Sensitivity-Enhanced 13C-NMR Spectroscopy for Monitoring Multisite Phosphorylation at Physiological Temperature and pH

Abundant phosphorylation events control the activity of nuclear proteins involved in gene regulation and DNA repair. These occur mostly on disordered regions of proteins, which often contain multiple phosphosites. Comprehensive and quantitative monitoring of phosphorylation reactions is theoretically achievable at a residue-specific level using ¹H-¹⁵N NMR spectroscopy, but is often limited by low signal-to-noise at pH>7 and T>293 K. We have developed an improved ¹³Cα-¹³CO correlation NMR experiment that works equally at any pH or temperature, that is, also under conditions at which kinases are active. This allows us to obtain atomic-resolution information in physiological conditions down to 25 μm . We demonstrate the potential of this approach by monitoring phosphorylation reactions, in the presence of purified kinases or in cell extracts, on a range of previously problematic targets, namely Mdm2, BRCA2, and Oct4.     

One‐step ring‐closure procedure for 4,5‐dihydro‐1,3‐thiazino[5,4‐b]indole derivatives with Lawesson's reagent. The fifth dihydro‐1,3‐thiazino[b]indole isomer

We report a convenient approach for the synthesis of a new ring system: 4,5‐dihydro‐1,3‐thiazino[5,4‐b]indoles. The procedure involves the use of Lawesson's reagent in the presence of silica to achieve the one‐step ring‐closure reactions of 2‐benzoylamino‐3‐hydroxymethylindole intermediates to furnish 4,5‐dihydro‐2‐aryl‐1,3‐thiazino[5,4‐b]indoles. 2‐Phenylimino‐1,3‐thiazino[5,4‐b]indoles were obtained via the corresponding 3‐phenylthiourea‐2‐carboxylic acid ester derivatives by chemoselective reduction of the ester group, followed by ring closure under acidic conditions. The structures of the novel products were elucidated by IR, ¹H‐NMR, and ¹³C‐NMR spectroscopy, including 2D‐HMQC, 2D‐HMBC, and DEPT measurements. J. Heterocyclic Chem., (2011).     

Convenient Synthesis and Biological Activity of Mono and Diacyl 2,5‐Dimercapto‐1,3,4‐thiadiazole Derivatives

New derivatives of 2,5‐dimercapto‐1,3,4‐thiadiazole substituted both at one or two exocyclic sulfur atoms with a series of aroyl or ethoxycarbonyl groups were synthesized in reactions of 2,5‐dimercapto‐1,3,4‐thiadiazole salts with appropriate acid chlorides or ethyl chloroformate in mild conditions. The products were characterized by spectroscopy (¹H NMR, ¹³C NMR, IR, and HRMS). Some from the synthesized compounds were screened in vitro and in vivo for antibacterial and antifungal activities against a panel of reference strains of microorganisms. The study revealed that ethyl S‐(5‐mercapto‐1,3,4‐thiadiazol‐2‐yl) carbonothioate seems to be the most active and versatile compound against Gram‐positive bacteria, Gram‐negative bacteria, and plant pathogenic fungi.     

New steroid‐group‐containing borazine compounds and their 13C NMR spectra

New borazine compounds containing steroid units (cholesteryl and stigmasteryl) were prepared by the reactions of B,B′,B″‐trichloro‐N,N′,N″‐trimethylborazine with the 3‐chloro derivatives of the corresponding steroids under Grignard conditions. The products were characterized by ¹³C–¹H correlation NMR measurements to give fully assigned ¹³C NMR data. Copyright © 2001 John Wiley & Sons, Ltd.     

Synthesis of some pyrazole‐3‐carboxylic acid‐hydrazide and pyrazolopyridazine compounds

Furan‐2,3‐diones 1a‐c react with various hydrazines 2a‐c under different conditions to yield the pyrazole‐3‐carboxylic acid‐hydrazide 3a‐d . Cyclocondensation reactions of 1a or 7 with phenylhydrazine lead to derivatives of pyrazolo[3,4‐d]pyridazinones 6 and 8 , respectively. The structures of all products were confirmed by elemental analysis, IR, ¹H‐ and ¹³C‐NMR spectroscopic measurements.     

