Formation of a DNA layer on Langmuir-Blodgett films and its enzymatic digestion

Here, we report a system we have developed where long double-stranded DNAs (dsDNAs) are immobilized on a monolayer of Zn-arachidate. We have applied the Langmuir-Blodgett technique to form the monolayer of Zn-arachidate where Zn(II) is bound to arachidic acid through charge neutralization. Because tetrahedral Zn(II) participates in DNA recognition through coordination, we have been able to layer DNA over the Zn-arachidate monolayer. The DNA layer shows a typical compression and expansion cycle in a concentration-dependent fashion. Interestingly, the DNA monolayer is available for enzymatic degradation by DNaseI. The detection of DNA and its accessibility towards biological reaction is demonstrated by imaging through fluorescence microscopy. The conformation of the DNA, immobilized on the monolayer, was studied with the help of atomic force microscopy (AFM). We observed that the dsDNAs were aligned in a stretched manner on the surface. To investigate further, we also demonstrate here that the small single-stranded DNA (ssDNA) immobilized on the air-water interface can act as a target molecule for the complementary ssDNA present in the subphase. The study of DNA hybridization done with the help of fluorescence spectroscopy clearly supports the AFM characterization.     

DNA Assisted Assembly of Multisegmented Nanowires

This work demonstrates a highly specific and selective assembly of multisegmented nanowires on prepatterned gold electrodes using DNA hybridization. Multisegmented Au/Pd/Au nanowires were synthesized using template‐directed electrodeposition. Two complementary single‐stranded DNAs modified with thiol tags adsorb on gold electrodes and gold segments of nanowires, and enable the nanowires to assemble across electrodes. The assembled nanowires show ohmic contact with minimum contact resistance. Using these nanowires, the temperature dependent electrical resistance and the sensing performance toward hydrogen were investigated. The temperature coefficient of resistance of nanowires was lower than bulk polycrystalline counterpart, because of higher electron scattering at the surface and grain boundaries of nanowires. The nanowires were sensitive toward hydrogen gas at room temperature with a detection limit of 0.5%.     

Sequence-specific detection of femtomolar DNA via a chronocoulometric DNA sensor (CDS): effects of nanoparticle-mediated amplification and nanoscale control of DNA assembly at electrodes

We herein report a novel nanoparticle-based electrochemical DNA detection approach. This DNA sensor is based on a "sandwich" detection strategy, which involves capture probe DNA immobilized on gold electrodes and reporter probe DNA labeled with gold nanoparticles that flank the target DNA sequence. Electrochemical signals are generated by chronocoulometric interrogation of [Ru(NH(3))(6)](3+) that quantitatively binds to surface-confined capture probe DNA via electrostatic interactions. We demonstrated that the incorporation of a gold nanoparticle in this sensor design significantly enhanced the sensitivity and the selectivity. Nanoscale control of the self-assembly process of DNA probes at gold electrodes further increased the sensor performance. As a result of these two combined effects, this DNA sensor could detect as low as femtomolar (zeptomoles) DNA targets and exhibited excellent selectivity against even a single-base mismatch. In addition, this novel DNA sensor showed fairly good reproducibility, stability, and reusability.     

以DNA为模板构造苯胺-DNA复合物纳米线和聚苯胺纳米导线

在溶液中, 以DNA为模板构造出了线性的苯胺-DNA复合物纳米线. 用压缩气流将得到的复合物纳米线拉直并固定到云母基底上. 用原子力显微镜(AFM)可观察到形貌规整的苯胺-DNA复合物纳米线. 苯胺单体在溶液中能从各个方向上组装到DNA分子上, 从而使DNA模板分子的表面包裹了一层苯胺. 以苯胺-DNA复合物纳米线为前驱体通过进一步化学氧化聚合得到了以DNA为模板的聚苯胺纳米导线.     

