Adsorption of DNA onto gold nanoparticles and graphene oxide: surface science and applications

The interaction between DNA and inorganic surfaces has attracted intense research interest, as a detailed understanding of adsorption and desorption is required for DNA microarray optimization, biosensor development, and nanoparticle functionalization. One of the most commonly studied surfaces is gold due to its unique optical and electric properties. Through various surface science tools, it was found that thiolated DNA can interact with gold not only via the thiol group but also through the DNA bases. Most of the previous work has been performed with planar gold surfaces. However, knowledge gained from planar gold may not be directly applicable to gold nanoparticles (AuNPs) for several reasons. First, DNA adsorption affinity is a function of AuNP size. Second, DNA may interact with AuNPs differently due to the high curvature. Finally, the colloidal stability of AuNPs confines salt concentration, whereas there is no such limit for planar gold. In addition to gold, graphene oxide (GO) has emerged as a new material for interfacing with DNA. GO and AuNPs share many similar properties for DNA adsorption; both have negatively charged surfaces but can still strongly adsorb DNA, and both are excellent fluorescence quenchers. Similar analytical and biomedical applications have been demonstrated with these two surfaces. The nature of the attractive force however, is different for each of these. DNA adsorption on AuNPs occurs via specific chemical interactions but adsorption on GO occurs via aromatic stacking and hydrophobic interactions. Herein, we summarize the recent developments in studying non-thiolated DNA adsorption and desorption as a function of salt, pH, temperature and DNA secondary structures. Potential future directions and applications are also discussed.     

Influence of mesoporosity on the sorption of 2,4-dichlorophenoxyacetic acid onto alumina and silica

Two SiO2 and three Al2O3 adsorbents with varying degrees of mesoporosity (pore diameter 2-50 nm) were reacted with 2,4-dichlorophenoxyacetic acid (2,4-D) at pH 6 to investigate the effects of intraparticle mesopores on adsorption/desorption. Anionic 2,4-D did not adsorb onto either SiO2 solid, presumably because of electrostatic repulsion, but it did adsorb onto positively charged Al2O3 adsorbents, resulting in concave isotherms. The Al2O3 adsorbent of highest mesoporosity consistently adsorbed more 2,4-D per unit surface area than did the nonporous and less mesoporous Al2O3 adsorbents over a range of initial 2,4-D solution concentrations (0.025-2.5 mM) and reaction times (30 min-55 d). Differences in adsorption efficiency were observed despite equivalent surface site densities on the three Al2O3 adsorbents. Hysteresis between the adsorption/desorption isotherms was not observed, indicating that adsorption is reversible. Attenuated total reflectance-Fourier transform infrared (ATR-FTIR) spectroscopy studies confirm that 2,4-D adsorption does not occur via ligand exchange, but rather via electrostatic interaction. The results indicate that adsorbent intraparticle mesopores can result in consistently greater 2,4-D adsorption, but the amount adsorbed is dependent upon surface charge and the presence of adsorbent mesoporosity. The data also suggest that when mineral pores are significantly larger than the adsorbate, they do not contribute to diffusion-limited adsorption/desorption hysteresis. Adsorbent transformations through time are discussed.     

Experimental Approaches to Adsorption-Desorption Dynamism of Human Serum Albumin (HSA) onto Crosslinked N,N′-Diethylaminoethyl (DEAE) Dextran Microbeads

Crosslinked N,N′-Diethylaminoethyl (DEAE) groups containing dextran microbeads have been used in human serum albumin (HSA) adsorption-desorption studies. For the HSA adsorption onto positively charged hydrophilic DEAE dextran microbeads, the adsorption kinetic was slightly decreased by the changing concentration of the protein solution. Adsorption kinetics and equilibrium isotherms for the adsorption of HSA on crosslinked DEAE dextran have been determined experimentally. Modeling of the adsorption processes on DEAE dextran microbeads were realized by applying different adsorption isotherms. Among the several isotherm equations, Langmuir and Freundlich adsorption isotherms were investigated depending on the two temperatures. These were only slightly dependent on the initial concentration of HSA but were considerably affected by the pH of the medium. The HSA adsorption capacity factor and the adsorption equilibrium constant were obtained and mathematical modeling of adsorption, adsorption rate constants and maximum adsorption were determined. Besides the adsorption mechanism, optimum ionic strength and optimum pH also were investigated. Desorption studies and desorption ratio of the system were determined for optimum medium conditions. It was been proved both experimentally and theoretically that human HSA is adsorbed by electrostatic attraction, ion-exchange, hydrophobic interaction and/or hydrogen bonding.     