Synthesis of 15‐Cyano‐12‐oxopentadecano‐15‐lactone and 15‐Cyano‐ 12‐oxopentadecano‐15‐lactam

15‐Cyano‐12‐oxopentadecano‐15‐lactone was synthesized in 59% total yield starting from 2‐nitrocyclododecanone by Michael addition to acrylaldehyde, followed by reaction with trimethylsilylcyanide, hydrolysis, ring‐expansion, and Nef reaction. A two‐step, one‐pot synthesis of intermediate 2‐hydroxy‐4‐(1‐nitro‐2‐oxycyclododecyl)butanenitrile from 3‐(1‐nitro‐2‐oxocyclododecyl)propanal was developed and the conditions for the Nef reaction were studied. 15‐Cyano‐12‐oxopentadecano‐15‐lactam was synthesized in 40% total yield starting from 2‐nitrocyclododecanone by Michael addition to acrylaldehyde, followed by Strecker reaction, ring‐expansion, and Nef reaction. The conditions for the Strecker and Nef reactions were studied. The structures of the target compounds, intermediates, and by‐product were characterized by IR, ¹H‐ and ¹³C‐NMR, and elemental analysis or MS.     

One‐pot Synthesis of Novel 2,8‐dithioxopyrano[2,3‐d:6,5‐d′]dipyrimidine‐4,6(1H)‐dione Catalyzed by p‐Toluenesulfonic Acid

Novel 2,8‐dithioxopyrano[2,3‐d:6,5‐d′]dipyrimidine‐4,6(1H)‐dione derivatives were synthesized by a clean and efficient methodologies involving one‐pot regioselective and chemoselective reactions between two moles substituted thiobarbituric acid and 1 mol various aromatic aldehydes in the presence of p‐toluenesulfonic acid as a catalyst in EtOH with good yields in compression with alternative conditions such as microwave and promoted ultrasound. All of the compounds have been characterized by IR, ¹H NMR, ¹³C NMR spectral data, and elemental analyses.     

Quadruple‐Resonance Magic‐Angle Spinning NMR Spectroscopy of Deuterated Solid Proteins

¹H‐detected magic‐angle spinning NMR experiments facilitate structural biology of solid proteins, which requires using deuterated proteins. However, often amide protons cannot be back‐exchanged sufficiently, because of a possible lack of solvent exposure. For such systems, using ²H excitation instead of ¹H excitation can be beneficial because of the larger abundance and shorter longitudinal relaxation time, T₁, of deuterium. A new structure determination approach, “quadruple‐resonance NMR spectroscopy”, is presented which relies on an efficient ²H‐excitation and ²H‐¹³C cross‐polarization (CP) step, combined with ¹H detection. We show that by using ²H‐excited experiments better sensitivity is possible on an SH3 sample recrystallized from 30 % H₂O. For a membrane protein, the ABC transporter ArtMP in native lipid bilayers, different sets of signals can be observed from different initial polarization pathways, which can be evaluated further to extract structural properties.     

4,5‐Dihydro‐1,2,3‐oxadiazole: A Very Elusive Key Intermediate in Various Important Chemical Transformations

4,5‐Dihydro‐1,2,3‐oxadiazoles are postulated to be key intermediates in the industrial synthesis of ketones from alkenes, in the alkylation of DNA in vivo, and in the decomposition of N‐nitrosoureas; they are also a subject of great interest for theoretical chemists. In the presented report, the formation of 4,5‐dihydro‐1,2,3‐oxadiazole and the subsequent decay into secondary products have been studied by NMR monitoring analysis. The elusive properties evading characterization have now been confirmed by ¹H, ¹³C, and ¹⁵N NMR spectroscopy, and relevant 2D experiments at very low temperatures. Our experiments with suitably substituted N‐nitrosoureas using thallium(I) alkoxides as bases under apolar conditions answer important questions on the existence and the secondary products of 4,5‐dihydro‐1,2,3‐oxadiazole.     

