洁净和氧吸附的Cu(100)表面重构的理论研究

The interaction of atomic oxygen with the clean Cu(100) surface has been studied by means of cluster and periodic slab models density functional theory in the present paper. The Cu(4,9,4) cluster and a three-layer slab with c(2×2) structure are used to model the perfect Cu(100) surface. Three possible adsorption sites,top, bridge and hollow site, were considered in the calculations. The predicted results show that the hollow site is the prefer site for atomic oxygen adsorbed on Cu(100) surface energetically. This is in good agreement with the experiment. The calculated binding energies are respective 2.014, 3.154 and 3.942 eV for top, bridge and hollow sites at mPW1PW91/LanL2dz level for the cluster model. The geometry of Cu(100) surface has also been optimized theoretically with various density functional methods and the results show that the prediction from the B3PW91/LanL2dz and mPW1PW91/LanL2dz reproduce the experimental observation.The frontier molecular orbitals and partial density of states analysis show that the electron transfer from the d orbital of substrate to the p orbital of the surface oxygen atom.     

Photoelectron spectroscopic study of the oxyallyl diradical

The photoelectron spectrum of the oxyallyl (OXA) radical anion has been measured. The radical anion has been generated in the reaction of the atomic oxygen radical anion (O(?-)) with acetone. Three low-lying electronic states of OXA have been observed in the spectrum. Electronic structure calculations have been performed for the triplet states ((3)B(2) and (3)B(1)) of OXA and the ground doublet state ((2)A(2)) of the radical anion using density functional theory (DFT). Spectral simulations have been carried out for the triplet states based on the results of the DFT calculations. The simulation identifies a vibrational progression of the CCC bending mode of the (3)B(2) state of OXA in the lower electron binding energy (eBE) portion of the spectrum. On top of the (3)B(2) feature, however, the experimental spectrum exhibits additional photoelectron peaks whose angular distribution is distinct from that for the vibronic peaks of the (3)B(2) state. Complete active space self-consistent field (CASSCF) method and second-order perturbation theory based on the CASSCF wave function (CASPT2) have been employed to study the lowest singlet state ((1)A(1)) of OXA. The simulation based on the results of these electronic structure calculations establishes that the overlapping peaks represent the vibrational ground level of the (1)A(1) state and its vibrational progression of the CO stretching mode. The (1)A(1) state is the lowest electronic state of OXA, and the electron affinity (EA) of OXA is 1.940 ± 0.010 eV. The (3)B(2) state is the first excited state with an electronic term energy of 55 ± 2 meV. The widths of the vibronic peaks of the X? (1)A(1) state are much broader than those of the a? (3)B(2) state, implying that the (1)A(1) state is indeed a transition state. The CASSCF and CASPT2 calculations suggest that the (1)A(1) state is at a potential maximum along the nuclear coordinate representing disrotatory motion of the two methylene groups, which leads to three-membered-ring formation, i.e., cyclopropanone. The simulation of b? (3)B(1) OXA reproduces the higher eBE portion of the spectrum very well. The term energy of the (3)B(1) state is 0.883 ± 0.012 eV. Photoelectron spectroscopic measurements have also been conducted for the other ion products of the O(?-) reaction with acetone. The photoelectron imaging spectrum of the acetylcarbene (AC) radical anion exhibits a broad, structureless feature, which is assigned to the X? (3)A' state of AC. The ground ((2)A') and first excited ((2)A') states of the 1-methylvinoxy (1-MVO) radical have been observed in the photoelectron spectrum of the 1-MVO ion, and their vibronic structure has been analyzed.     

Computational study of the adsorption energetics and vibrational wavenumbers of NH3 Adsorbed on the Ni(111) Surface

The structure and stabilities of NH(3) adsorbed on different sites of a Ni(111) surface are compared based on density functional, plane-waves calculations within a periodic framework. The surface has been modeled by 4- and 5-layer slabs with 2 x 2 and 3 x 3 unit cells. Calculated results are in good agreement with available experimental data, confirming the atop adsorption site to be the most favorable, with no preferred azimuthal orientation for the H atoms. For NH(3) adsorbed at the atop site, the one-dimensional potential energy profiles along the N-H and N-Ni bonds and the coupling between adjacent N-H bond oscillators have been calculated and fitted to an analytical expression using an accurate anharmonic potential model. Variational calculations have been performed to obtain frequencies for the N-H and N-Ni stretching vibrations and N-H stretching line widths. The model for calculating line widths has also been tested with CO adsorbed at the hcp hollow of the Ni(111) surface.     