A new concept for coal water mixture stabilization using a polyelectrolyte

The stabilization mechanism of Sodium Polystyrene Sulphonate (PSSNa) on coal water mixture (CWM) has been examined using the following colloid chemical concept. It is realized that the stabilization of the CWM is due to an increase in electrostatic repulsion between the coal particles and the electrostatic repulsion is influenced strongly by the concentration of metal cations, especially Ca²⁺ eluted from the coal surface. The adsorption isotherm of PSSNa on the coal surface indicates a weak affinity type and the desorption amount of PSSNa is tremendously small in compared with the amount of adsorption. This indicates that a lot of PSSNa adsorbed weakly has been eliminated from the surface in the pre-washing process of desorption experiment. Furthermore, it appears that the -potential determined by the Acoustosizer for concentrated coal suspension shows higher values than the values determined by the usual electrophoresis, and that the high values hold for a wide range of salt concentrations in the medium. All these results indicate that much PSSNa is adsorbed weakly on the coal surface and the component plays a role in the stability character of CWM, where a large contribution of depletion stabilization effect can be expected.     

DNA adsorbed on graphene and graphene oxide: Fundamental interactions,desorption and applications

Interfacing DNA oligonucleotides with graphene-based materials, especially graphene oxide, has produced many new sensors and devices. Since graphene oxide is an excellent fluorescence quencher, fluorescently labeled DNAs (probes) are nearly fully quenched upon adsorption. Addition of the complementary DNA results in probe desorption and fluorescence enhancement. Aside from its analytical applications, this system provides a fascinating topic for biointerface science. DNA can be adsorbed by graphene oxide via π–π stacking and hydrogen bonding, while it must overcome electrostatic repulsion at the same time. The mechanism of DNA-induced probe desorption has also been a topic of extensive discussion. In this article, DNA adsorption and desorption reactions and interactions with graphene oxide and related materials (e.g. graphene) are reviewed based on the current understandings. A few representative applications based on these processes are also described briefly.     

Elaboration of poly(ethyleneimine) coated poly( , -lactic acid) particles. Effect of ionic strength on the surface properties and DNA binding capabilities

Poly( , -lactic acid) (PLA)-based particles, obtained by the emulsification–diffusion process, were surface-modified by electrostatic adsorption of poly(ethylenimine) (PEI). The amount of immobilized PEI and the conformation of the polycation at the interface were dependent on the ionic strength of the media. In the absence of salt, or at low ionic strength, the adsorbed amounts of PEI, the surface charge and the critical concentration for coagulation (CCC) of the modified particles were lower than when the adsorption was achieved at elevated ionic strength. Moreover, at low salt concentration, isotherms were of Langmuir type, suggesting the formation of monolayers. The differences in PEI surface conformation had consequences on the DNA binding capacity of the particles, on the plasmid DNA conformation at the interface and on the DNA release in various media. When PEI was adsorbed in a 50 mM phosphate buffer, the amount of bound plasmid and the strength of binding were higher than when PEI was adsorbed in water. From these differences in physico-chemical properties, one can expect differences in transfection or immunization performances of the vectors.     

Structural thermodynamics of lamellar cationic lipid-DNA complex: DNA compressibility modulus

We have studied theoretically the compressibility modulus B of DNA and complexation adsorption isotherms of DNA and lipids, as a function of DNA spacing d(DNA) and NaCl electrolyte concentration, respectively, in isoelectric states of lamellar DNA/cationic lipid (CL) self-assemblies. The electrostatic free energy derived from the Poisson-Boltzmann theory predicts partial agreement with measured B values for interhelical separations d(DNA)>33 A when use is made of a fit of hydration repulsion from bulk DNA hexagonal phases in solution. For lower interchain separations the prediction worsens due to the hydration interaction that overcomes the electrostatic contribution. An exact match of the system's counterion electrochemical potentials and the coions of salt in aqueous phase leads to the electrostatic part of the free energy that renders isotherms of d(DNA) versus ionic strength in qualitative consistency with general trends of available experimental data of CL-DNA complexes.     