Efficient Homogeneous Chemical Modification of Bacterial Cellulose in the Ionic Liquid 1‐N‐Butyl‐3‐methylimidazolium Chloride

Summary: Bacterial cellulose (BC), a unique type of cellulose, with high degree of polymerization of 6 500 could be dissolved easily in the ionic liquid 1‐N‐butyl‐3‐methylimidazolium chloride. For the first time, well‐soluble BC acetates and carbanilates of high degree of substitution (up to a complete modification of all hydroxyl groups) were accessible under homogeneous and mild reaction conditions. Characterization of the new BC derivatives by NMR and FTIR spectroscopy shows an unexpected distribution of the acetyl moieties in the order O‐6 > O‐3 > O‐2.

¹³C NMR spectrum (DMSO‐d₆) of a cellulose acetate with a DS of 2.25 synthesized in 1‐N‐butyl‐3‐methylimidazolium chloride.     

Synthesis of Novel Fluorescent 2‐{4‐[1‐(Pyridine‐2‐yl)‐1H‐pyrazol‐3‐yl] phenyl}‐2H‐naphtho [1,2‐d] [1,2,3] triazolyl Derivatives and Evaluation of Their Thermal and Photophysical Properties

Novel 2‐{4‐[1‐(pyridine‐2‐yl)‐1H‐pyrazol‐3‐yl] phenyl}‐2H‐naphtho [1,2‐d] [1,2,3] triazolyl fluorescent derivatives were synthesized from p‐nitrophenylacetic acid and 2‐hydrazino pyridine through Vilsmeier–Haack and diazotization reactions. Photophysical properties were evaluated, and results show that compounds have good fluorescence quantum yields. Thermal analysis showed that they are reasonably stable. The structures of the compounds were confirmed by FT‐IR, ¹H NMR, ¹³C NMR, and mass spectral and elemental analysis.     

Synthesis,NMR characterization and ab initio 6‐31G* study of 1‐aryl‐2,3‐dialkyl‐1,4,5,6‐tetrahydropyrimidinium salts

We describe the synthesis of a series of 1‐aryl‐2,3‐dialkyl‐1,4,5,6‐tetrahydropyrimidinium salts 1 , by alkylation of the corresponding 1,4,5,6‐tetrahydropyrimidines 2 . We analyze the changes in the ¹H and ¹³C NMR spectra of compounds 2 induced by protonation and quaternization. The results of an ab initio theoretical study on amidine 2a , and the cations resulting from its protonation ( 2aH ⁺) and quaternization ( la ⁺) are presented. A qualitative correlation was found between ¹³C NMR and theoretical data in the case of protonation. The influence of the substitution patterns in the ¹H and ¹³C NMR spectra of compounds 1 is also discussed.     

1,1‐Organoboration of bis(trimethylstannyl)ethyne with trimethylsilyl‐ and dimethylsilyl‐dialkylboryl‐substituted alkenes: organometallic‐substituted allenes

The reactions of bis(trimethylstannyl)ethyne, Me₃Sn–C?C–SnMe₃ ( 4 ), with trimethylsilyl‐ or dimethylsilyl‐dialkylboryl‐substituted alkenes 1 – 3 afford organometallic‐substituted allenes 5 , 6 and 8 , 9 in high yield. In the case of (E)‐2‐trimethylsilyl‐3‐diethylboryl‐2‐pentene ( 1) , a butadiene derivative 7 could be detected as an intermediate prior to rearrangement into the allene. All reactions were monitored by ²⁹Si and ¹¹⁹Sn NMR, and the products were characterized by an extensive NMR data set (¹H, ¹¹B, ¹³C, ²⁹Si, ¹¹⁹Sn NMR). Copyright © 2003 John Wiley & Sons, Ltd.     

New Reactions of N‐tert‐Butylimines; Formation of N‐Heterocycles by Methyl Radical Elimination on Flash Vacuum Thermolysis of N‐Benzylidene‐ and N‐(2‐Pyridylmethylidene)‐tert‐butylamines

Thermal reactions of N‐benzylidene‐ and N‐(2‐pyridylmethylidene)‐tert‐butylamines ( 5 and 13 ) under FVT conditions have been investigated. Unexpectedly, at 800 °C, compound 5 yields 1,2‐dimethylindole and 3‐methylisoquinoline. In the reaction of 13 at 800 °C, 3‐methylimidazo[1,5‐a]pyridine was obtained as the major product. Mechanisms of these reactions have been proposed on the basis of DFT calculations. Furthermore, UV‐photoelectron spectroscopy combined with FVT has been applied for direct monitoring and characterization of the thermolysis products in situ.     

