Formation and stability of molybdenum-tellurium oxides MoTeO5, Mo2TeO8, Mo3TeO11 and MoTe2O7 in the gas phase. Quantum chemical and mass spectrometry determination of standard enthalpy of formation

The formation of mixed molybdenum-tellurium oxides MoTeO5, Mo2TeO8, Mo3TeO11, MoTe2O7 in the gas phase has been studied by mass spectrometry (MS) experiments at temperatures of about 938 K and studied theoretically by quantum chemical (QC) methods. Structural and thermodynamic data for the molecules was calculated. The mixed oxides MoTeO5, Mo2TeO8, Mo3TeO11 and MoTe2O7 in the gas phase have been reported for the first time. Experimental thermodynamic data have been determined by means of MS and confirmed theoretically by DFT and ab initio (MP2) calculations. Adiabatic ionisation potentials (IPs) were obtained experimentally and compared with theoretical vertical ionisation potentials. The following values are given: Δ(f)H(298)(0) (MoTeO5) = ?730.2 kJ mol(?1) (MS), Δ(f)H(298)(0) (MoTeO5) = ?735.4 kJ mol(?1) (DFT), ?717.3 kJ mol(?1) (MP2), S(298)(0) (MoTeO5) = 389.5 J mol(?1) K(?1) (DFT), c(p)(0)(T)(MoTeO5) = 141.71 + 13.54 × 10(?3)T ? 2.53 × 10(6)T(?2) J mol(?1) K(?1) (298 < T < 940 K) (DFT), Δ(f)H(298)(0) (Mo2TeO8) = ?1436.3 kJ mol(?1) (MS), Δ(f)H(298)(0) (Mo2TeO8) = ?1436.1 kJ mol(?1) (DFT), ?1455.9 kJ mol(?1) (MP2), S(298)(0) (Mo2TeO8) = 517.1 J mol(?1) K(?1) (DFT), c(p)(0)(T)(Mo2TeO8) = 228.64 + 24.15 × 10(?3)T ? 4.09 × 10(6)T(?2) J mol(?1) K(?1) (298 < T < 940 K) (DFT), Δ(f)H(298)(0) (Mo3TeO11) = ?2132.7 kJ mol(?1) (MS), Δ(f)H(298)(0) (Mo3TeO11) = ?2110.7 kJ mol(?1) (DFT), ?2163.2 kJ mol(?1) (MP2), S(298)(0) (Mo3TeO11) = 629.3 J mol(?1) K(?1) (DFT), c(p)(0)(T)(Mo3TeO11) = 316.40 + 34.10 × 10(?3)T ? 5.74 × 10(6)T(?2) J mol(?1) K(?1) (298 < T < 940 K) (DFT), Δ(f)H(298)(0) (MoTe2O7) = ?999.7 kJ mol(?1) (MS), Δ(f)H(298)(0) (MoTe2O7) = ?1002.7 kJ mol(?1) (DFT), ?1000.9 kJ mol(?1) (MP2), S(298)(0) (MoTe2O7) = 504.8 J mol(?1) K(?1) (DFT), c(p)(0)(T)(MoTe2O7) = 211.19 + 18.02 × 10(?3)T ? 3.53 × 10(6)T(?2) J mol(?1) K(?1) (298 < T < 940 K) (DFT), IP(MoTeO5) = 10.68 eV (DFT), IP(Mo2TeO8) = 10.4 ± 0.5 eV (MS), IP(Mo2TeO8) = 10.41 eV (DFT), IP(Mo3TeO11) = 10.7 ± 0.5 eV (MS), IP(Mo3TeO11) = 10.18 eV (DFT), IP(MoTe2O7) = 9.91 eV (DFT).     

