An electron microscopic and enzymic study of rat liver peroxisomal nucleoid core and its association with urate oxidase

The appearance of the characteristic crystalloid core of rat liver peroxisomes is emulated by the electron microscopic (EM) appearance of highly purified urate oxidase prepared from the same tissue. The purity of the enzyme preparation was established by gel electrophoresis under various conditions and the specific enzyme activity was at least as high as any previously reported. The amino acid composition of urate oxidase was determined. As additional evidence for close association of the peroxisomal core with urate oxidase, it was demonstrated that the biphasic changes in rat liver urate oxidase activity in response to prolonged starvation were paralleled by changes in the EM appearance of peroxisomes. Under comparable conditions catalase, another peroxisomal enzyme, did not show the same changes in activity as did urate oxidase. Evidence for the possible identity of urate oxidase with the peroxisomal crystalloid of rat liver has been presented, all materials having been obtained from, and experiments performed with, the rat.     

Analysis of the bioactivity of magnetically immunoisolated peroxisomes

Peroxisomes produce reactive oxygen species which may participate in biotransformations of innate biomolecules and xenobiotics. Isolating functional peroxisomes with low levels of contaminants would be a useful tool to investigate biotransformations occurring in these organelles that are usually confounded with biotransformations occurring in other co-isolated organelles. Here, we immunoisolate peroxisomes and demonstrate that the impurity level after isolation is low and that peroxisomes retain their biological activity. In this method, an antibody targeting a 70-kDa peroxisomal membrane protein was immobilized to silanized magnetic iron oxide beads (1–4 μm in diameter) coated with Protein A. Peroxisomes from L6 rat myoblast homogenates were magnetically captured, washed, and then analyzed for subcellular composition using enzymatic assays. Based on the ratio of peroxisomal to lysosomal activity, the retained fraction is 70-fold enriched relative to the unretained fraction. Similarly, the ratio of peroxisomal activity to mitochondrial content suggests that the retained fraction is >30-fold enriched relative to the unretained fraction. H₂O₂ production from the β-oxidation of palmitoyl-CoA demonstrated that the isolated peroxisomal fraction was biologically active. Capillary electrophoresis with laser-induced fluorescence detection (CE-LIF) analysis confirmed that the immunopurified fractions were capable of transforming the anticancer drug doxorubicin and the fatty acid analog, BODIPY 500/510 C1C12. Besides its use to investigate peroxisome biotransformations in health and disease, the combination of magnetic immunoisolation with CE-LIF could be widely applicable to investigate subcellular-specific biotransformations of xenobiotics occurring at immunoisolated subcellular compartments.     

PHYTOCHROME-MEDIATED RAPID CHANGES IN THE LEVEL OF PHOSPHOINOSITIDES IN ETIOLATED LEAVES OF Zea mays

The role of the active form of phytochrome in Zea mays on the polyphosphoinositide cycle was studied. As little as 15 s of red irradiation of etiolated leaves immediately increased the level of phosphatidylinositol bisphosphate (PIP₂) 3–6-fold compared to unirradiated leaves. The elevated level of PIP₂ decreased with longer red irradiations up to 5 min, but remained higher than in unirradiated leaves. The level of PIP₂ decreased if red irradiation was followed by far-red irradiation. Far-red alone had no effect. Levels of phosphatidylinositol phosphate (PIP) and phosphatidylinositol did not change significantly. Since red irradiation significantly changed PIP, but not PIP, photocontrol appears to be at the PIP kinase and phospholipase level. In related studies of the effect of light on phospholipids, 5 min of red irradiation induced significant decreases in phosphatidylcholine and phosphatidylethanola-mine.     

