应用前沿亲和色谱研究分子间相互作用及其应用

分子间的相互作用是一切生物或化学变化的基础。前沿亲和色谱作为通用性的研究分子间相互作用力的工具,利用它可得到分子之间相应的解离常数Kd,并可对各种配体的亲和力大小进行排序。本文介绍了前沿亲和色谱的工作原理、前沿亲和色谱柱的构建,以及在药物筛选、生物相关领域的应用。与其他研究分子间相互作用的技术做了相应的比较。     

Hummel-Dreyer法在生物分子相互作用分析中的应用

生物分子间的相互作用具有高度的专一性、目的性和有效性。分析平衡条件下这些相互作用的参数对于了解生物分子的结构特征和作用机制具有重要的意义。近年来发展起来的定量亲和色谱方法由于准确度高、重现性好、易于自动化而备受关注。Hunmael—Dreyer(HD)法是基于色谱分离生物大分子复合物和配体的一种测定结合参数的方法。与其他方法比较,HD法的特点是在整个分析过程中,配体的浓度保持不变,因此可以同时对高亲和性和低亲和性的相互作用进行定量分析。此外,该方法还可测定多种配体与同一大分子的相互作用常数。本文对方法的原理和近年来的应用进展作了简单的介绍。     

取代硼酸与羟乙基胺化合物间的相互作用研究

取代硼酸与顺式二羟基化合物间的可逆的共价相互作用为糖蛋白和糖等重要生物分子的识别和分离提供了独特的亲和作用.为了获得良好的选择性,以β-激动剂与β-阻断剂这两类典型的羟乙基胺化合物为研究对象,利用核磁共振和高效液相色谱研究了它们与苯硼酸间的相互作用.研究结果表明,在高pH值条件下,羟乙基胺化合物与苯硼酸间存在强亲和作用,而在低pH值条件下,该亲和作用变弱甚至消失.这种pH值调控的相互作用表观上与顺式二羟基和苯硼酸间的硼亲和作用很相似.但是,与硼亲和作用机理不同,质子化溶剂的存在能加强这种相互作用,而非质子化溶剂的存在会破坏相互作用.本研究为深入认识硼亲和作用和获得可靠的应用提供了新依据,同时也为利用取代硼酸和羟乙基胺化合物之间的相互作用奠定了基础.     

色谱技术在药物-血浆蛋白相互作用研究中的应用进展

小分子药物进入人体血液循环系统后与人血清白蛋白(HSA)、α₁ -酸性糖蛋白(AGP)等血浆蛋白存在广泛的相互作用,这些相互作用深刻影响药物在体内的分布及其与靶标蛋白的结合,进而影响药物效应的发挥。深入探究药物与血浆蛋白间的相互作用对于候选药物的成药性优化、新药研发、联合用药的风险评控等意义重大。而发展高效、灵敏、准确的分析检测方法是开展药物-血浆蛋白相互作用研究的关键。近年来,色谱技术由于其高通量、高分离性能、高灵敏度等特点在该领域得到了广泛的应用,包括测定血浆蛋白翻译后修饰对药物结合的影响,多种药物的竞争性结合等。其中,高效亲和色谱(HPAC)和毛细管电泳(CE)应用最为广泛,能够通过多种分析方法获取结合常数、结合位点数、解离速率常数等相互作用信息。该文着重综述了HPAC和CE在药物-血浆蛋白相互作用研究中的常用策略及最新研究进展,包括HPAC中常用的前沿色谱法、竞争洗脱法、超快亲和提取法、峰值分析法和峰衰减分析法,以及CE中常用的亲和毛细管电泳法(ACE)和毛细管电泳前沿分析法(CE-FA)等。最后,该文还对当前色谱方法存在的不足进行了总结,并对色谱技术在药物-血浆蛋白相互作用研究领域的应用前景和发展方向进行了展望。     

生物分子溶液中的弱相互作用研究进展

弱相互作用是生物分子体系中普遍存在的一类重要作用,在分子组装和分子识别以及研究结构-功能-活性关系等方面有着极其重要的作用,一直是科学研究的前沿,本文从生物分子内弱相互作用的分类和研究方法方面,针对国内国际研究的前沿和热点以及笔者自身的科研成果,揭示了生物分子溶液内部弱相互作用的特点及其多元的研究手段.     

