Melting mechanism of monolayers adsorbed in cylindrical pores: the influence of the pore wall roughness

We have analyzed the mechanism of melting of molecular layers adsorbed in porous materials with cylindrical pores and rough pore walls. The working example studied here is a monolayer of methane molecules adsorbed in MCM-41 pore of diameter 2R=4 nm. Both experimental (neutron scattering) and simulation (Monte Carlo) results demonstrate the strong influence of the wall roughness on the melting mechanism. In particular, the transformation between solidlike and liquidlike monolayer phases adsorbed on a rough surface is observed over a broad temperature range, and solidlike properties persist even above the bulk methane melting temperature.     

Self-diffusion of methane in single-walled carbon nanotubes at sub- and supercritical conditions

The diffusivities of methane in single-walled carbon nanotubes (SWNTs) are investigated at various temperatures and pressures using classical molecular dynamics (MD) simulations complemented with grand canonical Monte Carlo (GCMC) simulations. The carbon atoms at the nanotubes are structured according to the (m, m) armchair arrangement and the interactions between each methane molecule and all atoms of the confining surface are explicitly considered. It is found that the parallel self-diffusion coefficient of methane in an infinitely long, defect-free SWNT decreases dramatically as the temperature falls, especially at subcritical temperatures and high loading of gas molecules when the adsorbed gas forms a solidlike structure. With the increase in pressure, the diffusion coefficient first declines rapidly and then exhibits a nonmonotonic behavior due to the layering transitions of the adsorbed gas molecules as seen in the equilibrium density profiles. At a subcritical temperature, the diffusion of methane in a fully loaded SWNT follows a solidlike behavior, and the value of the diffusion coefficient varies drastically with the nanotube diameter. At a supercritical temperature, however, the diffusion coefficient at high pressure reaches a plateau, with the limiting value essentially independent of the nanotube size. For SWNTs with the radius larger than approximately 2 nm, capillary condensation occurs when the temperature is sufficiently low, following the layer-by-layer adsorption of gas molecules on the nanotube surface. For SWNTs with a diameter less than about 2 nm, no condensation is observed because the system becomes essentially one-dimensional.     

Generation of a plastic crystal including methane rotator within metal-organic cavity by forcible gas adsorption

The structural determination of saturated adsorbed methane inside a metal-organic cavity by the forcible pressure swing adsorption method (ca. 13 MPa) through a gas-adsorption equilibrium state gives a methane inclusion crystal even at 298 K. The adsorbed methane molecules regularly locate in the pocket-like narrow corners of the necks of the 1-D channel without disorder. The thermal motion of the pseudo-spherical methane molecules seems to be effectively suppressed in its translation mode but allowed rotation. In cooling to 90 K, the crystal structure remained essentially unchanged while the thermal motion decreased, indicating that a lower temperature reduces the rotation of the adsorbed pseudo-spherical methane. The observed crystal structure could also be influenced by a reduction of the vibrational magnitude, and a phase transition from a static disordered structure to an ordered state might occur. The observed crystal state at a higher temperature should have a plastic crystal nature in terms of the randomness of the orientation of incorporated guests. The single-crystal adsorbent is effective for crystallographic observation of the thermal activated guest forced into regular alignment in the crystal lattice, which can be used as a model of the supercritical fluid.     

An experimental and molecular simulation study of the adsorption of carbon dioxide and methane in nanoporous carbons in the presence of water

The adsorption of carbon dioxide and methane in nanoporous carbons in the presence of water is studied using experiments and molecular simulations. For all amounts of adsorbed water molecules, the adsorption isotherms for carbon dioxide and methane resemble those obtained for pure fluids. The pore filling mechanism does not seem to be affected by the presence of the water molecules. Moreover, the pressure at which the maximum adsorbed amount of methane or carbon dioxide is reached is nearly insensitive to the loading of preadsorbed water molecules. In contrast, the adsorbed amount of methane or carbon dioxide decreases linearly with the number of guest water molecules. Typical molecular configurations obtained using molecular simulation indicate that the water molecules form isolated clusters within the host porous carbon due to the nonfavorable interaction between carbon dioxide or methane and water.     

