生物小分子的电分析化学研究 Ⅱ.鸟嘌呤、腺嘌呤和次黄嘌呤在粗热解石墨电极上的分子定向和表面相互作用

本文讨论了鸟嘌呤、腺嘌呤和次黄嘌呤等嘌呤类生物小分子在几种电极上的反应活性,并选用粗热解石墨电极研究了它们的电化学性质.实验结果表明它们的电极过程是受吸附作用控制的.在粗热解石墨电极上鸟嘌呤以C(2)-NH~2、腺嘌呤以C(6)-NH~2、次黄嘌呤以N(1)-H基团按垂直方向吸附于电极表面,电极表面分子间存在着相斥的相互作用.鸟嘌呤、腺嘌呤和次黄嘌呤的吸附平衡常数分别为:(3.34±1.00)×10^5,和(4.38±1.20)×10^5和(4.13±1.21)×10^5;吸附能分别为:(31.5±0.77),(32.1±0.70)和(32.0±0.75)kJ/mol.这些数值表明它们在粗热解石墨电极上具有中等偏强的物理吸附作用.     

Voltammetric studies of purine bases and purine nucleosides with copper

Anodic stripping voltammetry with a hanging mercury drop electrode has been used to investigate the interaction of cooper with the purines adenine, hypoxanthine, xanthine and purine nucleosides adenosine, guanosine and inosine at an ionic strength of 0.1 M in KNO₃ and in the pH range 3.5–5.5. In all cases stabilisation of copper(I) occurs suggesting that the oxidation of copper(0) in the presence of excess ligand proceeds in two one-electron steps.Adsorption onto the electrode has been analysed and conditions where this is negligible were chosen for complexation studies. From the shift of the peak potential corresponding to Cu(0)/Cu(I) oxidation with increasing ligand concentration the stoichiometry of the complexes and their formation constants have been determined. The values obtained are discussed in terms of the ligand structure.     

Detection of the cell viability and proliferation using two-signal electrochemical method

Two electrochemical signals of the MCF-7 cell were simultaneously detected by using multiwall carbon nanotubes and room temperature ionic liquid composite film modified electrode. The signal at +0.726 V due to the oxidation of xanthine and guanine, was obviously improved. And the signal at +1.053 V due to the oxidation of hypoxanthine and adenine was found for the first time. This two-signal electrochemical method is credible to detect cell viability and proliferation.     

Electrochemical study of the interaction between dsDNA and copper(I) using carbon paste and hanging mercury drop electrode

The interaction of copper(I) with double-stranded (ds) calf thymus DNA was studied in solution and at the electrode surface by means of transfer voltammetry using a carbon paste electrode (CPE) as working electrode in 0.2 M acetate buffer solution (pH 5.0). As a result of the interaction of Cu(I) between the base pairs of the dsDNA, the characteristic peaks of dsDNA, due to the oxidation of guanine and adenine, increased and after a certain concentration of Cu(I) a new peak at +1.37 V appeared, probably due to the formation of a purine-Cu(I) complex (dsDNA-Cu(I) complex). Accordingly, the interaction of copper(I) with calf thymus dsDNA was studied in solution as well as at the electrode surface using hanging mercury drop electrode (HMDE) by means of alternating current voltammetry (AC voltammetry) in 0.3 M NaCl and 50 mM sodium phosphate buffer (pH 8.5) as supporting electrolyte. Its interaction with DNA is shown to be time dependent. Significant changes in the characteristic peaks of dsDNA were observed after addition of higher concentration of Cu(I) to a solution containing dsDNA, as a result of the interaction between Cu(I) and dsDNA. All the experimental results indicate that Cu(I) can bind to DNA by electrostatic binding and form an association complex.     

Pyrazolylborate-zinc-nucleobase-complexes, 2:(1) preparations and structures of Tp(Cum,Me)Zn and Tp(Ph,Me)Zn complexes

The interactions of the nine most significant nucleobases (thymine, uracil, dihydrouracil, cytosine, adenine, guanine, diaminopurine, xanthine, hypoxanthine, in their deprotonated forms) with zinc and with themselves in pyrazolylborate zinc complexes Tp(Cum,Me)Zn-base and Tp(Ph,Me)Zn-base are described. Except for guanine, the complexes Tp*Zn-base could be isolated in all cases. Structure determinations could be performed for seven of the eight product types. Except for dihydrouracil and xanthine, the zinc ion is attached to that nitrogen of the base which in nucleosides bears the sugar moiety. In the solid state, all zinc-bound nucleobases are involved in hydrogen bonding interactions. Except for xanthine, this includes homo base pairing across a crystallographic inversion center.     