Nitrosation, thiols, and hemoglobin: energetics and kinetics

Nitrosothiols are powerful vasodilators. Although the mechanism of their formation near neutral pH is an area of intense research, neither the energetics nor the kinetics of this reaction or of subsequent reactions have been addressed. The following considerations may help to guide experiments. (1) The standard Gibbs energy for the homolysis reaction RSNO → RS(?) + NO(?)(aq) is +110 ± 5 kJ mol(-1). (2) The electrode potential of the RSNO, H(+)/RSH, NO(?)(aq) couple is -0.20 ± 0.06 V at pH 7. (3) Thiol nitrosation by NO(2)(-) is favorable by 37 ± 5 kJ mol(-1) at pH 7. (4) N(2)O(3) is not involved in in vivo nitrosation mechanisms for thermodynamic--its formation from NO(2)(-) costs 59 kJ mol(-1)--or kinetic--the reaction being second-order in NO(2)(-)--reasons. (5) Hemoglobin (Hb) cannot catalyze formation of N(2)O(3), be it via the intermediacy of the reaction of Hb[FeNO(2)](2+) with NO(?) (+81 kJ mol(-1)) or reaction of Hb[FeNO](3+) with NO(2)(-) (+88 kJ mol(-1)). (6) Energetically and kinetically viable are nitrosations that involve HNO(2) or NO(?) in the presence of an electron acceptor with an electrode potential higher than -0.20 V. These considerations are derived from existing thermochemical and kinetics data.     

Structural and mechanistic information on the nitrosation of model Fe(II) complexes containing a biomimetic S4N chelate

In order to provide insight into the reaction pathways of nitrogen oxide redox species with [Fe-S] models that may parallel those existing in biology, the reactivity of the iron-sulfur species, {[Fe(II)(S(4)NEt(2)N)]}(2) (1) and [Fe(II)(CH(3)CN)(S(4)NEt(2)N)] (2), where (S(4)NEt(2)N)(2-) = 2,6-bis(2-mercaptophenylthiomethyl)-4-diethylaminopyridine(2-), towards NO(+) (nitrosation) has been studied mechanistically in acetonitrile and compared with the corresponding reactions with NO (nitrosylation). For the nitrosation of 1, the reaction takes place in two steps that correspond to the nitrosation of the mononuclear (2) and dinuclear (1) complexes, respectively. For the corresponding carbonyl complex [Fe(II)(CO)(S(4)NEt(2)N)] (3), the nitrosation reaction occurs in a single step. The relative reactivity of the iron-sulfur species is approximately (1)/(2)/(3) = 1/20/10. Activation parameters for the nitrosation of 1 (ΔH(#) = 27 ± 1 kJ mol(-1), ΔS(#) = -111 ± 2 J K(-1) mol(-1), and ΔV(#) = -19 ± 2 cm(3) mol(-1)), 2 (ΔH(#) = 46 ± 2 kJ mol(-1), ΔS(#) = -22 ± 7 J K(-1) mol(-1), and ΔV(#) = -9.7 ± 0.4 cm(3) mol(-1)) and 3 (ΔH(#) = 38 ± 1 kJ mol(-1), ΔS(#) = -44 ± 4 J K(-1) mol(-1), and ΔV(#) = -7.8 ± 0.3 cm(3) mol(-1)) were determined from variable temperature and pressure studies. The significantly negative ΔS(#) and ΔV(#) values found for the nitrosation reactions are consistent with an associative mechanism. A comparative study of the reactivity of the iron-sulfur species 1 to 3 towards NO(+) and NO is presented.     

Kinetic analysis of one-step solid-state reaction for Li4Ti5O12/C

The kinetics of one-step solid-state reaction of Li(4)Ti(5)O(12)/C in a dynamic nitrogen atmosphere was first studied by means of thermogravimetric-differential thermal analysis technique at five different heating rates. According to the double equal-double steps method, the Li(4)Ti(5)O(12)/C solid-state reaction mechanism could be properly described as the Jander equation, which was a three-dimensional diffusion with spherical symmetry, and the reaction mechanism functions were listed as follows: f(α) = (3)/(2)(1 - α)(2/3)[1 - (1 - α)(1/3)](-1), G(α) = [1 - (1 - α)(1/3)](2). In FWO method, average activation energy, frequency factor, and reaction order were 284.40 kJ mol(-1), 2.51 × 10(18) min(-1), and 1.01, respectively. However, the corresponding values in FRL method were 271.70 kJ mol(-1), 1.00 × 10(17) min(-1), and 0.96, respectively. Moreover, the values of enthalpy of activation, Gibbs free energy of activation, and entropy of activation at the peak temperature were 272.06 kJ mol(-1), 240.16 kJ mol(-1), and 44.24 J mol(-1) K(-1), respectively.     