Luminescence quenching in self-assembled adducts of [Ru(dpp)3]2+ complexes and CdTe nanocrystals

We have investigated chloroform solutions containing tris(4,7-diphenyl-1,10-phenanthroline) ruthenium(II) and CdTe nanocrystal quantum dots (5.6 nm diameter). The electronic levels of these two components are such that the Ru complex can act as an energy donor towards the quantum dot, which can thus behave as an energy acceptor. Steady-state and time-resolved spectroscopic experiments indicate that the Ru complexes and the CdTe nanocrystals self-assemble to give stable 1?:?1 adducts, in which the luminescence of the former units is strongly quenched. Such a quenching can be ascribed to either energy transfer to the CdTe quantum dot, or to electron transfer from the CdTe valence band to the excited Ru complex. However, no supporting evidence for the occurrence of photoinduced energy transfer in the adduct could be found. The CdTe luminescence is also slightly quenched in the presence of the ruthenium complex. The strong association of the metal complexes with the nanocrystals suggests that self-assembly strategies may be effectively employed to achieve surface functionalization of semiconductor quantum dots with molecular units.     

Spatially controlled DNA nanopatterns by "click" chemistry using oligonucleotides with different anchoring sites

DNA patterning on surfaces has broad applications in biotechnology, nanotechnology, and other fields of life science. The common patterns make use of the highly selective base pairing which might not be stable enough for further manipulations. Furthermore, the fabrication of well-defined DNA nanostructures on solid surfaces usually lacks chemical linkages to the surface. Here we report a template-free strategy based on "click" chemistry to fabricate spatially controlled DNA nanopatterns immobilized on surfaces. The self-assembly process utilizes DNA with different anchoring sites. The position of anchoring is of crucial importance for the self-assembly process of DNA and greatly influences the assembly of particular DNA nanopatterns. It is shown that the anchoring site in a central position generates tunable nanonetworks with high regularity, compared to DNAs containing anchoring sites at terminal and other positions. The prepared patterns may find applications in DNA capturing and formation of pores and channels and can serve as templates for the patterning using other molecules.     

Size-tuneable and micro-patterned iron nanoparticles derived from biomolecules via microcontact printing SAM-modified substrates and controlled-potential electrolyses

Site-selected and size-controlled iron nanoparticles were prepared on coplanar surfaces via microcontact printing of SAM-modified Au/mica electrodes and controlled-potential electrolytic reactions using ferritin biomolecules. Ferritin molecules packed like a full monolayer on 6-amino-1-hexanethiol (AHT)- and 11-amino-1-undecanethiol (AUT)-modified Au/mica surface via electrostatic interactions, which did not depend on the chain length of the amino terminal alkane thiols. After heat-treatment at 400 degrees C for 60 min, iron oxide nanoparticles (ca. 5 nm in diameter) derived from ferritin cores were observed at the Au/mica surface by atomic force microscopy (AFM). On the study on the electrochemistry of ferritin immobilized onto AHT- and AUT-modified Au/mica electrodes, the redox response of the ferritin immobilized AHT-modified electrode was clearly observed. On the other hand, no redox peak for ferritin was obtained at the AUT-modified electrode. The electron transfer between ferritin and the electrode through the AUT membrane could not take place. The difference in the electrochemical response of ferritin immobilized onto AHT- and AUT-modified Au/mica was caused by the chain length of the amino terminal alkane thiols. Uniform patterns of AHT and AUT on the Au/mica electrode surface were performed by use of a poly(dimethylsiloxane) (PDMS) stamp. After the immobilization of ferritin onto both AHT- and AUT-modified electrode surfaces, the modified electrode was applied to a -0.5 V potential for 30 min in a phosphate buffer solution. After this procedure, the PDMS stamp patterning image appeared by scanning electron microscopy (SEM) image. The SEM results induced by the size change of the ferritin core consisting of iron(III) by electrolysis.     

