光谱法和分子对接技术研究氟罗沙星与溶菌酶的相互作用

在模拟人体生理条件下,应用光谱法和分子对接技术对氟罗沙星(FIE)与溶菌酶(LYSO)的相互作用进行了研究。结果表明,FIE与LYSO的猝灭方式是静态猝灭,且在298和310 K温度下的猝灭常数K_a分别为4.10×104和0.74×104 L·mol-1。根据热力学参数的计算结果可知,FIE与LYSO的结合作用力主要是氢键和范德华力,结合距离(r=3.16 nm, ＜8 nm)表明从LYSO到FIE发生了非辐射能量转移。希尔系数的计算结果表明,在不同温度下的n_H＜1,LYSO和FIE的相互作用属于负协同作用。圆二色谱结果表明,LYSO和FIE的结合使LYSO的α-螺旋的含量由21.1% 减少到 8.8%。紫外光谱、三维荧光光谱、同步荧光光谱结果表明,LYSO和FIE的相互作用改变了LYSO的构象和微环境。分子对接进一步显示FIE通过氢键、极性键、疏水作用力等与LYSO活性部位的ASP-52,TRP-62,TRP-63等氨基酸残基相互作用。溶菌酶的活性实验表明,由于以上实验结果说明FIE引起了LYSO的构象改变,LYSO的活性随着FIE浓度的增大而降低,抑制了LYSO的活性。该研究结果为阐明FIE在机体内与LYSO的结合机理提供了可靠的实验数据和结果,为FIE对溶菌酶的的毒性评价和毒理学研究提供了理论依据。     

光谱法和分子对接技术研究氟罗沙星与溶菌酶的相互作用（英文）

在模拟人体生理条件下,应用光谱法和分子对接技术对氟罗沙星(FIE)与溶菌酶(LYSO)的相互作用进行了研究。结果表明,FIE与LYSO的猝灭方式是静态猝灭,且在298和310K温度下的猝灭常数Ka分别为4.10×104和0.74×104 L·mol~(-1)。根据热力学参数的计算结果可知,FIE与LYSO的结合作用力主要是氢键和范德华力,结合距离(r=3.16nm,8nm)表明从LYSO到FIE发生了非辐射能量转移。希尔系数的计算结果表明,在不同温度下的nH1,LYSO和FIE的相互作用属于负协同作用。圆二色谱结果表明,LYSO和FIE的结合使LYSO的α-螺旋的含量由21.1%减少到8.8%。紫外光谱、三维荧光光谱、同步荧光光谱结果表明,LYSO和FIE的相互作用改变了LYSO的构象和微环境。分子对接进一步显示FIE通过氢键、极性键、疏水作用力等与LYSO活性部位的ASP-52,TRP-62,TRP-63等氨基酸残基相互作用。溶菌酶的活性实验表明,由于以上实验结果说明FIE引起了LYSO的构象改变,LYSO的活性随着FIE浓度的增大而降低,抑制了LYSO的活性。该研究结果为阐明FIE在机体内与LYSO的结合机理提供了可靠的实验数据和结果,为FIE对溶菌酶的的毒性评价和毒理学研究提供了理论依据。     