Understanding diffusion in confined systems: methane in a ZK4 molecular sieve. A molecular dynamics simulation study

The equilibrium probability distribution of N methane molecules adsorbed in the interior of n alpha cages of the ZK4 zeolite, the all-silica analogue of zeolite A, is modeled by a modified hypergeometric distribution where the effects of mutual exclusion between particles are extracted from long molecular dynamics simulations. The trajectories are then analyzed in terms of time-correlation functions for the fluctuations in the occupation number of the alpha cages. The analysis digs out the correlations induced by the spatial distribution of the adsorbed molecules coupled with a migration mechanism where a molecule can pass from one alpha cage to another, one-by-one. These correlations lead to cooperative motion, which manifests itself as a nonexponential decay of the correlators. Our results suggest ways of developing improved lattice approaches that may be useful for studying diffusion in much larger systems and for a much longer observation time.     

A Metal–Organic Framework Based Methane Nano‐trap for the Capture of Coal‐Mine Methane

As a major greenhouse gas, methane, which is directly vented from the coal‐mine to the atmosphere, has not yet drawn sufficient attention. To address this problem, we report a methane nano‐trap that features oppositely adjacent open metal sites and dense alkyl groups in a metal–organic framework (MOF). The alkyl MOF‐based methane nano‐trap exhibits a record‐high methane uptake and CH₄/N₂ selectivity at 298 K and 1 bar. The methane molecules trapped within the alkyl MOF were crystalographically identified by single‐crystal X‐ray diffraction experiments, which in combination with molecular simulation studies unveiled the methane adsorption mechanism within the MOF‐based nano‐trap. The IAST calculations and the breakthrough experiments revealed that the alkyl MOF‐based methane nano‐trap is a new benchmark for CH₄/N₂ separation, thereby providing a new perspective for capturing methane from coal‐mine methane to recover fuel and reduce greenhouse gas emissions.     

甲烷在石墨化热解碳黑和活性炭上的吸附

为研究影响碳基吸附剂吸附超临界温度气体的主要因素,选择石墨化热解碳黑BP280和Ajax活性炭,分析超临界温度高压甲烷在其上的吸附平衡。应用容积法,在压力0~20.5 MPa、温度253 K~313 K测定甲烷的吸附平衡数据,并由等量吸附线标绘和亨利定律常数确定等量吸附热。引入通用吸附等温方程,再由方程的Langmuir标绘确定最大吸附容量,进而通过方程的线性化计算吸附平衡态中甲烷分子的作用能。结果表明,甲烷在两种吸附剂上的最大吸附容量均随温度而变化,并都小于液态甲烷的密度;甲烷在碳黑和活性炭上的等量吸附热分别为11.9 kJ/mol~12.5 kJ/mol和17.5 kJ/mol~22.5 kJ/mol,体现了两种吸附剂不同的表面能量分布;甲烷分子间作用能随吸附量的变化特点反映了超临界温度甲烷以类似于压缩气体状态聚集的特点和吸附剂结构上的差异。碳基吸附剂的比表面积和微孔容积是影响其储存甲烷容量的重要因素。     

Rotational tunnelling of methane on the surface of graphitized carbon blacks studied by neutron scattering spectroscopy

Rotational tunnelling transitions of methane adsorbed on the surface of graphitized carbon black have been observed by incoherent neutron inelastic scattering. Two transitions have been observed, at 58 μeV and 108 μeV, which arise from the barrier to rotation about axes parallel to the surface. The methane molecules undergo rotational diffusion about an axis perpendicular to the surface. The tunnelling transitions are quite sharp at 6 K but become broader as the temperature is raised. At 30 K the motion is best described as isotropic rotational diffusion. The tunnelling spectrum has been observed on two different graphitized carbon blacks, Vulcan III (71 m² g^?1) and Sterling FT (11 m² g^?1). the latter has a more homogeneous surface and gives a sharper spectrum. Tunnelling has also been observed for methane adsorbed on Sterling FT preplated with a monolayer of xenon. When a second layer of methane is added to the first the tunnelling spectrum becomes broad and an inelastic feature appears at higher energy corresponding to a slightly hindered rotation. The value of using tunnelling spectra of adsorbed species to test models of surface forces is discussed with examples of different atom—atom potential parameters.     