DNA-templated assembly and electropolymerization of aniline on gold surface

Biomolecule template gives new opportunities for the fabrication of novel materials with special features. Here we report a route to the formation of DNA–polyaniline (PAn) complex, using immobilized DNA as a template. A gold electrode was first modified with monolayer of 2-aminoethanethiol by self-assembly. Thereafter, by simply immersing the gold electrode into DNA solution, DNA molecules can be attached onto the gold surface, followed by the DNA-templated assembly and electropolymerization of protonated aniline. The electrostatic interactions between DNA and aniline can keep the aniline monomers aligning along the DNA strands. Investigations by surface plasmon resonance (SPR), electrochemistry and reflection–absorption UV/Vis–Near IR spectroscopy substantially convince that PAn can be electrochemically grown around DNA template on gold surface. This work may be provides fundamental aspects for building PAn nanowires with DNA as template on solid surface if DNA molecules can be individually separated and stretched.     

Microwave synthesis of electrically conductive gold nanowires on DNA scaffolds

Biological molecules, in particular DNA, have shown great potential to be used as interconnects of nanodevices and computational elements. In this research, we synthesized electrically conductive gold nanowires for the first time exploiting an electroless and microwave heating method for 120-180 s. Our results indicate that DNA serves as a reducing and nonspecific capping agent for the growth of nanowires. The current voltage ( I- V) characteristics of the Au nanowires are continuous, exhibiting Ohmic behavior having low contact resistance with the gold electrodes. The nanowires have a diameter of 10-15 nm in solution and of 20-30 nm in immobilized DNA with resistivity comparable to pure metals. The method is highly selective with deposition confined to the DNA itself. The nanowires we fabricated can be used as building blocks for functional nanodevices, sensors, and optoelectronics.     

Polyaniline nanowires on Si surfaces fabricated with DNA templates

It is essential to put individual, free-standing nanowires onto insulating substrates and integrate them to useful devices. Here we report a strategy for fabrication of conducting polymer nanowires on thermally oxidized Si surfaces by use of DNA as templates. The direct use of stretched and immobilized DNA strands as templates avoids the agglomeration of DNA caused by shielding of charges on DNA when polyaniline/DNA complexes formed in solution. Most importantly, the oriented DNA strands immobilized on the Si surface predetermine the position and the orientation of the nanowires. The approach described here is the first step toward uniting the programmable-assembly ability of DNA with the unique electronic properties of conducting polymers for high-density functional nanodevices. The conductivity of the nanowires is very sensitive to the proton doping-undoping process, suggesting that the nanowires hold great promise for sensitive chemical sensor applications.     

基于Au/SiO2纳米粒子的结晶紫表面增强拉曼特性研究

采用自组装-化学镀法制备了以SiO2为核,Au为壳层的核壳结构纳米粒子(Au/SiO2),以生物染色剂结晶紫为探针分子,研究了Au/SiO2的表面增强拉曼散射(SERS)效应,并考察了Cl-对SERS增强效应的影响。实验表明,Cl-对SERS有明显的增强效果,这主要是由于Cl-的加入使得Au/SiO2发生团聚,产生大量"热点",从而使SERS增强效果进一步加强。以Au/SiO2(5×1010 mL-1)为活性基底,KCl(0.01 mol/L)为额外增强剂,在水溶液中实现了对结晶紫(CV)的痕量检出,最低检测浓度可达到5×10-10mol/L。     

Conductive metal nanowires templated by the nucleoprotein filaments, complex of DNA and RecA protein

Development of preprogrammable conductive nanowires is a requisite for the future fabrication of nanoscale electronics based on molecular assembly. Here, we report the synthesis of conductive metal nanowires from nucleoprotein filaments, complexes of single- or double-stranded DNA and RecA protein. A genetically engineered RecA derivative possessing a reactive and surface accessible cysteine residue was reacted with functionalized gold particles, resulting in nucleoprotein filaments with gold particles attached. The template-based gold particles were enlarged by chemical deposition to form uniformly metallized nanowires. The programming information can be encoded in DNA sequences so that an intricate electrical circuit can be constructed through self-assembly of each component. As the RecA filament has higher degree of stiffness than double-stranded DNA, it provides a robust scaffold that allows us to fabricate more reliable and well-organized electrical circuitry at the nanoscale. Furthermore, the function of homologous pairing provides sequence-specific junction formation as well as sequence-specific patterning metallization.     