多光谱法和分子对接模拟法研究黄腐植酸和牛血清白蛋白的相互作用

在模拟生理环境中,使用荧光光谱法、紫外光谱法、圆二色谱法、同步荧光光谱法、三维荧光光谱法与分子对接模拟法研究黄腐植酸和牛血清白蛋白(BSA)之间相互作用。在荧光光谱法研究中,经Stern-Volmer方程计算得到298,303和308 K温度下的动态荧光猝灭速率常数K_q和猝灭常数,证明BSA与黄腐殖酸(FA)相互作用的猝灭过程为静态猝灭;同时根据计算得出的结合位点数n都在1附近,FA与BSA体系相互作用比为1∶1;利用静态猝灭双对数方程计算三个温度下的热力学参数,焓变ΔH<0,熵变ΔS＜0,得出结论,FA与BSA之间的主要作用力为氢键和范德华力;ΔG＜0,说明作用过程为自发过程。采用Förster’s偶极-偶极非辐射能量转移理论,计算出结合距离r=6.340 nm,表明BSA与FA之间存在非辐射能量转移。分子对接模拟结果表明FA与BSA残基的结合作用力具有氢键和范德华力,同时二者之间还存在疏水作用力,多种力共同作用使FA与BSA能够稳定结合。通过对FA与BSA相互作用的紫外-可见吸收光谱分析,发现BSA最大吸收峰发生了较为明显的红移,表明FA使BSA的二级结构发生改变。通过研究FA与BSA相互作用的同步荧光光谱,得到FA使BSA中的色氨酸（Trp）残基周围的微环境极性增强,疏水性减弱,亲水性增强,使BSA的蛋白质构象发生了一定程度的改变。通过研究FA与BSA相互作用的三维荧光光谱,峰1（peak 1）与峰2（peak 2）的最大发射波长峰都发生了红移,证明FA与BSA发生了相互作用,FA使BSA周围环境的极性增大,疏水性减小,亲水性增加,BSA蛋白质构象发生变化。最后采用圆二色谱法进行分析,利用软件计算得出该实验相互作用体系下α-螺旋（α-Helix）减少2.3％、β-折叠（β-sheet）增加7.7％、β-转角（β-Turn）增加0.6％和无规则结构（Random coil）含量减少1.2％,β-折叠（β-sheet）含量增加最为明显, 强有力地说明了FA使BSA结构发生了改变。     

光谱法结合分子对接模拟技术研究头孢他啶与胰蛋白酶的相互作用机理

本文主要通过荧光光谱法与分子对接技术研究了在298,303,310 K温度下头孢他啶(CFD)与胰蛋白酶(TRP)之间的作用机制。研究结果表明,CFD与TRP之间是通过1∶1的静态猝灭方式相互作用。依照双对数方程处理荧光猝灭数据得到了CFD与TRP作用的结合常数Ka和结合位点数n。通过热力学方程求得了不同温度下CFD与TRP作用的热力学参数。实验数据表明,它们之间的作用力主要是疏水作用和氢键作用,这与分子对接技术所得的结果是一致的。     

多光谱法与分子对接法研究盐酸四环素与牛血清白蛋白的相互作用

盐酸四环素属于抗生素类, 目前有关盐酸四环素和牛血清白蛋白二级结构的影响及作用机理报道较少。在模拟生理条件下,采用荧光光谱法、三维荧光光谱法、紫外-可见光谱法、圆二色谱法和傅里叶红外光谱法以及分子对接模拟法,研究了盐酸四环素与牛血清白蛋白(BSA)之间的相互作用。荧光光谱表明,盐酸四环素能有效猝灭BSA的内源荧光,猝灭机制属静态猝灭,通过Stern-Volmer方程计算结合常数Ka为2.813×105 L·mol-1(298 K)。根据Vant’s Hoff方程确定结合过程中的热力学参数ΔS=-151.1 J·mol-1·K-1、ΔH=-76.09 kJ·mol-1_, 两者之间作用为氢键和范德华力。同步荧光光谱、紫外光谱、三维荧光光谱、红外光谱、圆二色谱结果证明盐酸四环素能够改变BSA的二级结构和微环境。根据Föster’s非辐射能量转移理论,盐酸四环素与BSA结合距离为0.49 nm。希尔系数(n_H)值小于1,表明盐酸四环素与BSA结合后存在药物间协同作用。圆二色谱(CD)定量测定了盐酸四环素与BSA作用前后的二级结构含量：α-螺旋含量增加了9.16%(1:1)。分子对接模拟表明盐酸四环素通过氢键、疏水作用和范德华力等多种作用力结合在BSA的site Ⅰ(亚域ⅡA)。本研究有助于了解盐酸四环素与BSA的作用机制,也有助于理解盐酸四环素对蛋白质在储运过程中功能的影响。     

光谱法比较木犀草素及槲皮素与牛血清白蛋白相互作用

在模拟生理pH条件下,采用荧光光谱、紫外-可见吸收光谱、同步荧光光谱和圆二色谱法研究木犀草素及槲皮素与牛血清白蛋白（BSA）的相互作用的异同.结果确定木犀草素及槲皮素对BSA的荧光猝灭是以静态猝灭为主,同时伴随非辐射能量转移猝灭.木犀草素结合BSA的位点与荧光发射基团的距离比槲皮素的小.结合常数Ka表明二者与BSA的结合都属于强的非共价键结合,且结合位点数都约为1.二者均主要通过氢键和范德华力与BSA作用.二者都能影响BSA的酪氨酸残基附近环境的极性,且高浓度下能够引起BSA构象轻微地改变.结果表明黄酮C环上3位羟基的引入会降低其对BSA的亲和力.     