Adsorption of microcystin-Lr onto iron oxide nanoparticles

In this study, the adsorption of microcystin-LR onto iron oxide (maghemite) nanoparticles from water was examined. Factors influencing the sorption behavior included microcystin and maghemite concentration, pH, ionic strength, and the presence of natural organic matter. Adsorption of microcystin-LR was strongly affected by pH. The adsorption increased with decreasing pH, with a maximum adsorption around pH 3. Adsorption of microcystin-LR on maghemite was primarily attributed to electrostatic interactions, although hydrophobic interactions may also play a role. The extent of microcystin-LR adsorption onto maghemite increased with increasing ionic strength at pH 6.4, since salt ions screened the electrostatic repulsion between adsorbed microcystin molecules. Adsorption of microcystin-LR was not significantly affected by the presence of Suwannee River Fulvic acid (SRFA) below 2.5 mg/L. However, adsorption decreased at higher SRFA concentrations (2.5–25 mg/L) due to competitive adsorption between SRFA and microcystin-LR for limited sorption sites.     

Flocculation and stabilization of colloidal silica by the adsorption of poly-diallyl-dimethyl-ammoniumchloride (PDADMAC) and of copolymers of DADMAC with N-methyl-N-vinyl- acetamide (NMVA)

 The stabilization and flocculation behavior of colloidal silica-particles with cationic polyelectrolytes (PE) is investigated. The zetapotentials, diffusion coefficients and flocculation rate constants of silica particles have been measured as a function of the adsorbed amount of cationic polyelectrolytes poly(diallyl-dimethyl-ammoniumchloride) (PDADMAC) of different molar masses and of statistic copolymers of DADMAC and N-methyl-N-vinyl-acetamide (NMVA) of various compositions at different salt concentrations and pH-values. Very fast flocculation due to van der Waals attraction occurs if the zetapotential is small. At low ionic strength this condition occurs just below the plateau of the adsorption isotherms where the surface charges are screened by adsorbed polycations. Additionally with high molecular polycations slow mosaic flocculation is observed at lower PE concentrations. At high ionic strength fast flocculation takes place at low macroion concentration due to the screening of the surface charges by adsorbed polycations and salt ions. At medium concentrations of polycations below plateau adorption slow bridging flocculation is observed. At plateau adsorption the suspensions become stabilized up to high ionic strength. At low salt concentration charge reversal at full coverage with polycations results in electrostatic repulsion. At high ionic strength the particles are stabilized sterically due to the osmotic repulsion of the long adsorbed PE tails. Therefore macroions of high molar mass are necessary to stabilize the suspension at high ionic strength. Received: 27 January 1998 Accepted: 23 March 1988     

pH and ionic strength effect on single fibrinogen molecule adsorption on mica studied with AFM

Although several investigations have been reported on the effect of pH or ionic strength on protein adsorption, most of them have been carried out with protein monolayers and not with single molecules. We have used atomic force microscopy to image, in phosphate buffer, single fibrinogen molecules adsorbed on mica and compare the surface coverage at variable pH (7.4, 5.8, 3.5) or ionic strength (15, 150, 500 mM) conditions. The images obtained and the statistical analysis of the surface coverage indicate adsorption enhancement at the IEP of fibrinogen (pH 5.8) and minimum adsorption at pH 3.5. On the other hand, more protein was adsorbed when the salt concentration of the buffer at pH 7.4 was increased from 15 to 150 mM. However, further increase of salt concentration up to 500 mM resulted in decreased adsorption. To confirm the aforementioned results an approaching bare Si(3)N(4) tip was used as an electrostatic analogue to a protein molecule and interaction force curves between it and the substrate were recorded. The results were in consistence with the double layer theory which justifies the screening of electrostatic repulsion as the salt concentration increases.     