The OH* + CH3SH reaction: support for an addition-elimination mechanism from ab initio calculations

Several intermediates for the CH(3)SH + OH(*) --> CH(3)S(*) + H(2)O reaction were identified using MP2(full) 6-311+g(2df,p) ab initio calculations. An adduct, CH(3)S(H)OH(*), I, with electronic energy 13.63 kJ mol(-1) lower than the reactants, and a transition state, II(double dagger), located 5.14 kJ mol(-1) above I, are identified as the entrance channel for an addition-elimination reaction mechanism. After adding zero-point and thermal energies, DeltaH(r,298) ( degrees )(reactants --> I) = -4.85 kJ mol(-1) and DeltaH(298) (double dagger)(I --> II(double dagger)) = +0.10 kJ mol(-1), which indicates that the potential energy surface is broad and flat near the transition state. The calculated imaginary vibrational frequency of the transition state, 62i cm(-1), is also consistent with an addition-elimination mechanism. These calculations are consistent with experimental observations of the OH(*) + CH(3)SH reaction that favored an addition-elimination mechanism rather than direct hydrogen atom abstraction. An alternative reaction, CH(3)SH + OH(*) --> CH(3)SOH + H(*), with DeltaH(r,298) ( degrees ) = +56.94 kJ mol(-1) was also studied, leading to a determination of DeltaH(f,298) ( degrees )(CH(3)SOH) = -149.8 kJ mol(-1).     

Rates and mechanism of fluoride and water exchange in UO(2)F(5)(3-) and [UO(2)F(4)(H(2)O)](2-) studied by NMR spectroscopy and wave function based methods

The reaction mechanism for the exchange of fluoride in UO(2)F(5)(3-) and UO(2)F(4)(H(2)O)(2-) has been investigated experimentally using (19)F NMR spectroscopy at -5 degrees C, by studying the line broadening of the free fluoride, UO(2)F(4)(2-)(aq) and UO(2)F(5)(3-), and theoretically using quantum chemical methods to calculate the activation energy for different pathways. The new experimental data allowed us to make a more detailed study of chemical equilibria and exchange mechanisms than in previous studies. From the integrals of the different individual peaks in the new NMR spectra, we obtained the stepwise stability constant K(5) = 0.60 +/- 0.05 M(-1) for UO(2)F(5)(3-). The theoretical results indicate that the fluoride exchange pathway of lowest activation energy, 71 kJ/mol, in UO(2)F(5)(3-) is water assisted. The pure dissociative pathway has an activation energy of 75 kJ/mol, while the associative mechanism can be excluded as there is no stable UO(2)F(6)(4-) intermediate. The quantum chemical calculations have been made at the SCF/MP2 levels, using a conductor-like polarizable continuum model (CPCM) to describe the solvent. The effects of different model assumptions on the activation energy have been studied. The activation energy is not strongly dependent on the cavity size or on interactions between the complex and Na(+) counterions. However, the solvation of the complex and the leaving fluoride results in substantial changes in the activation energy. The mechanism for water exchange in UO(2)F(4)(H(2)O)(2-) has also been studied. We could eliminate the associative mechanism, the dissociative mechanism had the lowest activation energy, 39 kJ/mol, while the interchange mechanism has an activation energy that is approximately 50 kJ/mol higher.     

C-H bond activation by a ferric methoxide complex: modeling the rate-determining step in the mechanism of lipoxygenase.