光谱法及分子对接技术研究黄体酮与牛血清白蛋白的结合机制

黄体酮(Progesterone,PROG)是临床用于治疗先兆流产的常用药物之一,但其在生物体内的运输机制尚不明确。本文整合荧光光谱、红外光谱及分子对接等实验技术研究了PROG和牛血清白蛋白(BSA)之间的相互作用机制。光谱学实验结果表明,PROG在BSA的结合位点Ⅰ处与其结合,从而引起BSA的内源荧光猝灭,猝灭机制为静态猝灭和非辐射能量转移,两者之间的结合距离为1.63 nm。在人体正常体温条件下,两者的结合常数为1.423×10~4 L·mol~(-1)。根据热力学公式计算得到两者结合过程中ΔH=-65.31 kJ·mol~(-1)和ΔS=-131.63 J·mol~(-1)·K~(-1),说明PROG和BSA之间的主要作用力为氢键和范德华力。红外光谱研究结果表明,PROG能使BSA构象发生改变,其中α-螺旋结构和β-片层结构含量下降,β-折叠结构含量上升。分子对接结果表明,PROG与Trp214之间的相互作用是引起BSA荧光猝灭的主要原因,且PROG与Lys195残基之间存在的氢键有利于PROG-BSA复合物的稳定。分子对接结果与光谱实验结果相互印证,为揭示PROG在人体运输储藏过程提供了数据支撑。     

新型羧酸卟啉锌(Ⅱ)配合物与人血清蛋白的作用

卟啉是一种潜在有效的光动力治疗癌症的光敏剂,部分已用于临床实验中。人血清蛋白(HSA)是药物的运输载体,详细研究两者的相互作用对于阐述卟啉类药物的药代动力学行为具有重要的意义。合成了一种新型水溶性羧酸锌(Ⅱ)卟啉配合物(2-Zn),并通过紫外可见吸收光谱、荧光光谱、圆二色(CD)光谱和分子对接模拟研究了其与人血清蛋白(HSA)的相互作用。结果表明：2-Zn以静态猝灭的方式猝灭了HSA的内源荧光,通过计算得到其与HSA在298和310 K下相互作用的猝灭常数分别为1.96×104和1.37×104 L·mol-1、结合常数分别为1.93×104和1.50×104 L·mol-1、结合位点数均为1,两者间的结合作用力以静电作用为主,同时也存在氢键和疏水作用。位点竞争实验表明2-Zn主要结合在位点Ⅱ处;根据Forster非辐射能量理论得到两者的结合距离和能量转移效率分别为4.01 nm和0.163。紫外吸收光谱,同步荧光和CD光谱显示2-Zn与HSA的相互作用影响了HSA 的构象,表现为α-螺旋的含量降低;分子对接模拟结果表明2-Zn通过疏水、静电和氢键作用嵌入HSA分子的亚结构域IIIA(site Ⅱ)的疏水腔内,与位点竞争实验和热力学判据所得的结果相一致。     

环丙沙星、氧氟沙星同时与牛血清白蛋白分子作用的荧光光谱

在pH=7.40的水溶液中,环丙沙星(CPFX)、氧氟沙星(OFLX)能够猝灭牛血清白蛋白(BSA)的荧光。当两种药物共存时BSA荧光被进一步猝灭。据此建立了利用荧光发光光谱法进行喹诺酮类药物CPFX与OFLX间相互作用的研究。结果表明:药物间存在相互作用,使药物与蛋白间的结合常数减小、结合稳定性下降,游离型药物含量增加,造成药效增强;药物对蛋白荧光的猝灭属于静态猝灭,药物与蛋白结合位点数约为1。根据Frster非辐射能量转移理论,确定了药物与蛋白之间的结合距离r7nm,属于非辐射能量转移。药物间的相互作用使r值增加,结合距离增大。同步荧光光谱研究表明药物间的相互作用对蛋白构象产生影响,使蛋白质分子伸展,疏水性降低。     