Dispersion stability of a ceramic glaze achieved through ionic surfactant adsorption

The adsorption of cetylpyridinium chloride (CPC) and sodium dodecylbenzenesulfonate (SDBS) onto a ceramic glaze mixture composed of limestone, feldspar, quartz, and kaolin has been investigated. Both adsorption isotherms and the average particle zeta potential have been studied in order to understand the suspension stability as a function of pH, ionic strength, and surfactant concentration. The adsorption of small amounts of cationic CPC onto the primarily negatively charged surfaces of the particles at pH 7 and 9 results in strong attraction and flocculation due to hydrophobic interactions. At higher surfactant concentrations a zeta potential of more than +60 mV results from the bilayered adsorbed surfactant, providing stability at salt concentrations < or = 0.01 M. At 0.1 M salt poor stability results despite substantial zeta potential values. Three mechanisms for SDBS adsorption have been identified. When anionic SDBS monomers either adsorb by electrostatic interactions with the few positive surface sites at high pH or adsorb onto like charged negative surface sites due to dispersion or hydrophobic interactions, the magnitude of the negative zeta potential increases slightly. At pH 9 this increase is enough to promote stability with an average zeta potential of more than -55 mV, whereas at pH 7 the zeta potential is lower at about -45 mV. The stability of suspensions at pH 7 is additionally due to steric repulsion caused by the adsorption of thick layers of neutrally charged Ca(DBS)2 complexes created when the surfactant interacts with dissolved calcium ions from the calcium carbonate component.     

Dynamic Behaviors and Morphology Change of Anionic Phospholipid DPPG Monolayer Caused by Bovine Serum Albumin at Air-Water Interface

The interaction between bovine serum albumin (BSA) and the anionic 1.2-dipalmitoyl-snglycero- 3-(phospho-rac-(1-glycerol)) (sodium salt) (DPPG) phospholipid at different subphase pH values was investigated at air-water interface through surface pressure measurements and atomic force microscopy (AFM) observation. By analyzing surface pressure-mean molecular area (π-A) isotherms, the limiting molecular area in the closed packing state-the concentration of BSA (A_lim-[BSA]) curves, the compressibility coefficient-surface pressure (C_S^-1-π) curves and the difference value of mean molecular area-the concentration of BSA (ΔA-[BSA]) curves, we obtained that the mean molecular area of DPPG monolayer became much larger when the concentration of BSA in the subphase increased at pH=3 and 5. But the isotherms had no significant change at different amount of BSA at pH=10. In addition, the amount of BSA molecules adsorbed onto the lipid monolayer reached a threshold value when [BSA]>5×10^-8 mol/L for all pHs. From the surface pressure-time (π-t) data, we obtained that desorption and adsorption processes occurred at pH=3, however, there was only desorption process occurring at pH=5 and 10. These results showed that the interaction mechanism between DPPG and BSA molecules was affected by the pH of subphase. BSA molecules were adsorbed onto the DPPG monolayers mainly through the hydrophobic interaction at pH=3 and 5, and the strength of hydrophobic interaction at pH=3 was stronger than the case of pH=5. At pH=10, a weaker hydrophobic interaction and a stronger electrostatic repulsion existed between DPPG and BSA molecules. AFM images revealed that the pH of subphase and [BSA] could affect the morphology features of the monolayers, which was consistent with these curves. The study provides an important experimental basis and theoretical support to understand the interaction between lipid and BSA at the air-water interface.     

Adsorption of humic acid on goethite: isotherms, charge adjustments, and potential profiles

The adsorption of natural organic matter (NOM) on mineral (hydr)oxide plays an important role in the evaluation of the speciation of toxic metal ions in the environment. Because both NOM and mineral oxide have variable charges that adjust upon adsorption, a good understanding of proton binding is required before the binding of metal ions can be understood. In this study, the adsorption of purified Aldrich humic acid (PAHA) on goethite was examined as a function of the environmental conditions (pH, salt concentration, and free concentration of PAHA) together with the proton adsorption to PAHA, goethite, and their mixtures. The induced charges on both components were separated on the basis of the difference between the charge/pH curves of the mixture and those of the single components. The electrostatic potential profile across the adsorbed layer was obtained as a numerical solution of the Poisson-Boltzmann equation using the charge density of the adsorbed PAHA and the goethite surface. From the quantitative evaluation of the induced charge on both components, it is revealed that the degree of the charge adjustment is related to the electrostatic affinity between the PAHA segments and the goethite surface, the electrostatic repulsion between the PAHA segments, and the electrostatic shielding by salt ions. Considering the charge distribution of the adsorbed PAHA at the goethite surface, it is concluded that the change of the charge adjustment is sensitive to that of the conformation of the adsorbed PAHA. From the detailed inspection of the assumptions made and the comparison with the reported theoretical calculations, the obtained potential profiles are considered to broadly reflect the true potential profiles. Because a charge adjustment is not frequently considered in detail in relation to the NOM adsorption on metal (hydr)oxides, the obtained results can form the basis for the further development of modeling of the adsorption of NOM on (hydr)oxide surfaces.     