Lipoxygenases are mononuclear non-heme iron enzymes that regio- and stereospecifcally convert 1,4-pentadiene subunit-containing fatty acids into alkyl peroxides. The rate-determining step is generally accepted to be hydrogen atom abstraction from the pentadiene subunit of the substrate by an active ferric hydroxide species to give a ferrous water species and an organic radical. Reported here are the synthesis and characterization of a ferric model complex, [Fe(III)(PY5)(OMe)](OTf)(2), that reacts with organic substrates in a manner similar to the proposed enzymatic mechanism. The ligand PY5 (2,6-bis(bis(2-pyridyl)methoxymethane)pyridine) was developed to simulate the histidine-dominated coordination sphere of mammalian lipoxygenases. The overall monoanionic coordination provided by the endogenous ligands of lipoxygenase confers a strong Lewis acidic character to the active ferric site with an accordingly positive reduction potential. Incorporation of ferrous iron into PY5 and subsequent oxidation yields a stable ferric methoxide species that structurally and chemically resembles the proposed enzymatic ferric hydroxide species. Reactivity with a number of hydrocarbons possessing weak C-H bonds, including a derivative of the enzymatic substrate linoleic acid, scales best with the substrates' bond dissociation energies, rather than pK(a)'s, suggesting a hydrogen atom abstraction mechanism. Thermodynamic analysis of [Fe(III)(PY5)(OMe)](OTf)(2) and the ferrous end-product [Fe(II)(PY5)(MeOH)](OTf)(2) estimates the strength of the O-H bond in the metal bound methanol in the latter to be 83.5 +/- 2.0 kcal mol(-1). The attenuation of this bond relative to free methanol is largely due to the high reduction potential of the ferric site, suggesting that the analogously high reduction potential of the ferric site in LO is what allows the enzyme to perform its unique oxidation chemistry. Comparison of [Fe(III)(PY5)(OMe)](OTf)(2) to other coordination complexes capable of hydrogen atom abstraction shows that, although a strong correlation exists between the thermodynamic driving force of reaction and the rate of reaction, other factors appear to further modulate the reactivity.     

C-F activation of fluorinated arenes using NHC-stabilized nickel(0) complexes: selectivity and mechanistic investigations

The reaction of [Ni2((i)Pr2Im)4(COD)] 1a or [Ni((i)Pr2Im)2(eta(2)-C2H4)] 1b with different fluorinated arenes is reported. These reactions occur with a high chemo- and regioselectivity. In the case of polyfluorinated aromatics of the type C6F5X such as hexafluorobenzene (X = F) octafluorotoluene (X = CF3), trimethyl(pentafluorophenyl)silane (X = SiMe3), or decafluorobiphenyl (X = C6F5) the C-F activation regioselectively takes place at the C-F bond in the para position to the X group to afford the complexes trans-[Ni((i)Pr2Im)2(F)(C6F5)]2, trans-[Ni((i)Pr2Im)2(F)(4-(CF3)C6F4)] 3, trans-[Ni((i)Pr2Im)2(F)(4-(C6F5)C6F4)] 4, and trans-[Ni((i)Pr2Im)2(F)(4-(SiMe3)C6F4)] 5. Complex 5 was structurally characterized by X-ray diffraction. The reaction of 1a with partially fluorinated aromatic substrates C6H(x)F(y) leads to the products of a C-F activation trans-[Ni((i)Pr2Im)2(F)(2-C6FH4)] 7, trans-[Ni((i)Pr2Im)2(F)(3,5-C6F2H3)] 8, trans-[Ni((i)Pr2Im)2(F)(2,3-C6F2H3)] 9a and trans-[Ni((i)Pr2Im)2(F)(2,6-C6F2H3)] 9b, trans-[Ni((i)Pr2Im)2(F)(2,5-C6F2H3)] 10, and trans-[Ni((i)Pr2Im)2(F)(2,3,5,6-C6F4H)] 11. The reaction of 1a with octafluoronaphthalene yields exclusively trans-[Ni((i)Pr2Im)2(F)(1,3,4,5,6,7,8-C10F7)] 6a, the product of an insertion into the C-F bond in the 2-position, whereas for the reaction of 1b with octafluoronaphthalene the two isomers trans-[Ni((i)Pr2Im)2(F)(1,3,4,5,6,7,8-C10F7)] 6a and trans-[Ni((i)Pr2Im)2(F)(2,3,4,5,6,7,8-C10F7)] 6b are formed in a ratio of 11:1. The reaction of 1a or of 1b with pentafluoropyridine at low temperatures affords trans-[Ni((i)Pr2Im)2(F)(4-C5NF4)] 12a as the sole product, whereas the reaction of 1b performed at room temperature leads to the generation of trans-[Ni((i)Pr2Im)2(F)(4-C5NF4)] 12a and trans-[Ni((i)Pr2Im)2(F)(2-C5NF4)] 12b in a ratio of approximately 1:2. The detection of intermediates as well as kinetic studies gives some insight into the mechanistic details for the activation of an aromatic carbon-fluorine bond at the {Ni((i)Pr2Im)2} complex fragment. The intermediates of the reaction of 1b with hexafluorobenzene and octafluoronaphthalene, [Ni((i)Pr2Im)2(eta(2)-C6F6)] 13 and [Ni((i)Pr2Im)2(eta(2)-C10F8)] 14, have been detected in solution. They convert into the C-F activation products. Complex 14 was structurally characterized by X-ray diffraction. The rates for the loss of 14 at different temperatures for the C-F activation of the coordinated naphthalene are first order and the estimated activation enthalpy Delta H(double dagger) for this process was determined to be Delta H(double dagger) = 116 +/- 8 kJ mol(-1) (Delta S(double dagger) = 37 +/- 25 J K(-1) mol(-1)). Furthermore, density functional theory calculations on the reaction of 1a with hexafluorobenzene, octafluoronaphthalene, octafluorotoluene, 1,2,4-trifluorobenzene, and 1,2,3-trifluorobenzene are presented.     