Cysteine adsorption on the Au(111) surface and the electron transfer in configuration of a scanning tunneling microscope: A quantum-chemical approach

Adsorption of two forms, molecule and radical, of amino acid L-cysteine (Cys) on the Au₁₂ cluster that simulates the (111) face of single-crystal gold is studied in the framework of the density functional theory. Effects of solvation of adsorbed Cys particles and lateral interaction in a monolayer are analyzed. The simulation predicts a commensurate adsorption energetics of the molecule and radical, with a difference between the “on-top,” “hollow,” and “bridge” positions. An analysis of lateral electrostatic interactions points to the stability of a cluster comprising six Cys particles, which conforms to the size of a fragment observed experimentally. Adsorption calculations are used to build three-dimensional isosurfaces (STM images), where the tungsten needle of the scanning tunneling microscope is simulated by a tungsten atom or by small clusters. The calculated images are sensitive to both the Cys shape and the orientation of adsorbed Cys particles. Calculation results are compared with fresh in situ submolecular-resolution STM data. Simulated images (with commensurate contributions made by sulfur atom and amino group) built for Cys radical adsorbed in the “on-top” position give best conformance to experiment.     

The paradox of an insulating contact between a chemisorbed molecule and a wide band gap semiconductor surface

Controlling the intrinsic optical and electronic properties of a single molecule adsorbed on a surface requires electronic decoupling of some molecular orbitals from the surface states. Scanning tunneling microscopy experiments and density functional theory calculations are used to study a perylene molecule derivative (DHH-PTCDI), adsorbed on the clean 3 × 3 reconstructed wide band gap silicon carbide surface (SiC(0001)-3 × 3). We find that the LUMO of the adsorbed molecule is invisible in I(V) spectra due to the absence of any surface or bulk states and that the HOMO has a very low saturation current in I(z) spectra. These results present a paradox that the molecular orbitals are electronically isolated from the surface of the wide band gap semiconductor even though strong chemical bonds are formed.     

吸附O的Cu(110)c(2×1)表面原子结构和电子态

采用第一性原理的密度泛函理论方法计算了清洁Cu(110)表面和吸附O原子的Cu(110) c(2×1)表面的原子结构, 结构弛豫和电子结构, 得到了各种表面结构参数. 分别计算了O原子在Cu(110)表面三个可能吸附位置吸附后的能量, 并给出了能量最低的吸附位置上各层原子的弛豫特性和态密度. 结果表明O吸附后的Cu(110)表面有附加列(added-row)再构的特性, O原子吸附在最表层铜原子上方, 与衬底Cu原子的垂直距离为0.016 nm, 以氧分子为能量基准的吸附能为－1.94 eV; 同时由于Cu 3d- O 2p态的杂化作用使得低于费米能级5.5~6.0 eV的范围内出现了局域的表面态. 计算得到清洁的和氧吸附的Cu(110)表面的功函数分别为4.51 eV和4.68 eV. 电子态密度的结果表明：在Cu(110) c(2×1) 表面O吸附的结构下, 吸附O原子和金属衬底之间的结合主要是由于最表层Cu原子3d态和O原子2p态的相互作用.     

H2在WO3表面解离吸附反应的第一性原理研究

采用第一性原理方法对H2在WO3表面的解离吸附反应进行了研究.首先通过清洁表面模型的计算,证明了c(2×2)重构表面是最稳定的WO3(001)表面构型;进而研究了4种可能的H2解离吸附模型,结果表明最可能的吸附反应为两个氢原子吸附在表面O1c原子上,氢原子被氧化在表面形成水,同时伴随着产生一个表面氧空位.态密度结果表明氢的吸附导致体系能带下移,导带部分填充电子,从而阐明了实验中WO3吸附H2后电导率上升的微观机理.     

