Kinetics and thermodynamics of sucrose hydrolysis from real-time enthalpy and heat capacity measurements

We report a real time study of the enthalpy release and heat capacity during the course of HCl-catalyzed hydrolysis of sucrose to fructose and glucose. Measurements were performed during both isothermal conditions and during slow heating and then cooling at a controlled rate. The reaction rate constant of the first-order kinetics follows an Arrhenius relation with activation energy of 109.2 kJ/mol of sucrose. On hydrolysis, the enthalpy decreases by 14.4 kJ/mol of sucrose at 310 K, and the heat capacity, Cp, increases by 61 J mol-1 K-1 of sucrose in the solution. The enthalpy of hydrolysis decreases with increase in the temperature and DeltaCp on hydrolysis increases. The effects are attributed to change in the configurational and vibrational partition functions as one covalent bond in sucrose breaks to form two molecules, which then individually form additional hydrogen bonds and alter the water's structure in the solution. Cp of the solution increases with temperature less rapidly before sucrose hydrolysis than after it. This may reflect an increase in the configurational contribution to Cp as the hydrogen bond population changes.     

Computational evidence for methyl-donated hydrogen bonds and hydrogen-bond networking in 1,2-ethanediol-dimethyl sulfoxide

The 1:1 complex of 1,2-ethanediol with dimethyl sulfoxide was studied using density functional theory. A network of three hydrogen bonds holds the complex together, including two in which each methyl group donates to the same hydroxyl oxygen. Four lines of evidence support the existence of methyl-donated hydrogen bonds. The interaction energy is 36 +/- 5 kJ/mol using Becke's three parameter hybrid theory with the 1991 nonlocal correlation functional of Perdew and Wang, and a moderately large basis set (B3PW91/6-311++G**//B3PW91/6-31+G**). To determine the energy of each hydrogen bond, a relaxed potential energy scan was performed in a smaller basis set to break the weaker hydrogen bonds by forced systematic rotation of the methyl groups. Two cross-checking analyses show cooperative effects that cause individual hydrogen bond energies in the network to be nonadditive. When one methyl hydrogen bond is broken, the remaining interactions stabilize the complex by storing an additional 2-3 kJ/mol. With all hydrogen bonds intact, the O[bond]H...O[bond]S hydrogen bond contributes 26 +/- 2 kJ/mol stability, and each weak methyl bond stores 5 +/- 2 kJ/mol.     

Molecular mechanics study on conformation of perylene-quinonoid photosensitizers

Using molecular mechanics method,values of the heat of formation (HF) of different conformations,of perylenequinonoid photosensitizes hypocrellin A (HA) and hypocrellin B (HB) were calculated and the variance of HF after phenolic protons' dissociation were calculated as well The following was found:(i) The HF values of lour conformational isomers of HA and HB are similar to each other,so the four isomcrs can transform to each other room temperature,(ii) There exists the difference between the ability of dissociation of phenolic protons of HA and that of HB,the former is higher than the latter (iii) There exist two intramolecular hydrogen bonds in HA and HB The bond energy is approximately 8 kJ/mol and the energy of conformation Ⅰ is lower than that of conformationⅡ The bond energy of HA is lower than that of HB.(iv) There exists a low energy snot when phenolic hydroxyl bond twists 180° from the position where hydrogen bond is formed,which suggests that this kind of conformation probably exists,(v) Th     

多氯咔唑系列化合物的热力学性质的密度泛函理论研究

采用Gaussian 03程序中的密度泛函(DFT)方法, 在B3LYP/6-31G*水平上对135个多氯咔唑系列化合物(PCCZs)进行了全优化计算, 得到了298.15 K, 1.013×105 Pa标准状态下各分子的热力学性质. 设计等键反应, 计算了PCCZs系列化合物的标准生成热(ΔfHÖ)和标准生成自由能(ΔfGÖ), 研究了这些参数与氯原子的取代位置及取代数目(NPCS)之间的关系, 结果表明: 熵(SÖ), ΔfHÖ, ΔfGÖ与NPCS之间有很强的相关性. 并根据ΔfGÖ的相对大小, 从理论上求得异构体的相对稳定性的顺序. 此外, 以Gaussian 03程序的输出文件为基础, 采用统计热力学程序计算了PCCZs化合物在200至1800 K的摩尔恒压热容(Cp,m), 并用最小二乘法求得Cp,m与温度之间的相关方程, 发现Cp,m与T, T－1和T－2之间有着很好的相关性.     