Insertion reactions of dicyclohexylcarbodiimide with aminoboranes, -boryls and -borylenes

Insertion reactions of dicyclohexylcarbodiimide with aminoboranes and with aminoboryl and -borylene transition metal complexes have been examined as potential routes to new boron-containing ligand systems. Reactions with systems containing two-coordinate boron centres are found to be significantly more facile than those with three-coordinate substrates. Thus, reaction of (dicyclohexylamino)boron dichloride () with dicyclohexylcarbodiimide over 36 h at 50 degrees C generates the (structurally authenticated) guanidinate complex Cy(2)NC(NCy)(2)BCl(2) () via insertion into the BN bond. By contrast, the corresponding reaction with the cationic aminoborylene complex [CpFe(CO)(2)(BNCy(2))](+)[BAr(f)(4)](-) () proceeds rapidly at ca.-30 degrees C, via initial insertion into the FeB bond to give [CpFe(CO)(2)C(NCy)(2)BNCy(2)](+)[BAr(f)(4)](-) (). Consistent with related studies, a key factor in facilitating such insertion chemistry is thought to be the formation of an initial donor/acceptor complex between the diimide and the group 13 centre. Thus, DFT studies suggest that [CpFe(CO)(2)B(NCy(2))(CyNCNCy)](+)[BAr(f)(4)](-) is a potential intermediate in the reaction of with CyNCNCy, and that further reaction to give the observed product, , is strongly exergic (-183 kJ mol(-1)). By contrast, DFT calculations for the alternative isomer [CpFe(CO)(2)B(CyN)(2)CNCy(2)](+)[BAr(f)(4)](-) (), formed by BN insertion, suggest that it is 112 kJ mol(-1) less stable than . Such experimental and computational findings imply that under reaction conditions where a suitable isomerisation pathway is available, cationic complexes such as , which contain a four-membered boron-donor heterocycle are likely to be disfavoured with respect to alternative C-bound isomers.     

Chlorine dioxide reduction by aqueous iron(II) through outer-sphere and inner-sphere electron-transfer pathways

The reduction of ClO(2) to ClO(2)(-) by aqueous iron(II) in 0.5 M HClO(4) proceeds by both outer-sphere (86%) and inner-sphere (14%) electron-transfer pathways. The second-order rate constant for the outer-sphere reaction is 1.3 x 10(6) M(-1) s(-1). The inner-sphere electron-transfer reaction takes place via the formation of FeClO(2)(2+) that is observed as an intermediate. The rate constant for the inner-sphere path (2.0 x 10(5) M(-1) s(-1)) is controlled by ClO(2) substitution of a coordinated water to give an inner-sphere complex between ClO(2) and Fe(II) that very rapidly transfers an electron to give (Fe(III)(ClO(2)(-))(H(2)O)(5)(2+))(IS). The composite activation parameters for the ClO(2)/Fe(aq)(2+) reaction (inner-sphere + outer-sphere) are the following: DeltaH(r)++ = 40 kJ mol(-1); DeltaS(r)++ = 1.7 J mol(-1) K(-1). The Fe(III)ClO(2)(2+) inner-sphere complex dissociates to give Fe(aq)(3+) and ClO(2)(-) (39.3 s(-1)). The activation parameters for the dissociation of this complex are the following: DeltaH(d)++= 76 kJ mol(-1); DeltaS(d)++= 32 J K(-1) mol(-1). The reaction of Fe(aq)(2+) with ClO(2)(-) is first order in each species with a second-order rate constant of k(ClO2)- = 2.0 x 10(3) M(-1) s(-1) that is five times larger than the rate constant for the Fe(aq)(2+) reaction with HClO(2) in H(2)SO(4) medium ([H(+)] = 0.01-0.13 M). The composite activation parameters for the Fe(aq)(2+)/Cl(III) reaction in H(2)SO(4) are DeltaH(Cl(III))++ = 41 kJ mol(-1) and DeltaS(Cl(III))++ = 48 J mol(-1) K(-1).     