肌红蛋白与生物碱相互作用的光谱性质研究

用分子荧光光谱法和紫外可见分光光度法研究了肌红蛋白（myoglobin,Mb）与咖啡因、茶碱相互作用的光谱性质变化。据Stern-Volmer图得到猝灭常数,由紫外-可见吸收光谱判断均为静态猝灭,通过热力学常数得出其相互作用力为静电作用,依据Foerster偶极-偶极无辐射能量转移理论计算出Mb与生物碱间的距离,并用同步荧光光谱技术考察了生物碱对Mb构象的影响。     

Spectrophotometric studies on the interaction between pazufloxacin mesilate and human serum albumin or lysozyme

The binding of pazufloxacin mesilate (PZFX) to human serum albumin (HSA) or lysozyme (Lys) was investigated using spectrophotometric techniques. The intrinsic fluorescence of both HSA and Lys was strongly quenched by PZFX. This effect was rationalized in terms of a static quenching procedure. Negative values of ΔH⁰ and ΔS⁰ for the formation of PZFX-HSA or PZFX-Lys complex implied that both hydrogen bonds and hydrophobic interactions might play a significant role in PZFX binding to HSA or Lys. The binding distances deduced from the efficiency of energy transfer were 4.04 and 3.21 nm for PZFX-HSA and PZFX-Lys systems, respectively. Furthermore, association constants and binding mechanism were successfully derived from the synchronous fluorescence spectra. Circular dichroism (CD) spectra and UV/vis detections supported a change in the secondary structure of proteins caused by the interaction of PZFX with HSA or Lys.     

Spectrophotometric studies on the binding of Vitamin C to lysozyme and bovine liver catalase

The patterns of Vitamin C (ascorbic acid) binding to lysozyme (LYSO) and bovine liver catalase (BLC) were investigated at 298, 308 and 316 K at pH 7.40 using spectrophotometric techniques. The quenching mechanism, binding constant and the number of binding sites were determined by fluorescence experiments. Moreover, the Stern-Volmer fluorescence quenching constant (K_SV) of LYSO by Vitamin C was more sensitive to the temperature changes than that of BLC by Vitamin C. The thermodynamic data suggest that hydrogen bonds were the predominant intermolecular forces in the binding reaction. The effect of Vitamin C on the conformation of LYSO or BLC was analyzed using synchronous fluorescence, UV-vis absorption and circular dichroism (CD) spectra.     

计算机模拟和光谱法研究头孢他美酯与胃蛋白酶的结合机理

采用多种光谱法及计算机模拟技术研究了298,303,310 K温度下,头孢他美酯（CFP）与胃蛋白酶（PEP）之间的结合机理。结果表明,CFP主要以非辐射能量转移的静态猝灭方式猝灭PEP的荧光,两者主要通过静电作用力结合,其结合率在310 K为74.73%~92.13%。采用同步荧光法和圆二色谱法研究CFP对PEP的反应,结果表明两者的结合诱导了PEP的构象变化,使PEP的内源荧光猝灭。采用计算机模拟CFP与PEP的对接,结果表明CFP结合在PEP的催化活性位点处,该结论与光谱法所得结果一致。利用CFP对PEP的荧光猝灭反应,可以实现对实际药品中CFP含量的快速测定。     

Fluorescence Investigation on the Interaction of a Prevalent Competitive Fluorescent Probe with Entomic Odorant Binding Protein

In recent years, one prevalent competitive fluorescent probe, N-phenyl-1-naphthylamine (1-NPN), was frequently utilized to measure the binding affinity of entomic odorant binding proteins (OBPs) with diverse plant volatiles or pheromones. Nevertheless, the details and model of the binding interaction are still largely unknown, although it is vital to investigate the physiological function of OBPs. Here we studied the binding interaction between 1-NPN and OBP2, a recombinant OBP from eastern honeybee, Apis cerana, by the combination of fluorescence quenching spectra, synchronous fluorescence spectra, ultraviolet spectra, circular dichroism spectra, and molecular docking. The Stern–Volmer curve of the fluorescence quenching of OBP2 by 1-NPN indicated it was a static quenching mechanism, and the binding constants and binding number were determined, respectively. Based on the Förster theory of nonradiation energy transfer (FRET), the binding distance was calculated, and the intrinsic fluorescent energy was predicted to transfer from the donor OBP2 to the acceptor 1-NPN. Synchronous fluorescence spectra and circular dichroism spectra were used to investigate the conformational change in binding progress. The thermodynamic parameters showed that the interaction was mainly driven by hydrophobic force, which was validated by the molecular docking; meanwhile, the binding mode was revealed and one hydrogen bond was found between the nitrogen atom of 1-NPN and Glu29 of OBP2.     