亲和毛细管电泳技术在蛋白质-DNA相互作用研究中的应用

蛋白质-DNA的相互作用在决定细胞命运的许多过程中发挥重要作用,对蛋白质-DNA相互作用的分子机制研究有利于对基本生命过程的理解,为相关疾病的临床治疗及药物筛选提供理论指导。另一方面,利用一些已知的蛋白质-DNA相互作用可以帮助开发先进的生物工程和生命分析技术,为相关研究提供有力的技术支持。因此,建立灵敏、快速的分析方法用于表征蛋白质-DNA的相互作用十分重要。高效毛细管电泳（capillary electrophoresis,CE）技术因其超高的分离效率、极低的样品消耗与较短的分析时间等优势被广泛应用于化学、生命科学和环境科学等多个研究领域。其中,亲和毛细管电泳（affinity capillary electrophoresis,ACE）技术已经成为考察分子间相互作用的重要研究工具。这篇文章综述了亲和毛细管电泳技术自建立以来在蛋白质-DNA相互作用分析方面的研究进展,并对经典的研究工作进行了着重介绍,主要包括三方面的内容：（1）亲和毛细管电泳技术简介;（2）利用亲和毛细管电泳技术进行蛋白质-DNA相互作用的基础分子机制研究;（3）利用已知的蛋白质-DNA相互作用发展针对目标分子及目标反应的亲和毛细管电泳检测技术。本文还对该领域的未来发展趋势进行了展望与探讨,提出应从以下两个方面增强亲和毛细管电泳技术的分析能力：（1）充分发挥CE技术样品消耗少和高通量等优势,分别发展针对少量珍贵生物样品的高灵敏检测方法和针对大量未知因素的高通量筛选方法;（2）结合DNA测序及质谱技术快速筛选、鉴定未知的蛋白质-DNA相互作用的精确靶点。     

基于原子力显微镜的单分子力谱在生物研究中的应用

原子力显微镜被广泛应用于生物研究领域,基于原子力显微镜的单分子力谱可以在单分子、单细胞水平上研究生物分子内和分子间的相互作用。 本文介绍了原子力显微镜单分子力谱在生物分子间相互作用、蛋白质去折叠、细胞表面生物分子、细胞力学性质和基于单分子力谱成像等研究中的最新进展。     

亲和毛细管电泳激光诱导荧光法测定牛血清白蛋白与其单克隆抗体的结合常数

生物分子之间的特异性相互作用是生物界普遍存在的现象．研究这些现象,对揭示生物化学作用机理、药物研究等具有重要意义．结合常数Ｋｂ是描述生物分子之间特异性相互作用最主要的参数,测定结合常数的传统方法包括平衡透析、凝胶过滤色谱和分光光度法等［１］．亲和毛细管电泳（Ａｆｆｉｎｉｔｙｃａｐｉｌｌａｒｙｅｌｅｃｔｒｏｐｈｏｒｅｓｉｓ,简称ＡＣＥ）是近几年发展起来的毛细管电泳的一个分支,在研究生物分子之间特异性相互作用等方面有很好的应用前景［２～５］．与上述传统方法相比,ＡＣＥ具有测定速度快,样品用量少,有多…     

3,4,5-三羟基苯甲酸二聚体氢键结构性质

分子间相互作用在生物和材料等科学中发挥着关键作用,研究分子间相互作用的本质意义重大。氢键是分子间相互作用的一种主要形式,在确定分子构象和晶体结构以及生物分子尤其是核酸和蛋白质的结构功能中起着重要作用[1-3]。苯甲酸衍生物广泛存在于生物大分子内,与生物活性离子通过氢键作用等改变生物活性分子的活性功能,研究苯甲酸衍生物分子间氢键相互作用对于了解生物体内的化学现象具有重要意义。研究表明菱角的抗肿瘤作用明显,实验上已经从菱角中成功提取了活性单体化合物:3,4,5-三羟基苯甲酸二聚体[4],理论研究标题化合物的氢键结构与氢…     

超临界流体色谱的研究进展

超临界流体色谱作为气相色谱和液相色谱的有力补充可用于热不稳定和低挥发性物质的分析分离和制备,也可用于超临界流体中分子间相互作用的研究。本文从色谱的流动相、固定相、检测系统及应用几方面综述了超临界流体色谱近年来的研究进展。     

Display cloning: functional identification of natural product receptors using cDNA-phage display.