Kinetics and mechanisms of the unimolecular elimination of 2,2-diethoxypropane and 1,1-diethoxycyclohexane in the gas phase: experimental and theoretical study

The gas-phase thermal elimination of 2,2-diethoxypropane was found to give ethanol, acetone, and ethylene, while 1,1-diethoxycyclohexane yielded 1-ethoxycyclohexene and ethanol. The kinetics determinations were carried out, with the reaction vessels deactivated with allyl bromide, and the presence of the free radical suppressor cyclohexene and toluene. Temperature and pressure ranges were 240.1-358.3 °C and 38-102 Torr. The elimination reactions are homogeneous, unimolecular, and follow a first-order rate law. The rate coefficients are given by the following Arrhenius equations: for 2,2-diethoxypropane, log k(1) (s(-1)) = (13.04 ± 0.07) - (186.6 ± 0.8) kJ mol(-1) (2.303RT)(-1); for the intermediate 2-ethoxypropene, log k(1) (s(-1)) = (13.36 ± 0.33) - (188.8 ± 3.4) kJ mol(-1) (2.303RT)(-1); and for 1,1-diethoxycyclohexane, log k = (14.02 ± 0.11) - (176.6 ± 1.1) kJ mol(-1) (2.303RT)(-1). Theoretical calculations of these reactions using DFT methods B3LYP, MPW1PW91, and PBEPBE, with 6-31G(d,p) and 6-31++G(d,p) basis set, demonstrated that the elimination of 2,2-diethoxypropane and 1,1-diethoxycyclohexane proceeds through a concerted nonsynchronous four-membered cyclic transition state type of mechanism. The rate-determining factor in these reactions is the elongation of the C-O bond. The intermediate product of 2,2-diethoxypropane elimination, that is, 2-ethoxypropene, further decomposes through a concerted cyclic six-membered cyclic transition state mechanism.     

Transition state stabilization and substrate strain in enzyme catalysis: ab initio QM/MM modelling of the chorismate mutase reaction

To investigate fundamental features of enzyme catalysis, there is a need for high-level calculations capable of modelling crucial, unstable species such as transition states as they are formed within enzymes. We have modelled an important model enzyme reaction, the Claisen rearrangement of chorismate to prephenate in chorismate mutase, by combined ab initio quantum mechanics/molecular mechanics (QM/MM) methods. The best estimates of the potential energy barrier in the enzyme are 7.4-11.0 kcal mol(-1)(MP2/6-31+G(d)//6-31G(d)/CHARMM22) and 12.7-16.1 kcal mol(-1)(B3LYP/6-311+G(2d,p)//6-31G(d)/CHARMM22), comparable to the experimental estimate of Delta H(++)= 12.7 +/- 0.4 kcal mol(-1). The results provide unequivocal evidence of transition state (TS) stabilization by the enzyme, with contributions from residues Arg90, Arg7, and Arg63. Glu78 stabilizes the prephenate product (relative to substrate), and can also stabilize the TS. Examination of the same pathway in solution (with a variety of continuum models), at the same ab initio levels, allows comparison of the catalyzed and uncatalyzed reactions. Calculated barriers in solution are 28.0 kcal mol(-1)(MP2/6-31+G(d)/PCM) and 24.6 kcal mol(-1)(B3LYP/6-311+G(2d,p)/PCM), comparable to the experimental finding of Delta G(++)= 25.4 kcal mol(-1) and consistent with the experimentally-deduced 10(6)-fold rate acceleration by the enzyme. The substrate is found to be significantly distorted in the enzyme, adopting a structure closer to the transition state, although the degree of compression is less than predicted by lower-level calculations. This apparent substrate strain, or compression, is potentially also catalytically relevant. Solution calculations, however, suggest that the catalytic contribution of this compression may be relatively small. Consideration of the same reaction pathway in solution and in the enzyme, involving reaction from a 'near-attack conformer' of the substrate, indicates that adoption of this conformation is not in itself a major contribution to catalysis. Transition state stabilization (by electrostatic interactions, including hydrogen bonds) is found to be central to catalysis by the enzyme. Several hydrogen bonds are observed to shorten at the TS. The active site is clearly complementary to the transition state for the reaction, stabilizing it more than the substrate, so reducing the barrier to reaction.     