Studies of Thermodynamic Properties and Relative Stability of Polybrominated Xanthones by Density Functional Theory

The thermodynamic properties of xanthone(XTH) and 135 polybrominated xanthones(PBXTHs) in the standard state have been calculated at the B3LYP/6-31G* level using Gaussian 03 program.The isodesmic reactions were designed to calculate the standard enthalpy of formation(△fHθ) and standard free energy of formation(△fGθ) of PBXTH congeners.The relations of these thermodynamic parameters with the number and position of Br atom substitution(NPBS) were discussed,and it was found that there exist high correlation between thermodynamic parameters(entropy(Sθ),△fHθ and △fGθ) and NPBS.According to the relative magnitude of their △fGθ,the relative stability order of PBXTH congeners was theoretically proposed.The relative rate constants of formation reactions of PBXTH congeners were calculated,Moreover,the values of molar heat capacity at constant pressure(Cp,m) from 200 to 1000 K for PBXTH congeners were also calculated,and the temperature dependence relation of them was obtained,suggesting very good relationships between Cp,m and temperature(T,T-1 and T-2) for almost all PBXTH congeners.     

多氯代吩噁嗪热力学性质的密度泛函理论研究

在B3LYP/6-31G*水平上对135个多氯代吩噁嗪(PCPXs)系列化合物进行了全优化和振动分析计算, 得到各分子在298.15 K, 1.013×105 Pa标准状态下的热力学性质. 设计等键反应, 计算了PCPXs系列化合物的标准生成热(Δf )和标准生成自由能(Δf ), 研究了这些参数与氯原子的取代位置及取代数目(NPCS)之间的关系, 结果表明: 熵( )、Δf , Δf 与NPCS之间有很强的相关性. 根据异构体标准生成自由能的相对大小, 从理论上求得异构体的相对稳定性. 以Gaussian 03程序的输出文件为基础, 采用统计热力学程序计算了PCPXs化合物在200 K至1800 K的摩尔恒压热容(Cp,m), 并用最小二乘法求得Cp,m与温度之间的相关方程, 发现Cp,m与T, T－1和T－2之间有着很好的相关性.     

NTO二聚体分子间相互作用的理论研究

在DFT-B3LYP/6-311＋＋G**水平上求得NTO二聚体势能面上六种优化构型和电子结构. 经基组叠加误差(BSSE)和零点能(ZPE)校正, 求得分子间最大相互作用能为－53.66 kJ/mol. 二子体系间的电荷转移很少. 由自然键轨道分析揭示了相互作用的本质. 对优化构型进行振动分析, 并基于统计热力学求得200.0～800.0 K温度范围从单体形成二聚体的热力学性质变化. 发现二聚主要由强氢键所贡献, 但结合能大小并不为氢键所完全决定. 二聚过程在较低温度或常温下能自发进行.     

Thermodynamics of binding of D-galactose and deoxy derivatives thereof to the L-arabinose-binding protein

We report the thermodynamics of binding of d-galactose and deoxy derivatives thereof to the arabinose binding protein (ABP). The "intrinsic" (solute-solute) free energy of binding DeltaG degrees (int) at 308 K for the 1-, 2-, 3-, and 6-hydroxyl groups of galactose is remarkably constant (approximately -30 kJ/mol), despite the fact that each hydroxyl group subtends different numbers of hydrogen bonds in the complex. The substantially unfavorable enthalpy of binding (approximately 30 kJ/mol) of 1-deoxygalactose, 2-deoxygalactose, and 3-deoxygalactose in comparison with galactose, cannot be readily accounted for by differences in solvation, suggesting that solute-solute hydrogen bonds are enthalpically significantly more favorable than solute-solvent hydrogen bonds. In contrast, the substantially higher affinity for 2-deoxygalactose in comparison with either 1-deoxygalactose or 3-deoxygalactose derives from differences in the solvation free energies of the free ligands.     