Synthesis and Pharmacological Evaluation of Some New Chromeno[3,4‐c]pyrrole‐3,4‐dione‐based N‐Heterocycles as Antimicrobial Agents

The reaction of 2‐oxo‐2H‐chromene‐3‐carboxamide ( 1 ) with carbon disulfide afforded 1‐mercaptopyrrolo[3,4‐c ]chromene‐3,4‐dione ( 3 ). The latter compound was utilized as versatile building block for new azole systems via incorporating in a series of manipulations including cyclocondensation reactions. The structure of the newly synthesized compounds has been confirmed by IR, ¹H NMR, ¹³C NMR, mass spectral, and elemental analysis. Furthermore, some selected compounds were screened in vitro for their antimicrobial activities. The results declared that most of the synthesized compounds have high antimicrobial activity.     

Ultrasound‐Assisted Synthesis of 6‐Methyl‐1,2,3,4‐tetrahydro‐N‐aryl‐2‐oxo/thio‐4‐arylpyrimidine‐5‐carboxamides Catalyzed by Uranyl Nitrate Hexahydrate

An efficient and simple method developed for the synthesis of 6‐methyl‐1,2,3,4‐tetrahydro‐N‐aryl‐2‐oxo/thio‐4‐arylpyrimidine‐5‐carboxamide derivatives ( 4a‐o ) using UO₂(NO₃)₂.6H₂O catalyst under conventional and ultrasonic conditions. The ultrasound irradiation synthesis had shown several advantages such as milder conditions, shorter reaction times and higher yields. The structures of all the newly synthesized compounds have been confirmed by FT‐IR, ¹H NMR, ¹³C NMR and mass spectra.     

Transesterification of oligomeric dialkyl phosphonates,leading to the high‐molecular‐weight poly‐H‐phosphonates

Polycondensation of 1,10‐decanediol with dimethyl‐H‐phosphonate taken in excess leads to oligomers with methyl‐H‐phosphonate end groups. The polytransesterification of the resulting oligomer as well as the related model reactions were studied. The synthesis of poly(decamethylene‐H‐phosphonate) was analyzed and the final product had M̄_n = 1.4–1.9 10⁴ (from end groups, vpo, and M̄_n of the derived polymers). The exchange of the ester groups between two homoesters (dimethyl and diethyl phosphonates) used as models, conducted at r.t. and catalyzed by metal alkoxide provides mixed (hetero) ester in a few minutes. If the concentration of the catalyst is not high enough, then the reaction does not go to equilibrium, because the alcoholate anions are converted into the anions of monoesters of the H‐phosphonic acid, catalytically inactive at this temperature. However, these monoesters become catalytically active at higher temperature, i.e., at the conditions used for preparing higher molecular‐weight products by transesterification. The apparent rate constants (k̄) of the ester exchange catalyzed by monoester salt (modeling the propagation step in polytransesterification) were determined by two independent methods; at 130°C k̄ ∼ 1.0 · 10⁻² mol⁻¹ · L · s⁻¹. The detailed study of the model polytransesterification, and particularly of the polymer end groups appearance and disappearance (studied by ¹H‐, ¹³C‐, and ³¹P‐NMR) allowed postulation of the reaction mechanism and confirmed our previous work, describing formation at these conditions of polymers with M̄_n > 10⁴. © 1999 John Wiley & Sons, Inc. J Polym Sci A: Polym Chem 37: 1365–1381, 1999     

Functionalization of polymeric organolithium compounds with 3,4‐epoxy‐1‐butene: Precursors for diene‐functionalized macromonomers