Relationship between the c(4×2) and the (√3×√3)R30° phases in alkanethiol self-assembled monolayers on Au(111)

Transformation between the two well-known phases of alkanethiol monolayers on Au(111), c(4×2) and (√3×√3)R30°, has been studied using scanning tunneling microscopy in ultra-high vacuum. Among the many versions of the c(4×2) phases observed, one particular structure where a lateral shift of adsorbate by as much as 0.17 nm within the unit cell is found. This lateral shift along the [112[combining macron]] direction corresponds to the movement of one adsorbed unit, towards its nearest neighbour from one hollow site to another (fcc to hcp, or hcp to fcc).     

Ni(110)-p2mg(2×1)-CO表面的几何结构和电子态

利用密度泛函理论(DFT)总能计算研究了Ni(110)-p2mg(2×1)-CO表面的原子结构和电子态. 计算结果表明: CO分子吸附于该表面的短桥位附近, 分子吸附能为1.753 eV, CO分子的键长dC—O为0.117 nm, 分子与表面竖直方向的夹角为20.0°, 碳原子和短桥位中点的连线与竖直方向的夹角为20.9°; 吸附的CO分子内原子间的伸缩振动频率为1876和1803 cm-1. 态密度研究结果表明吸附作用主要来自CO分子π、σ轨道与衬底d轨道间的杂化作用. CO分子σ轨道和衬底表面镍原子dxz轨道杂化形成的表面电子态主要位于费米能以下-10.4 至-8.8 eV和-7.4至-5.1 eV 范围内. σ和dxz轨道间的杂化作用可能是形成p2mg表面对称性的重要因素之一.     

氢原子在Be(0001)表面吸附的密度泛函理论研究

采用第一性原理的密度泛函理论研究单个氢原子和多个氢原子在Be(0001)表面吸附性质.给出了氢吸附Be(0001)薄膜表面的原子结构、吸附能、饱和度、功函数、偶极修正等特性参数.同时也讨论了相关吸附性质与氢原子覆盖度(0.06-1.33ML)的关系.计算结果表明:氢原子的吸附位置与覆盖度之间有强烈的依赖关系,覆盖度低于0.67ML时,氢原子能量上易于占据fcc或hcp的中空位置;覆盖度为0.78ML时,中空位与桥位为氢原子的最佳吸附位;覆盖度在0.89到1.00ML时,桥位是氢原子吸附能量最有利的位置;以上覆盖度中Be(0001)表面最外层铍原子的结构均没有发生明显变化.当覆盖度为1.11-1.33ML,高覆盖度下Be(0001)表面的最外层铍原子部分发生膨胀,近邻氢原子渗入到铍表面次层,氢原子易于占据在hcp和桥位.吸附结构中的氢原子比氢分子中的原子稳定.当覆盖度大1.33ML时,计算结果没有发现相对于氢分子更稳定的吸氢结构.同时从分析偶极修正和氢原子吸附垂直高度随覆盖度的变化关系判断氢覆盖度为1.33ML时,在Be(0001)表面吸附达到饱和.     

Soft-x-ray photoemission spectroscopy and ab initio studies on the adsorption of NO2 molecules on defective multiwalled carbon nanotubes

The adsorption of NO(2) molecules on defective multiwalled carbon nanotubes has been studied by soft-x-ray photoemission. The valence band and carbon core-level spectra have been acquired before, during, and after NO(2) exposure. The spectra show a reversible decrease of the density of states at the top of the valence band when NO(2) molecules are adsorbed on the (carbon nanotubes) CNTs. No shift of the C 1s spectra has been observed. Theoretical calculations, using density-functional theory, have been performed on the CNT + NO(2) system, considering semiconducting nanotubes with different diameters and introducing a Stone-Wales [Chem. Phys. Lett. 128, 501 (1986)] defect. The calculation confirms the decrease of the density of states at the top of the valence band in the CNT + NO(2) system, while close to the adsorption site new states appear very close to the Fermi level.     

Density functional theory (DFT) investigation of the adsorption of the CH3OH/Au(100) system

The adsorption of methanol on flat Au (100) surface with different coverages (θ = 1.0, 0.5 and 0.25 monolayer (ML)) is studied using density functional theory. Among the three sites (top, bridge and hollow) and coverages investigated in the present work, no adsorption is stable for θ = 1.0 ML. The most energetically preferred site of adsorption for CH₃OH is found to be the hollow site for coverages of 0.25 ML and 0.50 ML. We also find that for all adsorption sites, an increase in CH₃OH coverage triggers a decrease in the adsorption energy. The geometric parameters, local density of states and work function changes are analysed in detail. The coadsorption of methoxy and hydrogen has also investigated. In addition, the dissociation of methanol on Au(100) has been studied, and an activation energy was found to be 1.72 eV. This result compare with existing data in the literature for Au(111) surface. Copyright © 2013 John Wiley & Sons, Ltd.     