Thermodynamics of hydrogen atom transfer to a high-valent iron imido complex

Thermodynamic investigations relevant to hydrogen atom transfer by the high-valent iron imido complex [LMesFe[triple bond]NAd]OTf have been undertaken. The complex is found to be weakly oxidizing by cyclic voltammetry (E1/2 = -0.98 V vs Cp2Fe+/Cp2Fe in MeCN). A combination of experimental and computational studies has been used to determine the acidity of LMesFe-N(H)Ad+ (pKa = 37 in MeCN), allowing the N-H BDFE (88(5) kcal/mol) to be calculated from a thermodynamic cycle. Consistent with this value, [LMesFe[triple bond]NAd]OTf reacts with 9,10-dihydroanthracene (C-H BDE = 78(1) kcal/mol) to form anthracene.     

Conformers and intramolecular hydrogen bonding of the oxalic acid monomer and its anions

Density functional theory, B3LYP/6‐31G** and B3LYP/6‐311+G(2d,p), and ab initio MP2/6‐31G** calculations have been carried out to investigate the conformers, transition states, and energy barriers of the conformational processes of oxalic acid and its anions. QCISD/6‐31G** geometrical optimization is also performed in the stable forms. Its calculated energy differences between the two most stable conformers are very near to the related observed value at 7.0 kJ/mol. It is found that the structures and relative energies of oxalic acid conformers predicted by these methods show similar results, and that the conformer L1 (C_2h) with the double‐interfunctional‐groups hydrogen bonds is the most stable conformer. The magnitude of hydrogen bond energies depends on the energy differences of various optimized structures. The hydrogen bond energies will be about 32 kJ/mol for interfunctional groups, 17 kJ/mol for weak interfunctional groups, 24 kJ/mol for intra‐COOH in (COOH)₂, and 60 kJ/mol for interfunctional groups in (COOH)COO⁻¹ ion if calculated using the B3LYP/6‐311+G(2d,p) method. © 2000 John Wiley & Sons, Inc. Int J Quant Chem 76: 541–551, 2000     

The development of a simple empirical scoring function to estimate the binding constant for a protein-ligand complex of known three-dimensional structure

Summary A new simple empirical function has been developed that estimates the free energy of binding for a given protein-ligand complex of known 3D structure. The function takes into account hydrogen bonds, ionic interactions, the lipophilic protein-ligand contact surface and the number of rotatable bonds in the ligand. The dataset for the calibration of the function consists of 45 protein-ligand complexes. The new energy function reproduces the binding constants (ranging from 2.5·10^-2 to 4·10^-14 M, corresponding to binding energies between -9 and -76 kJ/mol) of the dataset with a standard deviation of 7.9 kJ/mol, corresponding to 1.4 orders of magnitude in binding affinity. The individual contributions to protein-ligand binding obtained from the scoring function are: ideal neutral hydrogen bond: -4.7 kJ/mol; ideal ionic interaction: -8.3 kJ/mol; lipophilic contact: -0.17 kJ/mol Ų; one rotatable bond in the ligand: +1.4 kJ/mol. The function also contains a constant contribution (+5.4 kJ/mol) which may be rationalized as loss of translational and rotational entropy. The function can be evaluated very fast and is therefore also suitable for application in a 3D database search or de novo ligand design program such as LUDI.     

Density Functional Calculations on a Double Hydrogen-bonded Dimer

Density functional theory (DFT) calculations on a double hydrogen-bonded dimer of o-hydroxybenzoic acid were carried out at the B3LYP/6-31G^* level. The optimized geometry of the dimer closely resembles that of the crystal. The calculated results show that the total energy of the dimer is much lower than the sum energies of the two monomers, and the average strength of the double hydrogen bonds is about 38.37 kJ/mol. In order to probe the origin of the interactions in the dimer, natural bond orbital analyses were performed. The thermodynamic properties of the title compound at different temperatures have also been calculated on the basis of vibrational analyses and ΔGT, the change of Gibbs free energy for the aggregation from monomer to the dimmer, is 26.47 kJ/mol at 298.15 K and 0.1MPa, implying the spontaneous process of forming the dimer. The correlation graphics of Sm^0 Hm^0 and temperatures is depicted.     

1H-ANTA二聚体分子间相互作用的密度泛函理论研究

在DFT-B3LYP/6-311＋＋G**水平上求得1H-3-硝基-5-氨基-1,2,4-三唑(1H-ANTA)二聚体势能面上5种优化构型和电子结构. 经基组叠加误差(BSSE)和零点能(ZPE)校正, 求得分子间最大结合能为70.63 kJ/mol. 二聚体的形成使电荷向三唑环转移. 由氢键强弱推断二聚体稳定性的顺序与结合能顺序相一致, 氢键是二聚体的主要作用形式. 对优化构型进行振动分析, 并基于统计热力学求得200.0～800.0 K温度范围内单体形成二聚体的热力学性质变化. 发现在该温度范围所有二聚过程均能自发进行.     