Development of ultra-high sensitive and selective electrochemiluminescent sensor for copper(II) ions: a novel strategy for modification of gold electrode using click chemistry

A promising and highly sensitive electrochemiluminescence (ECL) sensor for the detection of Cu(2+) based on Cu(+)-catalyzed click reaction is described in this paper. Firstly, 1-azidoundecan-11-thiol was assembled on the Au electrode surface via a simple thiol-Au reaction, then the propargyl-functionalized Ru(bpy)(3)(2+)-doped SiO(2) nanoparticles (Ru-SNPs) ECL probe was covalently coupled on the electrode surfaces via click chemistry. Cu(+), the catalyst for click chemistry, is derived from the electrolytic reduction of Cu(2+)via the Bulk Electrolysis with coulometry (BE) technique and without any reductants. It is found that the ECL intensity detected from the electrode surface has a linear relationship with the logarithm of Cu(2+) concentration in the range of 1.0 × 10(-15) to 1.0 × 10(-11) M with a detection limit of 1.0 × 10(-16) M. Also, the method is highly specific even in the presence of high concentrations of other metal cations. It has been applied to detect trace Cu(2+) in complex samples (hepatoma cell) without sample treatment.     

基于催化发卡自组装和 Ru(NH3)63+ 的核酸光电化学灵敏分析

基于催化发卡自组装反应（CHA）和电活性材料[Ru(NH₃)₆]Cl₃,发展了一种“信号增强”型光电化学生物传感器,实现了核酸的灵敏检测. 首先,采用逐层离子吸附法（SILAR）将CdS 固定于TiO₂/ITO 电极表面. 光电材料CdS 不仅能够将TiO₂ 的吸收范围从紫外光区拓展到可见光区,而且还能提高光电转换效率. 之后,通过Cd-S 键将捕获DNA（C-DNA）固定于CdS/ TiO₂/ITO 电极表面. 与此同时,将Au 结合的发卡DNA 探针1（Au-HP1）,发卡DNA 探针2（HP2）和目标DNA（T-DNA）混合物于溶液中进行CHA 反应,得到大量的Au-HP1:HP2 复合物. 再通过Au-HP1:HP2 复合物与C-DNA 的杂交反应将大量的双链DNA 引入到电极表面. 最后,将电活性物质Ru(NH₃)₆³⁺嵌入DNA 的磷酸骨架中,从而使得光电流大幅度的增强. 该光电生物传感器检测核酸的线性范围为10 fmol·L^-1 到 1500 fmol·L^-1,检测线为6.19 fmol·L^-1,在生物分析、新药筛选以及疾病的早期诊断等方面具有潜在的应用前景.     

Au nanowire-on-film SERRS sensor for ultrasensitive Hg2+ detection

We report an ultrasensitive and selective single nanowire-on-film (SNOF) surface-enhanced resonance Raman scattering (SERRS) sensor for Hg(2+) detection based on structure-switching double stranded DNAs (dsDNAs). Binding of Hg(2+) induces conformational changes of the dsDNAs and let a Raman reporter get close to the SNOF structure, thereby turning on SERRS signal. The well-defined SNOF structure provides a detection limit of 100 pM with improved accuracy in Hg(2+) detection. This sensor is stable over a considerable amount of time and reusable after simple treatment. Since this SNOF sensor is composed of a single Au NW on a film, development of a multiplex sensor would be possible by employing NWs modified by multiple kinds of aptamers.     

Solid-state electrochemiluminescence protein biosensor with aptamer substitution strategy

One solid-state electrochemiluminescence(ECL) protein biosensor based on the competing reaction and substitute reaction between protein-to-DNA aptamer and DNA-to-DNA aptamer was proposed.Additionally,the biosensor was based on ECL photo-quenching effect of ferrocene(Fc) to tris(2,2'-bipyridyl)ruthenium(II)(Ru(bpy)32+).It was built up by modification of Au nanoparticles(AuNPs) and Ru(bpy)3 2+ on one Au electrode firstly,and then self-assembly of one special double-stranded DNA(dsDNA) onto the electrode.This ...     