Efficient separation and analysis of peroxisomal membrane proteins using free-flow isoelectric focusing

We have elaborated a protocol for the fractionation of both hydrophilic and hydrophobic proteins using as a model the matrix and membrane compartments of highly purified rat liver peroxisomes because of their distinct proteomes and characteristic composition with a high quota of basic proteins. To keep highly hydrophobic proteins in solution, an urea/thiourea/detergent mixture, as used in traditional gel-based isoelectric focusing (IEF), was added to the electrophoresis buffer. Electrophoresis was conducted in the ProTeam free-flow electrophoresis (FFE) apparatus of TECAN separating proteins into 96 fractions on a pH 3-12 gradient. Consecutive sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) analysis demonstrated that both matrix and the integral membrane proteins of peroxisomes could be successfully fractionated and then identified by mass spectrometry. This is documented by the detection of PMP22, which is the most hydrophobic and basic protein of the peroxisomal membrane with a pI > 10. The identification of 96 prominent spots corresponding to polypeptides with different physical and chemical properties, e.g., the most abundant integral membrane polypeptides of peroxisomes and specific ones of the mitochondrial and microsomal membrane, reflects the fractionation potential of free-flow (FF)-IEF, accentuating its value in proteomic research as an alternative perhaps superior to gel-based IEF.     

Presence of thiamine pyrophosphate in mammalian peroxisomes

Background

Thiamine pyrophosphate (TPP) is a cofactor for 2-hydroxyacyl-CoA lyase 1 (HACL1), a peroxisomal enzyme essential for the α-oxidation of phytanic acid and 2-hydroxy straight chain fatty acids. So far, HACL1 is the only known peroxisomal TPP-dependent enzyme in mammals. Little is known about the transport of metabolites and cofactors across the peroxisomal membrane and no peroxisomal thiamine or TPP carrier has been identified in mammals yet. This study was undertaken to get a better insight into these issues and to shed light on the role of TPP in peroxisomal metabolism.

Results

Because of the crucial role of the cofactor TPP, we reanalyzed its subcellular localization in rat liver. In addition to the known mitochondrial and cytosolic pools, we demonstrated, for the first time, that peroxisomes contain TPP (177 ± 2 pmol/mg protein). Subsequently, we verified whether TPP could be synthesized from its precursor thiamine, in situ, by a peroxisomal thiamine pyrophosphokinase (TPK). However, TPK activity was exclusively recovered in the cytosol.

Conclusion

Our results clearly indicate that mammalian peroxisomes do contain TPP but that no pyrophosphorylation of thiamine occurs in these organelles, implying that thiamine must enter the peroxisome already pyrophosphorylated. Consequently, TPP entry may depend on a specific transport system or, in a bound form, on HACL1 translocation.     

高效液相色谱法测定大鼠肝过氧化物酶体膜磷脂

 用 HPL C测定了过氧化物酶体膜磷脂的含量。用 Folch法提取膜脂质 ,以 μ-Porasil Si60为固定相 ,以乙腈-甲醇 -磷酸为流动相 ,采用梯度洗脱 ,紫外检测波长 2 0 5 nm。标准回收率 :心磷脂 (C)为 (1 0 3 .97± 1 2 .5 7) % ,磷脂酰肌醇 (PI)为 (88.2 3± 5 .42 ) % ,磷脂酰丝氨酸 (PS)为 (90 .3 3± 6.84) % ,磷脂酰乙醇胺 (PE)为 (84.41±1 0 .2 2 ) % ,磷脂酰胆碱 (PC)为 (89.78± 8.70 ) % ,鞘磷脂 (SM)为 (84.0 4± 1 2 .0 6) %。最小检出限分别为 :C1 2ng,PI 8ng,PS 2 3 ng,PE 4ng,PC 2 3 ng,SM 7ng。线性关系与回收率较好 ,结果令人满意。     

COMPARATIVE ANALYSES OF ACTION SPECTRA OF GLYCOLATE EXCRETION ("PHOTORESPIRATION") AND PHOTOSYNTHESIS IN THE BLUE-GREEN ALGA AN ACYSTIS NIDULANS

Abstract. The action spectra were determined by measuring photosynthetic H¹⁴CO^-₃-fixation and ¹⁴C-glycolate excretion to the medium during 15 min exposure to light at 15 different wavelengths in the visible region using interference filters and a 2500 W high pressure Xe lamp at a constant photon flux of about 1.51 × 10¹⁹ quanta m^-2.s^-1 at all wavelengths.
When plotted on relative scales the action spectrum of glycolate excretion lies below that of photosynthesis at all wavelengths shorter than 517 nm. As glycolate excretion had an exponential relationship to photosynthetic rates, different methods were used to analyze for a specific blue light effect which demonstrated that the relative amount of glycolate excretion was depressed by blue light compared with that by green and red. The greatest difference was observed around 460–480 nm. However, on statistical grounds it is not permitted to draw a difference spectrum which might indicate the absorption characteristics of pigment(s) involved.
A hypothesis is discussed assuming that some glycolate is consumed in an oxidation process for supply of electrons to Photosystem I when Photosystem II is poorly excited in the blue region of the spectrum, which was the case for Anacystis used in the present investigation.     