Anionic polyelectrolyte adsorption on mica mediated by multivalent cations: a solution to DNA imaging by atomic force microscopy under high ionic strengths

Adsorption of DNA molecules on mica, a highly negatively charged surface, mediated by divalent or trivalent cations is considered. By analyzing atomic force microscope (AFM) images of DNA molecules adsorbed on mica, phase diagrams of DNA molecules interacting with a mica surface are established in terms of concentrations of monovalent salt (NaCl) and divalent (MgCl2) or multivalent (spermidine, cobalt hexamine) salts. These diagrams show two transitions between nonadsorption and adsorption. The first one arises when the concentration of multivalent counterions is larger than a limit value, which is not sensitive to the monovalent salt concentration. The second transition is due to the binding competition between monovalent and multivalent counterions. In addition, we develop a model of polyelectrolyte adsorption on like-charged surfaces with multivalent counterions. This model shows that the correlations of the multivalent counterions at the interface between DNA and mica play a critical role. Furthermore, it appears that DNA adsorption takes place when the energy gain in counterion correlations overcomes an energy barrier. This barrier is induced by the entropy loss in confining DNA in a thin adsorbed layer, the entropy loss in the interpenetration of the clouds of mica and DNA counterions, and the electrostatic repulsion between DNA and mica. The analysis of the experimental results provides an estimation of this energy barrier. We then discuss some important issues, including DNA adsorption under physiological conditions.     

Instantaneous and quantitative functionalization of gold nanoparticles with thiolated DNA using a pH-assisted and surfactant-free route

The attachment of thiolated DNA to gold nanoparticles (AuNPs) has enabled many landmark works in nanobiotechnology. This conjugate chemistry is typically performed using a salt-aging protocol where, in the presence of an excess amount of DNA, NaCl is gradually added to increase DNA loading over 1-2 days. To functionalize large AuNPs, surfactants need to be used, which may generate difficulties for downstream biological applications. We report herein a novel method using a pH 3.0 citrate buffer to complete the attachment process in a few minutes. More importantly, it allows for quantitative DNA adsorption, eliminating the need to quantify the number of adsorbed DNA and allowing the adsorption of multiple DNAs with different sequences at predetermined ratios. The method has been tested for various DNAs over a wide range of AuNP sizes. Our work suggests a synergistic effect between pH and salt in DNA attachment and reveals the fundamental kinetics of AuNP aggregation versus DNA adsorption, providing a novel means to modulate the interactions between DNA and AuNPs.     

Adsorption of different amphiphilic molecules onto polystyrene latices

In order to know the influence of the surface characteristics and the chain properties on the adsorption of amphiphilic molecules onto polystyrene latex, a set of experiments to study the adsorption of ionic surfactants, nonionic surfactants and an amphiphilic synthetic peptide on different latex dispersions was performed. The adsorbed amount versus the equilibrium surfactant concentration was determined. The main adsorption mechanism was the hydrophobic attraction between the nonpolar tail of the molecule and the hydrophobic regions of the latex surface. This attraction overcame the electrostatic repulsion between chains and latex surface with identical charge sign. However, the electrostatic interactions chain-surface and chain-chain also played a role. General patterns for the adsorption of ionic chains on charged latex surfaces could be established. Regarding the shape, the isotherms presented different plateaus corresponding to electrostatic effects and conformational changes. The surfactant size also affects the adsorption results: the higher the hydrophilic moiety in the surfactant molecule the lower the adsorbed amount.     