基于ReaxFF的甲烷无氧转化气相机理研究

With the rapid consumption of petrochemical resources and massive exploitation of shale gas, the use of natural gas instead of petroleum to produce chemical raw materials has attracted significant attention. While converting methane to chemicals, it has long seemed impossible to avoid its oxidation into O-containing species, followed by de-oxygenation. A breakthrough in the nonoxidative conversion of methane was reported by Guo et al. (Science 2014, 344, 616), who found that Fe©SiO₂ catalysts exhibited an outstanding performance in the conversion of methane to ethylene and aromatics. However, the reaction mechanism is still not clear owing to the complex experimental reaction conditions. One view of the reaction mechanism is that methane molecules are first activated on the Fe©SiC₂ active center to form methyl radicals, which then desorb into the gas phase to form the ethylene and aromatics. In this study, ReaxFF methods are applied to five model systems to study the gas-phase reaction mechanism under near-experimental conditions. For the pure gas-phase methyl radical system, the main simulation product is ethane after 10 ns simulation, which is produced by the combination of methyl radicals. Although a small amount of ethylene produced by C₂H₆ dehydrogenation can be detected, it is difficult to explain the high selectivity for ethylene in the experiment. When the methyl radicals are mixed with hydrogen and methane molecules, ethane remains the main product, together with some methane produced by the collision of hydrogen with methyl radicals, while ethylene is still difficult to produce. With the addition of hydrogen radicals to the methane atmosphere, methane activation can be enhanced by hydrogen radical collisions, which produce some methyl radicals and hydrogen molecules, but the methyl radicals eventually combine with the hydrogen species to produce methane molecules again. If some hydrogen molecules and methyl radicals are added to the CH₄/H∙ system, the activation of methane molecules by hydrogen radicals will be weakened. Hydrogen radicals are more likely to combine with themselves or with methyl radicals to form hydrogen and methane molecules, and the high selectivity for ethylene remains difficult to achieve. Thermal cracking of C₁₀H₁₂ at high temperature can produce hydrogen radicals and ethylene at the same time, which can partially explain the enhanced methane conversion and ethylene selectivity in the experiment of Hao et al. (ACS Catal. 2019, 9, 9045). Overall, the selective production of ethylene by nonoxidative conversion of methane over Fe©SiO₂ catalyst appears hard to achieve via a gas-phase mechanism. The catalyst surface may play a key role in the entire process of methane transformation.     

Electron–Proton Co‐doping‐Induced Metal–Insulator Transition in VO2 Film via Surface Self‐Assembled l‐Ascorbic Acid Molecules

Charge doping is an effective way to induce the metal–insulator transition (MIT) in correlated materials for many important utilizations, which is however practically limited by problem of low stability. An electron–proton co‐doping mechanism is used to achieve pronounced phase modulation of monoclinic vanadium dioxide (VO₂) at room temperature. Using l ‐ascorbic acid (AA) solution to treat VO₂, the ionized AA^? species donate electrons to the adsorbed VO₂ surface. Charges then electrostatically attract surrounding protons to penetrate, and eventually results in stable hydrogen‐doped metallic VO₂. The variations of electronic structures, especially the electron occupancy of V 3d/O 2p hybrid orbitals, were examined by synchrotron characterizations and first‐principle theoretical simulations. The adsorbed molecules protect hydrogen dopants from escaping out of lattice and thereby stabilize the metallic phase for VO₂.     