Electrochemical impedance spectroscopy and surface plasmon resonance studies of DNA hybridization on gold/SiOx interfaces

The use of Au/SiO(x) interfaces for the investigation of DNA hybridization using electrochemical impedance spectroscopy (EIS) and surface plasmon resonance (SPR) simultaneously is demonstrated. Standard glass chemistry was used to link single-stranded DNA (ss-DNA) on aldehyde-terminated Au/SiO(x) interfaces. The layer thickness and amount of grafted oligonucleotides (ODNs) were calculated from SPR on the basis of a multilayer system of glass/Ti/Au/SiO(x)/grafted molecule. Capacitance and resistance values of the modified interface before and after hybridization were calculated from EIS data using an equivalent circuit and allowed the affinity rate constant, K(A) = 4.07 x 10(5) M(-1), to be determined. The EIS results were comparable to those obtained by SPR hybridization kinetics recorded in parallel.     

非标记夹心式电化学可卡因适体传感器的研究

设计一种基于双链核酸适体的非标记夹心式电化学适体传感器, 建立简单、高灵敏度的可卡因分析方法. 首先将末端巯基修饰的捕获适体探针组装在金电极表面, 构建可卡因适体传感器. 该传感器与目标分子可卡因和部分互补的检测适体探针作用后, 在电极表面形成适体/可卡因/适体复合物. 以六氨合钌为信号分子, 基于单链适体和适体/可卡因/适体复合物对六氨合钌吸附量的不同, 通过计时电量法检测电极表面吸附六氨合钌的还原电量, 进行可卡因的分析检测. 在优化的条件下, 还原电量与可卡因浓度在1～50 mmol/L范围内呈良好的线性关系, 检出限为0.1 mmol/L. 用于血清中可卡因的检测, 回收率为96.4%～104%. 该方法简单, 灵敏度高, 可作为一种通用型的适体传感器模型.     

Preparation and catalytic performances of a molecularly imprinted Ru-complex catalyst with an NH2 binding site on a SiO2 surface

A catalyst surface with an active metal site, a shape-selective reaction space, and an NH(2) binding site for o-fluorobenzophenone was designed and prepared by the molecular imprinting of a supported metal complex on a SiO(2) surface. A ligand of a SiO(2)-supported Ru complex that has a similar shape to the product of o-fluorobenzophenone hydrogenation was used as a template. An NH(2) binding site for o-fluorobenzophenone was spatially arranged on the wall of a molecularly imprinted cavity with a similar shape to the template. The structures of the SiO(2)-supported and molecularly imprinted Ru catalysts were characterized in a step-by-step manner by means of solid-state magic angle spinning (MAS) NMR, XPS, UV/Vis, N(2) adsorption, XRF, and Ru K-edge EXAFS. The molecularly imprinted Ru catalyst exhibited excellent shape selectivity for the transfer hydrogenation of benzophenone derivatives. It was found that the NH(2) binding site on the wall of the molecularly imprinted cavity enhanced the adsorption of o-fluorobenzophenone, of which the reduction product was imprinted, whereas there was no positive effect in the case of o-methylbenzophenone, which cannot interact with the NH(2) binding site through hydrogen bonding.     

An ultra-sensitive DNA assay based on single-molecule detection coupled with hybridization accumulation and its application

An ultra-sensitive assay for quantification of DNA based on single-molecule detection coupled with hybridization accumulation was developed. In this assay, target DNA (tDNA) in solution was accumulated on a silanized substrate blocked with ethanolamine and bovine serum albumin (BSA) through a hybridization reaction between tDNA and capture DNA immobilized on the substrate. The tDNA on the substrate was labeled with quantum dots which had been modified with detection DNA and blocked with BSA. The fluorescence image of single QD-labeled tDNA molecules on the substrate was acquired using total internal reflection fluorescence microscopy. The tDNA was quantified by counting the bright dots on the image from the QDs. The limit of detection of the DNA assay was as low as 6.4 × 10(-18) mol L(-1). Due to the ultra-high sensitivity, the DNA assay was applied to measure the beta-2-microglobulin messenger RNA level in single human breast cancer cells without a need for PCR amplification.