Preparation of activated carbon derived from cotton linter fibers by fused NaOH activation and its application for oxytetracycline (OTC) adsorption

The objective of this research is to produce high surface area-activated carbon derived from cotton linter fibers by fused NaOH activation and to examine the feasibility of removing oxytetracycline (OTC) from aqueous solution. The cotton linter fibers activated carbon (CLAC) was characterized by N(2) adsorption/desorption isotherms, Fourier transform infrared spectroscopy (FTIR), and scanning electron microscope (SEM). The results showed that CLAC had a predominantly microporous structure with a large surface area of 2143 m(2)/g. The adsorption system followed pseudo-second-order kinetic model, and equilibrium was achieved within 24h. The equilibrium data were described well by Langmuir isotherm. Thermodynamic study showed that the adsorption was exothermic reaction at low concentration and became endothermic nature with the concentration increasing. Competitive adsorption took place in the weakly acidic to neutral conditions. Under the strong acidity or strong alkaline condition, the adsorption of the oxytetracycline was hindered by electrostatic repulsion. The adsorption mechanism depended on the pH of the solutions as well as the pK(a) of the oxytetracycline.     

Study on the adsorption mechanism of DNA with mesoporous silica nanoparticles in aqueous solution

Among the numerous adsorption strategies for DNA adsorption into mesopores, the salt-solution-induced adsorption method has a great application potential in nucleic acids science; thus, it is important to understand the adsorption mechanism. This work demonstrates the mechanistic aspects underlying the adsorption behaviors of DNA with mesoporous silica nanoparticles (MSNs) in aqueous solution. The driving forces for the adsorption process can be categorized into three parts: the shielded electrostatic force, the dehydration effect, and the intermolecular hydrogen bonds. Compared to the adsorption behaviors of DNA with a solid silica nanosphere, we find some unique features for DNA adsorption into the mesopores, such as increasing the salt concentration or decreasing the pH value can promote DNA adsorption into the mesoporous silica. Further analysis indicates that the entrance of DNA into mesopores is probably controlled by the Debye length in solution and DNA can generate direct and indirect hydrogen bonds in the pores with different diameters. The following desorption study depicts that such types of hydrogen bonds result in different energy barriers for the desorption process. In summary, our study depicts the mechanism of DNA adsorption within mesopores in aqueous solution and sets the stage for formulating MSNs as carriers of nucleic acids.     

Adsorption behavior and activity of hexokinase

The study on the adsorption of hexokinase (HK) onto silicon wafers was carried out by means of in situ ellipsometry and atomic force microscopy in the liquid. The thickness values of the adsorbed HK layer determined by both techniques were in excellent agreement and evidenced HK monolayer formation. The adsorption of HK onto Si wafers was favored at low ionic strength, indicating that the adsorption is mainly driven by electrostatic forces, since salt screens not only the segment-segment repulsion but also the segment-surface attraction when the salt concentration increases. The enzymatic activity of free HK and of adsorbed HK was measured as a function of time. Free HK in solution lost activity upon storage. Contrarily, adsorbed HK kept its activity level even after 48 h storage at room temperature. This outstanding behavior was attributed to specific orientation of the HK active site to the solution.     

Brownian dynamics simulations of polyelectrolyte adsorption in shear flow: effects of solvent quality and charge patterning

We probe the effects of solvent quality and charge patterning on polyelectrolyte adsorption in shear flow using Brownian dynamics simulations with hydrodynamic interaction (HI). The polyelectrolyte is modeled as a freely jointed bead-rod chain, and electrostatic and non-electrostatic interactions are accounted for by using screened Coulombic and Lennard-Jones potentials, respectively. In the absence of flow, the conformation of a polyelectrolyte molecule adsorbed onto a uniformly charged surface changes from flat to globular with an increase in bead-bead attraction (hydrophobicity), consistent with prior experimental observations. In the presence of flow, migration due to bead-wall HI and, as a consequence, desorption decrease with an increase in bead-bead attraction, implying that flow-induced desorption is more difficult under poor-solvent conditions. When bead-bead non-electrostatic attraction is strong, desorption can be enhanced by increasing bead-bead electrostatic repulsion. Analogous to the effect of bead-surface electrostatic attraction, an increase in the strength of bead-surface non-electrostatic attraction reduces desorption. We also study the effect of shear flow on the adsorption of a polyelectrolyte molecule onto surfaces decorated with periodic arrays of charged patches. An increase in patch periodicity increases desorption even when the effective surface charge density is kept the same. The results of this work suggest mechanisms for controlling the desorption of polyelectrolyte molecules in shear flows.