BACKGROUND: The identification of cellular targets has traditionally been the starting point for natural product mode of action studies and has led to the understanding of many biological processes. Conventional experimental approaches have depended on cell-based screening and/or affinity chromatography. Although both of these techniques aid in the discovery of protein cellular targets, a method that couples protein identification with gene isolation would be extremely valuable. RESULTS: A procedure for the direct cloning of cellular proteins, based on their affinity for natural products, using cDNA phage display has been developed. The technique is referred to as display cloning because it involves the cloning of proteins displayed on the surface of a bacteriophage particle. The approach has been established by isolating a full-length gene clone of FKBP12 (FK506-binding protein) from a human brain cDNA library using a biotinylated FK506 probe molecule. During the affinity selection, the FKBP12 gene emerged as the dominant library member and was the only sequence identified after the second round of selection. CONCLUSIONS: The development of display cloning greatly facilitates the investigation of ligand-receptor interaction biology and natural product mode of action studies. This procedure utilizes heterologous protein display on infectious phage, which allows the amplification and repeated selection of putative sequences, leading to unambiguous target identification. In addition, the direct connection of a functional protein to its gene sequence eliminates the subsequent cloning step required with tissue homogenate or cell lysate affinity methods, allowing direct isolation of an expressible gene sequence.     

中药小分子阿魏酸和丹皮酚与人血清白蛋白的竞争结合作用研究

用亲和色谱研究了两种中药小分子阿魏酸(FA)、丹皮酚(PAE)在人体生理条件缓冲溶液(pH7.4)条件下与人血清白蛋白(HSA)的相互作用.从药物分子在蛋白质分子上有多种类型相互独立的结合位点的假定出发,应用Langmuir吸附模型和竞争置换分析研究了FA,PAE与HSA的竞争性相互作用.结果表明,FA,PAE与HSA之间存在一类位点,且FA与PAE竞争HSA上的indole位点(siteⅡ).根据热力学参数推测出FA,PAE与HSA之间的作用力主要为氢键作用.从FA,PAE竞争HSA上同一位点的角度,对中医用药中常将含有FA与含有PAE的中药配伍使用,以提高疗效的临床用药现象进行了解释.     

Experiments on moving interaction boundaries and their characteristics of focusing and probing of both guest and host target molecules

In this paper, the concept of a moving interaction boundary (MIB) is proposed with regard to guest and host molecules. With 2-naphthalene-sulfonate (2-NS) and β-cyclodextrin (CD) as the model guest and host compounds, respectively, the relevant experiments were carried out on the MIB in capillary electrophoresis (CE). The experiments show that (1) there are a MIB and a complex boundary (CB) if proper guest and host molecules are used; (2) the MIB system has the characteristic of selective focusing and probing of the target 2-NS; (3) the system also has the characteristic of selective probing of the target host molecule β-CD without UV-absorbance, making the direct UV determination of β-CD from other CDs possible; (4) interestingly, the focusing of the guest molecule is a kind of leaky-sample stacking rather than a collection of analytes in sample sweeping; (5) the mechanism of MIB-induced separation of target analyte from unwanted ones is similar to but different from that of an affinity chromatography. In addition, the utility of MIB was briefly tested for a real sample of wastewater spiked with 2-NS.     

Current development of analytical affinity chromatography: Design and biotechnological uses of molecular recognition surfaces

Analytical high performance liquid affinity chromatography (analytical HPLAC) has been investigated as an experimental guide to both synthetic design and affinity technological use of peptide and protein recognition surfaces. This work has progressed from the ongoing use of analytical affinity chromatography to study interaction mechanisms of naturally-occurring peptides and proteins, including enzyme fragment complexes and neuroendocrine biosynthetic precursors. We recently initiated a study to use analytical HPLAC for de novo design of recognition peptides called “anti-sense peptides”. Present data suggest the potential to use anti-sense peptides as “synthetic antibodies”, in immobilized forms, for biomolecular separation and analysis. Analogous studies have been started with immobilized natural antibodies in analytical immuno HPLAC. Our present data typify the growing usefulness of analytical HPLAC when designing recognition molecules, analyzing their interaction characteristics, and devising ways to use them in affinity technology.     

磷酸化肽段分离富集方法研究进展

目前磷酸化肽段鉴定主要依赖于质谱技术,但磷酸化肽段的低丰度性以及来自非磷酸化肽段的干扰等因素,影响质谱的分析与鉴定。因此质谱分析前磷酸化肽段的富集,是深入研究磷酸化蛋白质组学的先决条件。该文介绍了磷酸化蛋白质组学中传统的以及新建立的一些磷酸化肽段分离富集方法的原理及优缺点,这些方法包括固相金属离子亲和色谱法(IMAC)、金属氧化亲和色谱法(MOAC)、强阳/阴离子交换色谱法(SCX/SAX)、亲水相互作用色谱法(HILIC)、静电排斥亲水相互作用色谱法(ERLIC)、化学衍生法、MALDI靶盘富集法以及多种富集方法相结合。     

Application of retention factors in affinity electrokinetic chromatography and capillary electrophoresis.