STM studies on adsorbed liquid crystal on HOPG

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Scanning tunneling microscopy study of metal-free phthalocyanine monolayer structures on graphite

Low temperature scanning tunneling microscopy (STM) studies of metal-free phthalocyanine (H2Pc) adsorbed on highly oriented pyrolytic graphite (HOPG) have shown ordered arrangement of molecules for low coverages up to 1 ML. Evaporation of H2Pc onto HOPG and annealing of the sample to 670 K result in a densely packed structure of the molecules. Arrangements of submonolayer, monolayer, and monolayer with additional adsorbed molecules have been investigated. The high resolution of our investigations has permitted us to image single molecule orientation. The molecular plane is found to be oriented parallel to the substrate surface and a square adsorption unit cell of the molecules is reported. In addition, depending on the bias voltage, different electronic states of the molecules have been probed. The characterized molecular states are in excellent agreement with density functional theory ground state simulations of a single molecule. Additional molecules adsorbed on the monolayer structures have been observed, and it is found that the second layer molecules adsorb flat and on top of the molecules in the first layer. All STM measurements presented here have been performed at a sample temperature of 70 K.     

Water adsorption on a p(2x2)-Ni(111)-O surface studied by surface x-ray diffraction and infrared reflection absorption spectroscopy at 25 and 140 K

The adsorption of water molecules on an oxygen-predosed p(2x2)-Ni(111)-O surface was studied by surface x-ray diffraction and infrared reflection absorption spectroscopy (IRAS) at temperature of 25 and 140 K. Precise structures including adsorbed water, predosed oxygen, and substrate nickel atoms at these two temperatures were determined by x-ray structural analysis. It was found that water molecules adsorb on oxygen additive sites, forming a hydrogen bond at 25 K. A predosed 2x2 oxygen atom appears to accommodate one, two, or three water molecules at positions relating to threefold rotation symmetry. When the surface temperature was raised to 140 K, water molecules appear at an atop site of Ni. The distance between Ni and the oxygen atoms of a monomer water molecule was found to be 0.2241(22) nm. The adsorbed water molecule induces buckling and a lateral shift of the substrate nickel. The IRAS results provided evidence regarding the existence of two distinct adsorption sites. Water molecules in the low-temperature phase exhibit bands from both hydrogen-bonded nuOD and free OD stretchings, while those in the high-temperature phase lie flat with a molecular plane parallel to the surface.     

Molecular simulation of adsorption and separation of mixtures of short linear alkanes in pillared layered materials at ambient temperature

Grand canonical Monte Carlo and configurational-bias Monte Carlo techniques are carried out to simulate the adsorption of ternary and quaternary mixtures of short linear alkanes, involving methane, ethane, propane, and n-butane, in pillared layered materials at ambient temperature, T=300 K. In the simulation, a pillared layered pore is modeled by a uniform distribution of pillars between two layered walls built by making two separate talc lamellas parallel each other with a given size of interlayer distance. The interaction between fluid molecules and two layered walls is measured by storing potentials calculated in advance at a series of grid points. The interaction between fluid molecules and pillars is also calculated by a site-to-site method. The potential model proposed in this work is proved to be effective because of the simulation result being good agreement with the experimental data for the adsorption of nitrogen at 77 K. Then, the adsorption isotherms of mixtures of short linear alkanes in pillared layered pores with three different porosities psi=0.98, 0.93 and 0.85, and three pore widths H=1.02, 1.70 and 2.38 nm at 300 K are obtained by taking advantage of the model. The simulation results tell us that the longer chain component is preferentially adsorbed at low pressures, and its adsorption increases and then decreases as the pressure increases while the shorter chain component is still adsorbed at high pressures. Moreover, the sorption selectivity of pillared layered materials for the longest chain component in alkane mixtures increases as the mole fraction of methane in the gas phase increases. The selectivity of pillared layered materials for the longest chain component in alkane mixtures also increases as the pore width decreases and the porosity increases.     