Thermodynamic functions of liquid water calculated from the temperature evolution of the vibration spectrum contour

Configurational contributions of hydrogen bonds to thermodynamic properties of water (internal energy, entropy, and heat capacity) are calculated on the basis of statistical distributions of frequencies of the OH vibrations of liquid water, calculated earlier from the experimental Raman spectra in frameworks of the fluctuation theory of hydrogen bonding. Distributions of the energy of hydrogen bonds are determined. It is shown by comparison with computer experiments that previously established dependence of energy on frequency, E(nu), must be considered in this formalism as the effective energy of hydrogen bonding averaged over those configurations of hydrogen bridge O-H...O which lead to the given frequency nu in the vibrational spectrum. Contribution of van der Waals interactions not affecting the frequency shift to heat capacity is evaluated.     

Cooperative effect in hydrogen bonding of N-methylacetamide in carbon tetrachloride solution confirmed by NMR and IR spectroscopies

Recently we carried out ab initio molecular orbital calculations of the hydrogen bond energies in the dimers and trimers of N-methylacetamide (NMA), and found the existence of a cooperative effect in the hydrogen bonding, by which formation of one hydrogen bond in a hydrogen-bonded chain enhances the strength of another hydrogen bond. In order to confirm the existence of such a cooperative effect, we have determined experimentally the enthalpy changes occurring upon hydrogen bonding of NMA in CCl4 solution. First, following the method proposed by us, the population fractions of free (non-bonded) NH protons are obtained from the observed amide proton NMR chemical shifts and the IR intensities of the free NH stretching bands. Next, the enthalpy changes are evaluated by analyzing the equilibrium between the free and bonded states of an NH proton. In this analysis, the existence of the CCl4 solvent is taken into account. The stabilization energy of hydrogen bonds in a trimer, as compared with twice the hydrogen bond energy in a dimer, is 5.4 kJ mol(-1), in good agreement with the calculated value (5.9 kJ mol(-1)). This result provides experimental confirmation of the existence of a cooperative effect in hydrogen bonding.     

Scattering, accommodation, and trapping of HCl in collisions with a hydroxylated self-assembled monolayer

Time-of-flight molecular beam scattering techniques are used to explore the energy exchange, thermal accommodation, and residence time of HCl in collisions with an OH-terminated self-assembled monolayer. The monolayer, consisting of 16-mercapto-1-hexadecanol (HS(CH(2))(16)OH) self-assembled on gold, provides a well-characterized surface containing hydroxyl groups located at the gas-solid interface. Upon colliding with the hydroxylated surface, the gas-phase HCl is found to follow one of three pathways: direct impulsive scattering, thermal accommodation followed by prompt desorption, and temporary trapping through HO--- HCl hydrogen bond formation. For an incident energy of 85 kJ/mol, the HCl transfers the majority, >80%, of its translational energy to the surface. The extensive energy exchange facilitates thermalization, leading to very large accommodation probabilities on the surface. Under the experimental conditions used in this work, over 75% of the HCl approaches thermal equilibrium with the surface before desorption and, for a 6 kJ/mol HCl beam, nearly 100% of the molecules that recoil from the surface can be described by a thermal distribution at the temperature of the surface. For the molecules that reach thermal equilibrium with the surface prior to desorption, a significant fraction appear to form hydrogen bonds with surface hydroxyl groups. The adsorption energy, determined by measuring the HCl residence time as a function of surface temperature, is 24 +/- 2 kJ/mol.     

Calorimetric and computational study of thiacyclohexane 1-oxide and thiacyclohexane 1,1-dioxide (thiane sulfoxide and thiane sulfone). Enthalpies of formation and the energy of the S=O bond