GENETIC AND PHYSIOLOGICAL STUDIES OF THE EFFECT OF LIGHT ON THE DEVELOPMENT OF THE MOSS, PHYSCOMITRELLA PATENS

The germination of Physcomitrella patens spores only occurs when wet spores are exposed to light. Depending on their ripeness, spores require from 44 to 64 h illumination to bring about maximum germination. There is a lag period of about 15 h between the reception of sufficient light to elicit germination before germination can be observed. Wavelengths in the range 640–64080 nm are much more effective in inducing germination than longer or shorter wavelengths, but far-red reversal of red light induction of germination has not been demonstrated. Light also has very marked effects on protonemal and gametophore development. In darkness, only caulonemata are produced, and these grow negatively geotropically. No new gametophores develop but existing gametophores grow negatively geotropically, etiolate and bear only scale leaves. In light, chloronemata, as well as caulonemata are produced, the former grow positively phototropically, while the latter grow at right angles to the direction of light, and neither cell type is sensitive to gravity. In the light, gametophores grow positively phototropically, are indifferent to gravity, produce large leaves and do not etiolate. All these responses to light by protonemata and gametophores are shown by cultures growing in a 23 h dark/l h red light cycle, but if this red light treatment is followed by 15min far-red light, the effect of the red light is reversed, indicating an involvement of phytochrome in the mediation of these responses. Mutants showing abnormal growth in the dark have been isolated, as well as mutants having abnormal phototropic responses. The latter type has lost the phototropic response of both the protonemal cell types, as well as of gametophores, indicating that these different responses may share a common component.     

Intracellular fate of hydrocarbons

In previous work, purification procedures and zymogram analysis conducted with supernatants of crude extracts from aerobic mycelium of the YR-1 strain of Mucor circinelloides isolated from petroleum-contaminated soils indicated the existence of only one soluble alcohol oxidase (sAO) activity. In the present work enzymatic activity of alcohol oxidase (AO) was also detected in the mixed membrane fraction (MMF) of a high-speed centrifugation procedure after drastic ballistic cellular homogenization to break the mycelium from strain YR-1. When mycelial cells were gently broken by freezing the mycelium with liquid nitrogen, smashing in a mortar, and submitting the samples to an isopycnic sucrose gradients (10–60% sucrose), AO activity was detected in particular and discrete fractions of the gradient, showing specific density values quite different from the density of peroxisomes. The results suggest that there could be a different intracellular pattern of distribution of the microsomal fraction in aerobically grown mycelium depending on the carbon source used in the culture media, including alcohols and hydrocarbons, but not in glucose. In working with particulate fractions, we found two AO activities: a new membrane alcohol oxidase (mAO) activity and the sAO. Both activities appear to be located in the inner of the cells in specific compartments different from the peroxisomes, so mAO could be in the membrane of these compartments and sAO in the lumen of the vesicles. We also assayed other enzymatic activities involved in hydrocarbon biodegradation to establish its intracellular location and other enzymatic activities such as peroxidase to use them as intracellular markers of different organelles. In the case of monooxygenase, the first enzymatic step in the hydrocarbon biodegradation pathway, its location was in the same fractions where AOs were located, suggesting the existance of a specific organelle that contains the enzymatic activities involved in hydrocarbon biodegradation.     