氢原子吸附的Cu(100)表面原子结构和电子态

用密度泛函理论的总能计算研究了金属铜(100)面的表面原子结构以及在不同覆盖度时氢原子的吸附状态. 研究结果表明, 在Cu(100)c(2×2)/H表面体系中, 氢原子吸附的位置是在空洞位置, 距最外层Cu原子层的距离为0.052 nm, 相应的Cu—H键长为0.189 nm, 并通过计算结构参数优化否定了其它的吸附位置模型. 总能计算得出Cu(100)c(2×2)/H表面的功函数为4.47 eV, 氢原子在这一体系的吸附能为2.37 eV(以孤立氢原子为能量参考点). 通过与衬底原子的杂化, 氢原子形成了具有二维特征的氢能带结构, 在费米能级以下约0.8 eV处出现的表面局域态是Cu(S)-H-Cu(S-1)型杂化的结果. 采用Cu(100)表面p(1×1)、p(2×2)和p(3×3)的三种氢吸附结构分别模拟1, 1/4, 1/9的原子单层覆盖度, 计算结果表明, 随着覆盖度的增加, 被吸附的氢原子之间的距离变短, 使得它们之间的静电排斥和静电能增大, 从而导致表面吸附能和吸附H原子与最外层Cu原子间垂直距离(ZH-Cu)逐渐减小. 在较低的覆盖度下, 氢原子对Cu(100)表面的影响主要表现为单个原子吸附作用的形式. 通过总能计算还排除了Cu(100)表面(根号2×2根号2)R45°-2H缺列再构吸附模型的可能性.     

Binding structures of propylene glycol stereoisomers on the Si(001)-2×1 surface: a combined scanning tunneling microscopy and theoretical study

The binding configuration of propylene glycol stereoisomer molecules adsorbed on the Si(001)-2×1 surface was investigated using a combination of scanning tunneling microscopy (STM) and density functional theory calculations. Propylene glycol was found to adsorb dissociatively via two hydroxyl groups exclusively as a bridge between the ends of two adjacent dimers along the dimer row. The chirality was preserved during bonding to Si atoms and was identifiable with STM imaging. The large number of propylene glycol conformers in the gas phase was reduced to a single configuration adsorbed on the surface at low molecular coverage.     

乙烯自由基与臭氧反应的DFT计算研究

采用密度泛函B3LYP/6-311G**水平计算研究了O3氧化乙烯基（C2H3）的机理,全参数优化了反应势能面上各驻点的几何构型,用内禀反应坐标（IRC）计算和频率分析方法,对过渡态进行了验证.结果表明，乙烯基（C2H3）与O3之间有很强的反应活性.     

贵金属原子在CeO2(111)表面吸附的密度泛函理论研究

利用密度泛函理论系统研究了贵金属原子(Au、Pd、Pt和Rh)在CeO₂(111)表面的吸附行为。结果表明,Au吸附在氧顶位最稳定,Pd、Pt倾向吸附于氧桥位,而Rh在洞位最稳定。当金属原子吸附在氧顶位时,吸附强度依次为Pt > Rh > Pd > Au。Pd、Pt与Rh吸附后在Ce 4f、O 2p电子峰间出现掺杂峰;Au未出现掺杂电子峰,其d电子峰与表面O 2p峰在-4～-1 eV重叠。态密度分析表明,Au吸附在氧顶位、Pd与Pt吸附在桥位、Rh吸附在洞位时,金属与CeO₂(111)表面氧原子作用较强,这与Bader电荷分析结果相一致。     

Interaction of Pt clusters with the anatase TiO(2)(101) surface: a first principles study