Ultrafast nonradiative decay by hypoxanthine and several methylxanthines in aqueous and acetonitrile solution

Excited state lifetimes of hypoxanthine and four methylxanthine compounds (paraxanthine, theophylline, theobromine, and caffeine) were studied by femtosecond transient absorption spectroscopy in aqueous and acetonitrile solution. Transient absorption signals recorded at visible and UV probe wavelengths reveal that internal conversion from the photoexcited state to the electronic ground state takes place in water on the hundreds of femtoseconds time scale. Excited-state relaxation occurs approximately threefold more slowly in acetonitrile solution than in water. Structural considerations suggest that the deactivating conical intersection for the methylxanthines differs from that responsible for nonradiative decay by hypoxanthine, adenine, and guanine. All compounds studied have ultrashort excited state lifetimes similar to those of adenine and guanine, suggesting that these xanthine derivatives could have been photostable building blocks in prebiotic environments exposed to intense UV radiation.     

Electrochemistry and Simultaneous Detection of Metabolites of Purine Nucleotide Based on Large Mesoporous Carbon Modified Electrode

A large mesoporous carbon modified glassy carbon electrode (LMC/GCE) was prepared. The morphology and structure of the LMC were characterized. The LMC/GCE was used to investigate the electrochemical behaviors of metabolites of purine nucleotide, uric acid (UA), xanthine (XA) and hypoxanthine (HX). The LMC/GCE exhibited high electrocatalytic activity towards the three compounds when compared with those obtained at the GCE. Furthermore, the LMC/GCE realized simultaneous determination of UA, XA and HX at a physiological pH of 7.0 with wide linear range and low detection limit. The electrocatalytic activity of the LMC/GCE towards guanine (G) and adenine (A) was also investigated.     

Acidity and proton affinity of hypoxanthine in the gas phase versus in solution: intrinsic reactivity and biological implications

Hypoxanthine is a mutagenic purine base that most commonly arises from the oxidative deamination of adenine. Damaged bases such as hypoxanthine are associated with carcinogenesis and cell death. This inevitable damage is counteracted by glycosylase enzymes, which cleave damaged bases from DNA. Alkyladenine DNA glycosylase (AAG) is the enzyme responsible for excising hypoxanthine from DNA in humans. In an effort to understand the intrinsic properties of hypoxanthine, we examined the gas-phase acidity and proton affinity using quantum mechanical calculations and gas-phase mass spectrometric experimental methods. In this work, we establish that the most acidic site of hypoxanthine has a gas-phase acidity of 332 +/- 2 kcal mol-1, which is more acidic than hydrochloric acid. We also bracket a less acidic site of hypoxanthine at 368 +/- 3 kcal mol-1. We measure the proton affinity of the most basic site of hypoxanthine to be 222 +/- 3 kcal mol-1. DFT calculations of these values are consistent with the experimental data. We also use calculations to compare the acidic and basic properties of hypoxanthine with those of the normal bases adenine and guanine. We find that the N9-H of hypoxanthine is more acidic than that of adenine and guanine, pointing to a way that AAG could discriminate damaged bases from normal bases. We hypothesize that AAG may cleave certain damaged nucleobases as anions and that the active site may take advantage of a nonpolar environment to favor deprotonated hypoxanthine as a leaving group versus deprotonated adenine or guanine. We also show that an alternate mechanism involving preprotonation of hypoxanthine is energetically less attractive, because the proton affinity of hypoxanthine is less than that of adenine and guanine. Last, we compare the acidity in the gas phase versus that in solution and find that a nonpolar environment enhances the differences in acidity among hypoxanthine, adenine, and guanine.     

Fabrication of Cu−CeO2 Coated Multiwall Carbon Nanotube Composite Electrode for Simultaneous Determination of Guanine and Adenine

A copper nano particles and cerium (IV) oxide modified carbon nanotube based composite on glassy carbon electrode (Cu−CeO₂/MWCNT/GCE) was fabricated for simultaneous determination of guanine and adenine. The surface morphology, chemistry and conductance of the prepared electrodes were characterized by scanning electron microscopy (SEM), energy dispersion X‐ray (EDX), X‐Ray photoelectron spectroscopy (XPS) and electrochemical impedance spectroscopy (EIS). The Cu−CeO₂/MWCNT/GCE improved electrochemical behaviour of guanine and adenine compared to other electrodes. The modified electrode was also used for individual and simultaneous determination of guanine and adenine. Under optimized conditions, the calibration curves were obtained linearly in the range of 0.20 to 6.00 μM for the guanine and 0.10 to 8.0 μM for the adenine by differential pulse voltammetry. The limits of detection of guanine and adenine were calculated as 0.128 and 0.062 μM, respectively. Interferences studies were also performed in the presence of inorganic and organic compounds. Moreover, the determination of guanine and adenine contents were carried out in a calf thymus DNA sample by the developed method with satisfactory results.     