Affinity capillary electrophoresis has become an established approach for performing interaction studies. In affinity electrokinetic chromatography the retention factor, as in liquid chromatography, is useful for describing the migration behavior of the analytes, and is instrumental for assessing the affinity of an analyte for the pseudo-stationary phase. Erroneous use of the retention factor concept in affinity capillary electrophoretic studies has appeared in a number of recent papers. The errors and their origin are pointed out, and the correct use of retention factors in affinity electrokinetic chromatography and capillary electrophoresis is summarized.     

膜亲和色谱的现状、发展和应用

文章对膜亲和色谱的原理、特点、设备、过程和发展情况做了介绍，并对亲和膜在整个膜分离技术中的地位、所占的比重及市场预测做了述评，对膜亲和色谱与其它色谱分离技术的优缺点进行了比较。重点介绍了制备亲和膜的材料，活化方法，间隔臂和配基的种类、选择和共价键合方法，配基和配合物产生亲和作用的机理及解离过程和方法。并对膜亲和色谱在酶、蛋白质、核糖核酸等生物大分子纯化分离方面的应用情况做了述评。     

计算机辅助筛选酪氨酸激酶相关蛋白TRP-2 CTL模拟表位

运用多项式方案、量化基序方案等经典的CTL表位筛选方案, 初步筛选了酪氨酸激酶相关蛋白TRP-2 CTL表位TRP-2_180～188 (SVYDFFVWL)的模拟表位, 以通过表位改造提高其与HLA-A2.1分子结合的能力, 从而提高其免疫原性. 根据打分结果, 合成了4个得分较高的九肽序列, 亲和力实验结果表明所筛选的4个序列较原序列均有较高的亲和力, 但对2位的单突变结果较1和2位双突变结果理想, 进一步运用分子模拟方法对4个序列与HLA-A2.1分子间的相互作用进行了分子模拟分析, 分子模拟结果较好地解释了上述实验现象, 从而为进一步的结构改造提供了理论依据. 本研究提供了一个合理高效的模拟表位筛选方法.     

Evaluation of a glucose sensing antibody using weak affinity chromatography

Continuous monitoring of drug levels and endogenous molecules in biological fluids is a developing research area with many applications. One example is the need to improve life for millions of diabetes mellitus patients by continuously monitoring the glucose level. In order to have a dynamic response, the recognition molecule in a continuous sensor should preferentially have a fast dissociation rate and a dissociation constant in the millimolar range. We have evaluated the monoclonal antibody (mAb) 3F1E8-A2 for its potential to be used in a future glucose sensor application. The mAb was generated from hybridomas by immunizing mice with 10 kDa dextran (an alpha1,6-glucose polymer) with the aim of obtaining mAbs that can recognize the glucose monomer. The mAb was immobilized to macroporous silica and the interaction with dextran-derived oligosaccharides was evaluated with weak affinity chromatography (WAC). To measure the low affinities between the mAb 3F1E8-A2 and different monosaccharides, a competitive weak affinity chromatography approach was employed. It was found that the mAb had a higher specificity for glucose compared with other monosaccharides and the dissociation constant (K(d)) towards glucose was determined as 18.8 +/- 2.6 mm.     

Chromatographic behavior of IgM:DNA complexes

This study documents the presence of stable complexes between monoclonal IgM and genomic DNA in freshly harvested mammalian cell culture supernatants. 75% of the complex population elutes from size exclusion chromatography with the same retention volume as IgM. DNA comprises 24% of the complex mass, corresponding to an average of 347 base pairs per IgM molecule, distributed among fragments smaller than about 115 base pairs. Electrostatic interactions appear to provide most of the binding energy, with secondary stabilization by hydrogen bonding and metal affinity. DNA-dominant complexes are unretained by bioaffinity chromatography, while IgM-dominant complexes are retained and coelute with IgM. DNA-dominant complexes are repelled from cation exchangers, while IgM-dominant complexes are retained and partially dissociated. Partially dissociated forms elute in order of decreasing DNA content. The same pattern is observed with hydrophobic interaction chromatography. All complex compositions bind to anion exchangers and elute in order of increasing DNA content. A porous particle anion exchanger was unable to dissociate DNA from IgM. Monolithic anion exchangers, offering up to 15-fold higher charge density, achieved nearly complete complex dissociation. The charge-dense monolith surface appears to outcompete IgM for the DNA. Monoliths also exhibit more than double the IgM dynamic binding capacity of the porous particle anion exchanger, apparently due to better surface accessibility and more efficient mass transfer.