IMPAIRMENT OF RED CELL MEMBRANE CYTOSKELETON BY PROTOPORPHYRIN-IX: LIGHT AND DARK EFFECTS

Abstract— Membrane cytoskeletons were separated by use of TritonX–100 from freshly isolated red cells, fixed with glutaraldehyde and their morphology was followed by scanning electron microscopy. At 37°C and pH 6.5 cytoskeletons retained cell-like shapes for at least 2 h, but at higher pH values, they lost stability after 30 min, appearing as amorphous protein material. Irradiation in the presence of1–20 μ M protoporphyrin-IX at pH 6.5 caused crosslinking of the proteins when organized as cytoskeletons, but not when separated. Scanning electron microscopy also revealed that the cytoskeletal proteins conserved their cell-like shape even at pH values higher than 7.0. It was concluded that illumination in the presence of porphyrin causes membrane rigidity by crosslinking of the cytoskeletal proteins, and their sensitivity to crosslinking is the result of their mutual arrangement in the membrane. At concentrations higher than 100 μ M protoporphyrin-IX induced, even in the absence of light, the opposite effect, namely dissociation of the cytoskeletal proteins. The data suggest that the changes observed in this study provide an explanation for both dark and light induced injuries of red cells in porphyria disorders.     

Hypoxanthine sensor based on an amorphous silicon field-effect transistor

The pH response of an a-ISFET with xanthine oxidase immobilized on a ca. 20-μm thick poly(vinyl butyral) membrane over the gate insulator, is used to detect the uric acid produced by enzyme-catalyzed oxidation of hypoxanthine. The pH sensitivity between pH 5.0 and 10.0 is ca 48 mV/pH at 32°C in 10 mM phosphate buffer. The change in the output gate voltage 1 min after sample injection, is linearly related to the logarithm of the hypoxanthine concentration in the range 0.02–0.1 mM. The optimum buffer pH is 7.5. The system can be used for 2 weeks with 30% loss of enzymatic activity.     

Studies on the oxygen atom transfer reactions of peroxomonosulfate: Oxidation of glycolic acid

The kinetics of oxidation of glycolic acid, an α‐hydroxy acid, by peroxomonosulfate (PMS) was studied in the presence of Ni(II) and Cu(II) ions and in acidic pH range 4.05–5.89. The metal glycolate, not the glycolic acid (GLYCA), is oxidized by PMS. The rate is first order in [PMS] and metal ion concentrations. The oxidation of nickel glycolate is zero‐order in [GLYCA] and inverse first order in [H⁺]. The increase of [GLYCA] decreases the rate in copper glycolate, and the rate constants initially increase and then remain constant with pH. The results suggest that the metal glycolate ML⁺ reacts with PMS through a metal‐peroxide intermediate, which transforms slowly into a hydroperoxide intermediate by the oxygen atom transfer to hydroxyl group of the chelated GLYCA. The effect of hydrogen ion concentrations on k_obs suggests that the structure of the metal‐peroxide intermediates may be different in Ni(II) and Cu(II) glycolates. © 2008 Wiley Periodicals, Inc. Int J Chem Kinet 41: 160–167, 2009     

A catechol electrode based on spinach leaves

Minced spinach leaf (Spinacea oleracea) has a high activity of catechol oxidase (dimerizing) (EC 1.1.3.14), which is utilized for the determination of catechol by coupling the spinach tissue with a Clark oxygen electrode. The calibration graph for catechol is linear over the range 2×10^?5–8×10^?4 M (RSD 3%). The sensor retains its enzyme activity for at least 18 days. 4-Methylcatechol and glycolate interfere; glucose and ascorbate do not.     

Light Might Directly Affect Retinal Ganglion Cell Mitochondria to Potentially Influence Function†

Visible light (360–760 nm) entering the eye impinges on the many ganglion cell mitochondria in the non‐myelinated part of their axons. The same light also disrupts isolated mitochondrial function in vitro and kills cells in culture with the blue light component being particularly lethal whereas red light has little effect. Significantly, a defined light insult only affects the survival of fibroblasts in vitro that contain functional mitochondria supporting the view that mitochondrial photosensitizers are influenced by light. Moreover, a blue light insult to cells in culture causes a change in mitochondrial structure and membrane potential and results in a release of cytochrome c. Blue light also causes an alteration in mitochondria located components of the OXPHOS (oxidative phosphorylation system). Complexes III and IV as well as complex V are significantly upregulated whereas complexes I and II are slightly but significantly up‐ and downregulated, respectively. Also, blue light causes Dexras1 and reactive oxygen species to be upregulated and for mitochondrial located apoptosis‐inducing factor to be activated. A blue light detrimental insult to cells in culture does not involve the activation of caspases but is known to be attenuated by necrostatin‐1, typical of a death mechanism named necroptosis.     