Self-catalytic mechanism of prebiotic reactions: From formamide to purine bases

Complete reaction pathway of prebiotic reactions for formation of the purine nucleobases adenine, hypoxanthine, guanine, isoguanine, 2,6-diaminopurine, and xanthine from pure formamide are presented. All reactants (hydrogen cyanide, ammonia, water, formic acid, urea) and catalysts (formamide and formimidic acid) needed in the self-catalyzed reactions are available from a starting compound, formamide. The required raw materials are obtained by partial decomposition of formamide.     

4种动物药水提液中3种嘌呤碱HPLC法测定

以甲醇/水为流动相,反相高效液相色谱-紫外检测器测定了乌蛇、蟾蜍、土虫、地龙水提取液中黄嘌呤、次黄嘌呤、腺嘌呤的含量,对样品提取和高效液相色谱条件进行了优化。 黄嘌呤、次黄嘌呤、腺嘌呤的检出限分别为0.012×10-6、0.041×10-6、0.042×10-6 g/mL,样品分析的日内测定相对标准偏差分别小于4.1%、7.3%、4.5%,日间测定相对标准偏差分别小于5.8%、2.9%、3.1%,平均加标回收率为94%～107%。     

Complexing properties of nucleic-acid constituents adenine and guanine complexes

Cobalt, nickel and copper complexes of adenine and guanine, as nucleic-acid constituents, were prepared. The adenine and guanine complexes are of tetrahedral and octahedral geometries, respectively. All are of high spin nature. The nickel complexes are of 2:1 metal:ligand ratio with Ni...Ni direct interaction in the guanine complex. The coordination bonds of adenine metal complexes are calculated and follow the order: Cu(II)-adenine < Ni(II)-adenine < Co(I)-adenine. The Cu(II)-adenine complex is the stronger following the softness of the copper, while that of guanine is less covalent. The copper complexes are with stronger axial field. The differential thermal analysis (DTA) and TGA of the complexes pointed to their stability. The mechanism of the thermal decomposition is detected. The thermodynamic parameters of the dissociation steps are evaluated. The complexes are of semi-conducting behaviour for their technical applications. Empirical equations are deduced between the electrical conducting and the energy of activation of the complexes.     

Isocratic separation of some purine nucleotide, nucleoside, and base metabolites from biological extracts by high-performance liquid chromatography.

Separation of ATP, ADP, AMP, adenine, adenosine, cAMP, ITP, IDP, IMP, hypoxanthine, inosine, cIMP, the guanine series, NAD, NADPH, xanthine, 3-methylxanthine, theobromine, theophylline, and caffeine was accomplished using high-performance liquid chromatography with a microparticulate reversed-phase column. Under isocratic conditions all compounds could be eluted with reasonable resolution and retention time. Quantitation by peak height for several of the compounds was used to the 10-ng level.     

Theoretical and gas-phase studies of specific cationized purine base quartet

Guanine tetraplexes are biological non-covalent systems stabilized by alkali cations. Thus, self-clustering of guanine, xanthine and hypoxanthine with alkali cations (Na(+), K(+) and Li(+)) is investigated by electrospray ionization mass spectrometry (ESI-MS) in order to provide new insights into G-quartets, hydrogen-bonded complexes. ESI assays displayed magic numbers of tetramer adducts with Na(+), Li(+) and K(+), not only for guanine, but also for xanthine bases. The optimized structures of guanine and xanthine quartets have been determined by B3LYP hybrid density functional theory calculations. Complexes of metal ions with quartets are classified into different structure types. The optimized structures obtained for each quartet explain the gas-phase results. The gas-phase binding sequence between the monovalent cations and the xanthine quartet follows the order Li(+) > Na(+) > K(+), which is consistent with that obtained for the guanine quartet in the literature. The smallest stabilization energy of K(+) and its position versus the other alkali metal ions in guanine and xanthine quartets is consistent with the fact that the potassium cation can be located between two guanine or xanthine quartets, for providing a [gua(or (xan))(8)+K](+) octamer adduct. Even if an abundant octamer adduct with K(+) for xanthine was detected by ESI-MS, it was not the case for guanine.     

