭曲, 分子中 C–H(Cl, S) 相对于金属表面倾斜上翘. 垂直吸附模式不如平行吸附模式稳定, 但吸附后噻吩环未发生变形. hol 及 bridge 吸附模式下 2-氯噻吩的芳香性已遭破坏, 噻吩环上的碳原子呈现准 sp3 杂化. 在平行的 hol 位吸附后, 2-氯噻吩环累计得到 0.77 个电子, 而 Rh(111) 表面累计失去 1.19 个电子.