A rotating-bomb combustion calorimeter specifically designed for the study of sulfur-containing compounds [J. Chem. Thermodyn. 1999, 31, 635] has been used for the determination of the enthalpy of formation of thiane sulfone, 4, Delta(f)H(o) m(g) = -394.8 +/- 1.5 kJ x mol(-1). This value stands in stark contrast with the enthalpy of formation reported for thiane itself, Delta(f)H(o) m(g) = -63.5 +/- 1.0 kJ x mol(-1), and gives evidence of the increased electronegativity of the sulfur atom in the sulfonyl group, which leads to significantly stronger C-SO2 bonds. Given the known enthalpy of formation of atomic oxygen in the gas phase, Delta(f)H(o) m(O,g) = +249.18 kJ x mol(-1), and the reported bond dissociation energy for the S=O bond in alkyl sulfones, BDE(S=O) = +470.0 kJ x mol(-1), it was possible to estimate the enthalpy of formation of thiane sulfoxide, 5, a hygroscopic compound not easy to use in experimental calorimetric measurements, Delta(f)H(o) m(5) = -174.0 kJ x mol(-1). The experimental enthalpy of formation of both 4 and 5 were closely reproduced by theoretical calculations at the G2(MP2)+ level, Delta(f)H(o) m(4) = -395.0 kJ x mol(-1) and Delta(f)H(o) m(5) = -178.0 kJ x mol(-1). Finally, calculated G2(MP2)+ values for the bond dissociation energy of the S=O bond in cyclic sulfoxide 5 and sulfone 4 are +363.7 and +466.2 kJ x mol(-1), respectively.     

重铬酸钾晶体低温热容及热力学性质的研究

用精密自动绝热量热计测定了重铬酸钾晶体在100～390 K温区内的摩尔热容.实验结果表明在研究温度区间内重铬酸钾无相变和其它热反常现象发生,但其热容在不同的温度范围表现出不同的变化趋势.在100 K≤ T ≤ 275 K和350 K≤ T ≤390 K区间内,其热容随温度的升高明显增大,在275 K≤ T ≤350 K区间,其热容约为定值.将重铬酸钾摩尔热容实验值Cp,m(J•K－1•mol－1)拟合成温度T的多项式方程,在100 K≤ T ≤275 K,为Cp,m=0.0050T2－1.0320T＋125.22； 275 K≤ T ≤ 350 K,为Cp,m=209.37； 350 K≤ T ≤390 K,为Cp,m= 0.0266T2－18.823T＋3542.3.根据热力学函数关系式,从热容值计算出了298.15 K～ 400 K温区范围内每隔5 K的热力学函数值.     

Carbon-to-metal hydrogen atom transfer: direct observation using time-resolved infrared spectroscopy

We report the direct spectroscopic observation of hydrogen atom transfer reactions from carbon to metals, in which homolytic cleavage of a C-H bond is accomplished at a single metal center. Laser flash photolysis (355 nm) of a solution of [Cp(CO)2Os]2 leads to homolysis of the Os-Os bond and formation of the osmium-centered radical, Cp(CO)2Os*, as observed by time-resolved infrared (TRIR) spectroscopy. DFT computations on Cp(CO)2Os* support this assignment. Continuous photolysis (lambda > 300 nm) of [Cp(CO)2Os]2 in the presence of excess 1,4-cyclohexadiene produces the osmium hydride Cp(CO)2OsH. The kinetics of this carbon-to-metal hydrogen atom transfer were examined by TRIR spectroscopy. The second-order rate constant for hydrogen atom transfer from 1,4-cyclohexadiene to Cp(CO)2Os* in hexane at 23 degrees C is kH = (2.1 +/- 0.2) x 106 M-1 s-1. The pKa of Cp(CO)2OsH was determined as 32.7 in CH3CN, and use of a thermochemical cycle provided an estimated lower limit of 82 kcal/mol for the Os-H bond dissociation energy, indicating that it is an exceptionally strong M-H bond. Photolysis of [Tp(CO)2Os]2 (Tp = hydridotris(pyrazolyl)borate) results in carbon-to-metal hydrogen atom transfers from even stronger C-H bonds (THF or toluene) and produces Tp(CO)2OsH.     

金属丝桃蒽酮结构变化的理论研究

用MMX和AM1方法对金属桃蒽酮(HYP)结构变化过程的生成热进行了计算.发现:1.HYP1,2位OH可越过20kJ/mol左右的势,绕C--O键旋转而形成分子内氢键,并估算出键能约为10kJ/mol;2.HYP其他四个OH也可进行类似的构象变化,势垒在26kJ/mol左右,相应分子内氢键键能约为20kJmol;3.HYP分子内氢传递产生的异构体在能量上不稳定,进而在基础上探讨了1,2位OH分子内氢键的形成对HYP光敏活性的影响。