Biochemistry of the peroxisome in the liver cell

The marker enzyme of the peroxisome—a phylogenetically old yet only recently discovered cell organelle—is catalase, a hemoprotein which decomposes hydrogen peroxide catalatically as well as peroxidatically. In the peroxisomes, catalase is associated with H₂O₂-producing oxidases and other enzymes. Also in parenchymal cells such as liver and kidney cells part of the reduction of oxygen occurs via formation of H₂O₂. A central role in peroxisomal H₂O₂-metabolism is played by the active intermediate, catalase-Fe³⁺-H₂O₂, (Compound I), which is distinguished from free catalase by specific absorption bands. Organ photometry on intact hemoglobin-free perfused rat liver in order to measure Compound I selectively provides a direct insight into the dynamics of the H₂O₂ metabolism which takes place in the range of nanomolar concentrations. Endogenously, 1g of liver forms approximately 50 nmol of H₂O₂ per min. The turnover number, which in the steady state is < 10 min^?1 in the cell as compared to > 10⁸ min^?1 for the isolated enzyme with an excess of substrate, can be increased to approximately 10² min^?1 by intracellular stimulation of the H₂O₂ production (e.g. by glycolate or urate). The peroxidatic oxidation of hydrogen donors (e.g. methanol and ethanol), favored relative to the catalase pathway at low turnover numbers, is of importance in normal metabolism and in pathological conditions.     

Bilirubin-sensitized photoinactivation of enzymes in the isolated membrane of the human erythrocyte.

Abstract— Bilirubin has been found to sensitize the photodynamic inactivation of several enzymes in the isolated membrane (ghost) of the human red cell. When ghosts (pH 8.0, 10°C) + bilirubin (0.1 mM) were irradiated with blue light (350 Wm^-2), the activity of glyceraldehyde 3-phosphate dehydrogenase decayed with t_1/2? 15 min. No effect was observed in the absence of pigment or with incident yellow light. Diazabicyclo-octane (DABCO) sharply reduced the inactivation rate, suggesting that ¹O₂ is involved. Sodium dodecyl sulfate-gel electrophoresis of ghosts containing fully inactivated glyceraldehyde 3-phosphate dehydrogenase revealed no change in the polypeptide band corresponding to the subunit of the enzyme. Solubilized enzyme, which was similarly photosensitive, could be partially protected by nicotinamide adenine dinucleotide or glyceraldehyde 3-phosphate. The integral enzymes Mg²⁺-ATPase, Na⁺, K⁺-ATPase, and acetylcholinesterase were also affected. Under the above conditions and bilirubin = 0.37 mM, these enzymes were photoinactivated in first-order fashion, k? 2, 1.2 and 0.2 h^-1, respectively. The rate of decay of total ATPase was found to vary as the square root of the bilirubin concentration over the range 7–370 μM. At a fixed bilirubin concentration (0.37 mM), this rate was also shown to be directly proportional to light intensity. Inasmuch as the —SH content of bilirubin-containing ghosts diminished during irradiation, oxidation of essential cysteine residues could be responsible for the inactivation of some of the enzymes studied.     

BLUE LIGHT PERCEPTION BY ENDOGENOUS REDOX COMPONENTS OF THE PLANT PLASMA MEMBRANE

b-Type cytochromes of the higher plant plasma membrane may be reduced by irradiation with actinic blue light (light-induced absorbance change). Although this reaction has been reported to depend on the presence of an exogenous oxygen-scavenging system, significant cytochrome reduction was obtained in bean hook (Phaseolus vulgaris L. cv. “Limburgse Vroege”) plasma membranes without any addition. An endogenous oxygen-consuming reaction is apparently sufficient to achieve a proper redox balance. A blue light-mediated absorbance change with absorbance minima at 450 and 475 nm precedes cytochrome b reduction and indicates the presence of a flavoprotein in the plasma membrane fraction. Cytochrome b reduction by blue light in the absence of an oxygen scavenger is highly sensitive to flavin photosensitizers. Glucose oxidase, which has previously been used to lower the oxygen concentration in membrane samples, was demonstrated to have a photosensitizing effect. Inhibitors of flavin photochemical reactions (KI and phenylacetic acid) were highly effective in preventing cytochrome b reduction. These results indicate that the blue light-mediated reaction probably involves an endogenous plasma membrane flavoprotein as the photoreceptor. As plasma membrane NADH-dependent oxidoreductases potentially are flavoproteins these experiments raise the question whether a plasma membrane cytochrome b and a flavin-enzyme may cooperate in blue light reactions. Evidence is also discussed, suggesting the possible involvement of oxygen radicals in the blue light-induced cytochrome b reduction.     