Interaction of hen egg white lysozyme with cefpiramide sodium: multi-spectroscopic and computational simulations

Abstract

Under simulated physiological conditions (pH?=?7.40), the interaction between cefpiramide sodium and hen egg white lysozyme was studied with multi-spectroscopy and molecular docking. The results showed that cefpiramide sodium quenched the fluorescence of hen egg white lysozyme by static quenching, and the number of binding site n was about 1. The binding distance (r) between cefpiramide sodium and hen egg white lysozyme was obtained based on the Förster nonradioactive resonance energy transfer and r was less than 7?nm, which indicated that there was a non-radiative energy transition in the system. The thermodynamic parameters were obtained from the van't Hoff equation, and the Gibbs free energy ΔG?H?S?>?0, indicating hydrophobic interaction played a major role in forming the cefpiramide sodium-hen egg white lysozyme complex. Synchronous spectra, circular dichroism spectra and UV-Vis spectra showed that cefpiramide sodium changed the conformation of hen egg white lysozyme. The molecular docking results showed that the binding position of cefpiramide sodium was close to the active center composed of Asp52 and Glu35 residues, suggesting that cefpiramide sodium could change the microenvironment of amino acid residues at the catalytic active center of hen egg white lysozyme.     

Investigation of Binding Properties of Umbelliferone (7Hydroxycoumarin) to Lysozyme

The binding interaction of lysozyme and umbelliferone (7hydroxcoumarin, 7HC) was investigated by UV–vis absorption and fluorescence quenching. It was obtained from fluorescence spectra that the fluorescence quenching of lysozyme by 7HC was probably a result of the formation of lysozyme-7HC complex and binding parameters were determined according to the Stern-Volmer equation. The effects of various common metal ions on the binding were also studied. The thermodynamic parameters were calculated at different temperatures which indicated that hydrophobic interaction. The binding distance (r) between the donor (lysozyme) and the acceptor (7HC) was 3.81 nm based on the Förster theory of non-radioactive resonance energy transfer.     

Interaction mechanism between 4-aminoantipyrine and the enzyme lysozyme

4-Aminoantipyrine (AAP) is scarcely administered as a kind of analgesic drug because of the side effect. The residue of AAP in the environment poses a potential threat to human health. To evaluate the toxicity of AAP at the protein level, the effects of AAP on lysozyme were investigated using spectroscopic and molecular docking methods. Addition of AAP effectively quenched the intrinsic fluorescence of lysozyme. Static quenching of lysozyme by AAP revealed the formation of complex. After the inner filter effect was eliminated, the number of binding sites, the binding constant and the thermodynamic parameters were measured, and indicated that AAP can spontaneously bind with lysozyme through hydrophobic interactions with one binding site. Molecular docking results revealed that AAP bound into the enzyme active site and interacted with the Trp 62 and Trp 63 residues of lysozyme, which illustrated that the lysozyme activity was inhibited by AAP, in accordance with the results of the lysozyme activity experiment. Furthermore, the binding of AAP can result in demonstrable change of the conformation of lysozyme. This work is helpful for clarifying the molecular toxic mechanism of AAP in vivo.     

荧光光谱法研究核黄素与核黄素结合蛋白的相互作用

运用荧光光谱研究了核黄素与核黄素结合蛋白的相互作用,并探讨了两者间的结合类型、结合常数、结合过程中热力学参数和能量转移。结果表明:核黄素结合蛋白内源荧光的猝灭是由于核黄素与蛋白质之间形成复合物,并符合静态猝灭机理。298,308,318K下核黄素与核黄素结合蛋白的结合常数分别为:5.35×108,1.54×108,0.56×108 L.mol-1。热力学数据表明核黄素与核黄素结合蛋白之间主要作用力为氢键和范德华力。Frster能量转移理论确定了核黄素与核黄素结合蛋白的作用距离与能量转移效率分别为0.70nm与0.39。利用同步荧光光谱研究了核黄素结合蛋白与核黄素结合过程中构象的变化。