Fe(II)-induced transformation from ferrihydrite to lepidocrocite and goethite

The transformation of Fe(II)-adsorbed ferrihydrite was studied. Data tracking the formation of products as a function of pH, temperature and time is presented. The results indicate that trace of Fe(II) adsorbed on ferrihydrite can accelerate its transformation obviously. The products are lepidocrocite and/or goethite and/or hematite, which is different from those without Fe(II). That is, Fe(II) not only accelerates the transformation of ferrihydrite but also leads to the formation of lepidocrocite by a new path. The behavior of Fe(II) is shown in two aspects—catalytic dissolution-reprecipitation and catalytic solid-state transformation. The results indicate that a high temperature and a high pH(in the range from 5 to 9) are favorable to solid-state transformation and the formation of hematite, while a low temperature and a low pH are favorable to dissolution-reprecipitation mechanism and the formation of lepidocrocite. Special attentions were given to the formation mechanism of lepidocrocite and goethite.     

Optical and chemical studies of II–VI compound clusters

Recent experimental results on the structural, chemical, and optical properties of II–VI compound clusters containing between 2 and 24 molecules are presented. Stability patterns in the mass spectra of MgO clusters correlate with stable structures predicted for ionic clusters. The time dependence of H₂O adsorption onto MgO clusters is measured and found to vary strongly as a function of the number of adsorbed molecules. A sharp peak in the photodissociation probability is observed for metal-excess SrO and CaO cluster ions near 2.0 eV.     

How does the first water shell fold proteins so fast?

First shells of hydration and bulk solvent play a crucial role in the folding of proteins. Here, the role of water in the dynamics of proteins has been investigated using a theoretical protein-solvent model and a statistical physics approach. We formulate a hydration model where the hydrogen bonds between water molecules pertaining to the first shell of the protein conformation may be either mainly formed or broken. At thermal equilibrium, hydrogen bonds are formed at low temperature and are broken at high temperature. To explore the solvent effect, we follow the folding of a large sampling of protein chains, using a master-equation evolution. The dynamics shows a clear mechanism. Above the glass-transition temperature, a large ratio of chains fold very rapidly into the native structure irrespective of the temperature, following pathways of high transition rates through structures surrounded by the solvent with broken hydrogen bonds. Although these states have an infinitesimal probability, they act as strong dynamical attractors and fast folding proceeds along these routes rather than pathways with small transition rates between configurations of much higher equilibrium probabilities. At a given low temperature, a broad jump in the folding times is observed. Below this glass temperature, the pathways where hydrogen bonds are mainly formed become those of highest rates although with conformational changes of huge relaxation times. The present results reveal that folding obeys a double-funnel mechanism.     

甲烷在中孔分子筛MCM-41中吸附的计算机模拟

采用巨正则系综Monte Carlo方法研究了甲烷在两个不同孔径的MCM-41中不同温度下的吸附等温线和其在孔中的相行为和排列方式.模拟结果显示,在较小孔径的MCM-41中,流体分子达到毛细凝聚所需的化学位较小,并且观察到两个孔径下计算机模拟得到的亚稳态区域都非常宽,使得层状转变（如果有的话）被包含在这个区域.通过比较两种孔径下达到毛细凝聚后的构型,可以看出,在3.5 nm的孔中流体的分子结构出现非常有序的排列,而在5.0 nm的孔中则没有.在常温300 K时甲烷的吸附的计算机模拟表明,孔壁对流体分子的作用仅仅影响较靠近壁面附近的流体分子的排列,而对孔中间的分子几乎没有影响.     

Thermally Activated Adsorption in Metal–Organic Frameworks with a Temperature-Tunable Diffusion Barrier Layer

Modification of the external surfaces of metal–organic frameworks offers a new level of control over their adsorption behavior. It was previously shown that capping of MOFs with ethylenediamine (EDA) can effectively retain small gaseous molecules at room temperature. Reported here is a temperature-induced variation in the capping-layer gate-opening mechanism through a combination of in situ infared experiments and ab initio simulations of the capping layer. An atypical acceleration and increase in the loading of weakly adsorbed molecules upon raising the temperature above room temperature is observed. These findings show the discovery of novel temperature-dependent kinetics that goes beyond standard kinetics and suggest a new avenue for tailoring selective adsorption by thermally tuning the surface barrier.