Mediated amperometric biosensors for d-galactose,glycolate and l-amino acids based on a ferrocene-modified carbon paste electrode

Direct-current cyclic voltammetry is used to investigate the suitability of a ferrocene derivative as a mediator with galactose, glycolate and l-amino acid oxidases. The three enzymes coupled catalytically to ferrocene monocarboxylic acid exhibiting homogeneous second-order rate constants in the range 0.4 × 10⁵ to 8.5 × 10⁵ l mol^?1 s^?1. Enzyme electrodes which responded to d-galactose, glycolate or l-amino acids were constructed. The appropriate oxidase was retained behind a dialysis membrane at a carbon paste electrode containing the poorly soluble derivative 1,1′-dimethylferrocene. All the electrodes responded rapidly to millimolar concentrations of their respective substrates producing 95% of the steady-state current response in <2 min. This general method of biosensor construction should be widely applicable to oxidases and other oxidoreductase enzymes.     

Determination of cholesterol with a microporous membrane chemiluminescence cell with cholesterol oxidase in solution

A reagent solution, containing cholesterol oxidase buffered at pH 7, is contained in a pressurized reservoir and forced through a microporous membrane at 2–5 μl min^?1 into a stream flowing at 2–10 ml min^?1 which contains injected slugs of cholesterol as the analyte. The hydrogen peroxide produced then reacts with luminol in pH 9.0 Tris buffer, catalyzed by horseradish peroxidase, to produce chemiluminescence, the intensity of which is related to the cholesterol concentration. The working range is 0.4–40 mg dl^?1; precision is 1–4% over this range. The detection limit is 0.2 mg dl^?1 or 5 μM. Sample throughput is 60 h^?1, and only 0.01 unit of enzyme is consumed per sample. Blood serum samples may be analyzed for either free or total cholesterol by using standard addition and pre-treatment with Somogyi reagents for removal of reducing species.     

A Tin Oxide Transparent Electrode Provides the Means for Rapid Time‐resolved pH Measurements: Application to Photoinduced Proton Transfer of Bacteriorhodopsin and Proteorhodopsin†

An electrochemical cell was previously reported in which bacteriorhodopsin (BR, purple membrane) was adsorbed on the surface of a transparent SnO₂ electrode, and illumination resulted in potential or current changes (Koyama et al., Science 265:762–765, 1994; Robertson and Lukashev, Biophys. J. 68:1507–1517, 1995; Koyama et al., Photochem. Photobiol. 68:400–406, 1998). In this paper, we concluded that pH changes caused by proton transfer by the deposited BR or proteorhodopsin (PR) films lead to the flash‐induced potential change in the SnO₂ electrode. Thus, the signals originate from BR and PR acting as light‐driven proton pumps. This conclusion was drawn from the following observations. (1) The relation between the potential of a bare electrode and pH is linear for a wide pH range. (2) The flash‐induced potential changes decrease with an increase in the buffer concentration. (3) The action spectrum of PR agrees well with the absorption spectrum. (4) The present electrode can monitor the pH change in the time range from 10 ms to several hundred milliseconds, as deduced by comparing the SnO₂ signal with the signals of pH‐sensitive dyes. Using this electrode system, flash‐induced proton transfer by BR was measured for a wide pH range from 2 to 10. From these data, we reconfirmed various pK_a values reported previously, indicating that the present method can give the correct pK_a values. This is the first report to estimate these pK_a values directly from the proton transfer. We then applied this method to flash‐induced proton transfer of PR. We observed proton uptake followed by release for the pH range from 4 to 9.5, and in other pH ranges, proton release followed by uptake was observed.