The functionalization of polymeric organolithiums (PLi) with 3,4‐epoxy‐1‐butene (EPB) in a hydrocarbon solution yielded the corresponding hydroxybutene‐functionalized polymers in high yields (>95%). Three modes of addition of PLi to EPB were observed (1,4, 3,4, and 4,3). The products and chain‐end structures were characterized by ¹H NMR, ¹³C NMR, attached‐proton‐test ¹³C NMR, calculated ¹³C NMR chemical shifts, and matrix‐assisted laser desorption/ionization time‐of‐flight mass spectrometry (MALDI‐TOF MS). The regioselectivity of the addition depended on the PLi chain‐end structure, the reaction conditions, and the addition of lithium salts or Lewis bases. In the absence of additives, the functionalization of poly(styryl)lithium (PSli) produced equal amounts of 1,4‐, 3,4‐, and 4,3‐addition, as determined by quantitative ¹³C NMR analysis. The use of a low temperature (6 °C), inverse addition, the addition of triethylamine (TEA; [TEA]/[PSLi] = 20) as a Lewis base, or dienyllithium chain ends produced polymers with only the 1,4‐addition product. Mild dehydration of the hydroxybutene‐functionalized polymer with p‐toluenesulfonic acid produced the corresponding diene‐functionalized macromonomer, as shown by MALDI‐TOF MS. © 2003 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 41: 947–957, 2003     

Synthesis,Crystal Structure,and Fungicidal Activity of Novel 1,5‐Diaryl‐1H‐Pyrazol‐3‐Oxy Derivatives Containing Oxyacetic Acid or Oxy(2‐thioxothiazolidin‐3‐yl)ethanone Moieties

A series of novel 1,5‐diaryl‐1H‐pyrazol‐3‐oxy derivatives containing oxyacetic acid or oxy(2‐thioxothiazolidin‐3‐yl)ethanone moieties were prepared from methyl 3‐arylacrylates via a serial of reactions included addition‐cyclization, oxidation, substitution, hydrolysis, and condensation. Their structures were confirmed by ¹H‐NMR, ¹³C‐NMR, IR, and elemental analysis. In addition, the crystal structure of the compound 2‐(1,5‐diphenyl‐1H‐pyrazol‐3‐yloxy)‐1‐(2‐thioxothiazolidin‐3‐yl)ethanone was determined by single crystal X‐ray diffraction analysis. Bioassay results indicated that the compound 2‐(5‐(4‐chlorophenyl)‐1‐phenyl‐1H‐pyrazol‐3‐yloxy)‐1‐(2‐thioxo‐thiazolidin‐3‐yl)ethanone exhibited moderate inhibitory activity against Gibberella zeae at the dosage of 10 μg mL^?1.     

Syntheses,antitumor activities,and antiangiogenesis of exo‐3,6‐epoxy‐1,2,3,6‐tetrahydrophthalimidoethanoyl‐ 5‐fluorouracil and its polymers

A new monomer, exo‐3,6‐epoxy‐1,2,3,6‐tetrahydrophthalimidoethanoyl‐5‐fluorouracil (ETFU), was synthesized by the reaction of exo‐3,6‐epoxy‐1,2,3,6‐tetrahydrophthalimidoethanoyl chloride (ETPC) and 5‐fluorouracil (5‐FU). The homopolymer of ETFU and its copolymers with acrylic acid (AA) and vinyl acetate (VAc) were prepared via photopolymerizations with 2,2‐dimethoxy‐2‐phenylacetophenone at 25 °C for 48 h. The structures of the synthesized monomer and polymers were identified by Fourier transform infrared, ¹H NMR, and ¹³C NMR spectroscopy and elemental analysis. The ETFU contents in poly(ETFU‐co‐AA) and poly(ETFU‐co‐VAc) were 26 mol % and 26 mol %, respectively. The number‐average molecular weights of the polymers, as determined by gel permeation chromatography, ranged from 5600 to 17,000. The in vitro cytotoxicities of 5‐FU and the synthesized samples against mouse mammary carcinoma and human histiocytic lymphoma cancer cell lines increased in the following order: ETFU > 5‐FU > poly(ETFU‐co‐AA) > poly(ETFU) > poly(ETFU‐co‐VAc). The in vivo antitumor activities of the polymers against Balb/C mice bearing the sarcoma 180 tumor cells were greater than those of 5‐FU at all doses tested. The inhibitions of the samples for SV40 DNA replication and antiangiogenesis were much greater than the inhibition of the control. © 2000 John Wiley & Sons, Inc. J Polym Sci A: Polym Chem 38: 4272–4281, 2000