Ionization potentials and donor properties of nucleic acid bases and related compounds

The first vertical ionization potentials of guanine, adenine, hypoxanthine, xanthine, cytosine, thymine, uracil and purine have been determined by HeI photoelectron spectroscopy. The potentials increase in the above order and are assigned to ionization from the highest π level. The experimental results are compared with valence shell SCF calculations, and the correlation between the association constants of these molecules with riboflavin and their donor properties is discussed. Detailed spectra will be presented and discussed in a forthcoming paper.     

Cathodic and anodic stripping determination of traces of adenine and adenosine based on accumulation of copper(I) compounds at mercury or amalgam electrodes

In the presence of adenine and adenosine, the copper(II)/copper(Hg) couple splits to the copper(II)/copper(I) and copper(I)/copper(Hg) couples. Sparingly soluble complexes of copper(I) with adenine and adenosine can be accumulated on the electrode surface either by reduction of Cu(II) ions or by oxidation of the copper amalgam electrode. The copper(I)/adenine deposit can be stripped either cathodically or anodically with detection limits of 5×10^?9 and 2×10^?8 mol dm^?3, respectively. The copper(I)/ adenosine complex yields only the cathodic stripping peak with a detection limit of 9×10^?6 mol dm^?3. The stripping peaks obtained for the copper(I)/adenine and copper(I)/ adenosine complexes are better defined and appear over a wider range of pH than the peaks related to the corresponding mercury compounds. Adenosine cannot be determined in the presence of adenine bur adenine can be determined in the presence of moderate amounts of adenosine.     

Low-potential amperometric determination of purine derivatives through surface oxide regeneration method

This article described a novel amperometry which can be used for determination of purine derivatives including uric acid, xanthine, hypoxanthine, guanine, and adenine without surface contamination. By applying a constant potential of −0.125 V (vs. Ag/AgCl) in a flow injection system, the chelating capability of these purine derivatives converts the cuprous oxide layer into a soluble complex. This behavior would dissolve the passive oxide layer and expose the bottom copper layer to the solution, subsequently; an oxidation current which attributed to the regeneration of the original cuprous oxide layer is used to reflect the concentration of these purine derivatives. In a 50 mM phosphate buffer, pH 7.0, this approach provides a high sensitivity with LOQ of sub-micro molar level of five purines and high stability with a RSD of 2.5% for 10 μM xanthine (N = 12). This method does not suffer from most biological species including ascorbic acid, acetaminophen, creatine, dopamine, sarcosine, ammonium ion, chloride ion, and urea at equal or higher than its physiological concentration.     

pH/R f diagrams of nucleotide bases

The chromatographic mobilities of uracil, cytosine, thymine, orotic acid, adenine, guanine, hypoxanthine, and xanthine as functions of the pH of buffer systems in the pH range from 0 to 12 have been studied by absorption chromatography on paper. Changes in R _f are observed comparatively rarely in the regions of the pK_a values.     

A Pencil Graphite Electrode In Situ Modified by Monovalent Copper: a Promising Tool for the Determination of Methylxanthines

A pencil graphite electrode (PeGE) exhibits a promising tool for the electrochemical analysis of xanthine (Xan) and its N‐methyl derivatives (1‐, 3‐, 7‐ and 9‐mXan). The changes in their level in blood, serum, urine, as products of purine catabolism, can indicate the development of some diseases. Sensitivity‐enhanced voltammetric detection of mXans was achieved by forming of complex with Cu(I) and application of elimination procedure. The Cu(I)‐mXan complex was identified by means of titration of electrochemically produced cuprous ions by mXan. Our approach enables separation of overlapped mXan oxidation signals. Based on the obtained results, we found that the effect of methyl group position on the xanthine skeleton was significant and it was also discussed.     

A comparative QM/MM simulation study of the reaction mechanisms of human and Plasmodium falciparum HG(X)PRTases

QM/MM hybrid potential free-energy simulations are performed to compare the reaction mechanisms of human hypoxanthine guanine phosphoribosyl transferase (HGPRTase) and the corresponding enyzme from Plasmodium falciparum (Pf), hypoxanthine guanine xanthine phosphoribosyl transferase (HGXPRTase). These enzymes share 44% of sequence identity but display very different affinities for xanthine. The calculations show that in both enzymes phosphoribosyl transfer proceeds via a dissociative mechanism from an anionic form of the substrate. Nevertheless, there are significant differences in the geometries of critical structures along the reaction paths which it may be possible to exploit for the design of specific inhibitors against the Pf enzyme.