The adsorption of Pt(n)() (n = 1-3) clusters on the defect-free anatase TiO(2)(101) surface has been studied using total energy pseudopotential calculations based on density functional theory. The defect-free anatase TiO(2)(101) surface has a stepped structure with a step width of two O-Ti bond distances in the (100) plane along the [10] direction and the edge of the step is formed by 2-fold-coordinated oxygen atoms along the [010] direction. For a single Pt adatom, three adsorption sites were found to be stable. Energetically, the Pt adatom prefers the bridge site formed by 2 2-fold-coordinated oxygen atoms with an adsorption energy of 2.84 eV. Electronic structure analysis showed that the Pt-O bonds formed upon Pt adsorption are covalent. Among six stable Pt(2) adsorption configurations examined, Pt(2) was found to energetically favor the O-O bridge sites on the step edge along [010] with the Pt-Pt bond axis perpendicular to [010]. In these configurations, one of the Pt atoms occupies the same O-O bridge site as for a single Pt adatom and the other one either binds a different 2-fold-coordinated oxygen atom on the upper step or a 5-fold-coordinated Ti atom on the lower terrace. Three triangular and three open Pt(3) structures were determined as minima for Pt(3) adsorption on the surface. Platinum trimers adsorbed in triangular structures are more stable than in open structures. In the most stable configuration, Pt(3) occupies the edge O-O site with the Pt(3) plane being upright and almost perpendicular to the [001] terrace. The preference of Pt(n)() to the coordinately unsaturated 2-fold-coordinated oxygen sites indicates that these sites may serve as nucleation centers for the growth of metal clusters on the oxide surface. The increase in clustering energy with increasing size of the adsorbed Pt clusters indicates that the growth of Pt on this surface will lead to the formation of three-dimensional particles.     

Theoretical Study of NO Dimer Adsorption and Dissociation on the CuCr2O4 （100） Surface

Theoretical simulation of the adsorption and dissociation of two NO molecules at the Cu^2＋, Cr^3＋ and bridge Cr^3＋ sites （b-Cr^3＋） on the normal spinel CuCr2O4 （100） surface has been carried out by density functional theory calculations. The results show that the formed N-down and O-down NO dimers are negatively charged. The formation of stable O-down dimers on the surface leads to the great elongation of N-O bond, which contributes to the NO reduction. The transition-state calculations indicate that the decomposition of O-down NO dimer at the b-Cr^3＋ site is most favorable and N2O is the major reduction product.     

Surface structure and energetics of hydrogen adsorption on the Fe(111) surface

Spin-polarized density functional theory calculations have been performed to characterize the hydrogen adsorption and diffusion on the Fe(111) surface at 2/3-, 1-, and 2-monolayer (ML) coverages. It is found that the most favored adsorption site for atomic hydrogen (H) is the top-shallow bridge site (tsb), followed by the quasi 4-fold site (qff) with the energy difference of about 0.1 eV, while the top site (t) is not competitive. Furthermore, the adsorbed atomic hydrogen (H) has a high mobility, as indicated by the small diffusion barriers. The local density of state (LDOS) analysis reveals that the Fe-H (tsb or qff) bond involves mainly the Fe 4s and 4p and H 1s orbitals with less contribution of the Fe 3d orbital, while the Fe 4s, 4p, and 3d orbitals all participate in the Fe-H (top) bond. In addition, the coverage effects on the adsorption configurations and adsorption energies are addressed.     

Methanol adsorption on the beta-Ga2O3 surface with oxygen vacancies: theoretical and experimental approach

Methanol adsorption on beta-Ga2O3 surface has been studied by Fourier transform infrared spectroscopy (FTIR) and by means of density functional theory (DFT) cluster model calculations. Adsorption sites of tetrahedral and octahedral gallium ions with different numbers of oxygen vacancies have been compared. The electronic properties of the adsorbed molecules have been monitored by computing adsorption energies, optimized geometry parameters, overlap populations, atomic charges, and vibrational frequencies. The gallia-methanol interaction has different behaviors according to the local surface chemical composition. The calculations show that methanol can react in three different ways with the gallia surface giving rise to a nondissociative adsorption, a dissociative adsorption, and an oxidative decomposition. The surface without oxygen vacancies is very reactive and produces the methanol molecule decomposition. The molecule is nondissociatively adsorbed by means of a hydrogen bond between the alcoholic hydrogen atom and a surface oxygen atom and a bond between the alcoholic oxygen atom and a surface gallium atom. Two neighbor oxygen vacancies on tetrahedral gallium sites produce the dissociation of the methanol molecule and the formation of a bridge bond between two surface gallium atoms and the methoxy group.