Influence of terpyridine as pi-acceptor ligand on the kinetics and mechanism of the reaction of NO with ruthenium(III) complexes

The kinetics of the unusually fast reaction of cis- and trans-[Ru(terpy)(NH3)2Cl]2+ (with respect to NH3; terpy=2,2':6',2"-terpyridine) with NO was studied in acidic aqueous solution. The multistep reaction pathway observed for both isomers includes a rapid and reversible formation of an intermediate Ru(III)-NO complex in the first reaction step, for which the rate and activation parameters are in good agreement with an associative substitution behavior of the Ru(III) center (cis isomer, k1=618 +/- 2 M(-1) s(-1), DeltaH(++) = 38 +/- 3 kJ mol(-1), DeltaS(++) = -63 +/- 8 J K(-1) mol(-1), DeltaV(++) = -17.5 +/- 0.8 cm3 mol(-1); k -1 = 0.097 +/- 0.001 s(-1), DeltaH(++) = 27 +/- 8 kJ mol(-1), DeltaS(++) = -173 +/- 28 J K(-1) mol(-1), DeltaV(++) = -17.6 +/- 0.5 cm3 mol(-1); trans isomer, k1 = 1637 +/- 11 M(-1) s(-1), DeltaH(++) = 34 +/- 3 kJ mol(-1), DeltaS(++) = -69 +/-11 J K(-1) mol(-1), DeltaV(++) = -20 +/- 2 cm3 mol(-1); k(-1)=0.47 +/- 0.08 s(-1), DeltaH(++)=39 +/- 5 kJ mol(-1), DeltaS(++) = -121 +/-18 J K(-1) mol(-1), DeltaV(++) = -18.5 +/- 0.4 cm3 mol(-1) at 25 degrees C). The subsequent electron transfer step to form Ru(II)-NO+ occurs spontaneously for the trans isomer, followed by a slow nitrosyl to nitrite conversion, whereas for the cis isomer the reduction of the Ru(III) center is induced by the coordination of an additional NO molecule (cis isomer, k2=51.3 +/- 0.3 M(-1) s(-1), DeltaH(++) = 46 +/- 2 kJ mol(-1), DeltaS(++) = -69 +/- 5 J K(-1) mol(-1), DeltaV(++) = -22.6 +/- 0.2 cm3 mol(-1) at 45 degrees C). The final reaction step involves a slow aquation process for both isomers, which is interpreted in terms of a dissociative substitution mechanism (cis isomer, DeltaV(++) = +23.5 +/- 1.2 cm3 mol(-1); trans isomer, DeltaV(++) = +20.9 +/- 0.4 cm3 mol(-1) at 55 degrees C) that produces two different reaction products, viz. [Ru(terpy)(NH3)(H2O)NO]3+ (product of the cis isomer) and trans-[Ru(terpy)(NH3)2(H2O)]2+. The pi-acceptor properties of the tridentate N-donor chelate (terpy) predominantly control the overall reaction pattern.     

Potential energy surface for activation of methane by Pt(+): a combined guided ion beam and DFT study

A guided-ion beam tandem mass spectrometer is used to study the reactions of Pt(+) with methane, PtCH(2)(+) with H(2) and D(2), and collision-induced dissociation of PtCH(4)(+) and PtCH(2)(+) with Xe. These studies experimentally probe the potential energy surface for the activation of methane by Pt(+). For the reaction of Pt(+) with methane, dehydrogenation to form PtCH(2)(+) + H(2) is exothermic, efficient, and the only process observed at low energies. PtH(+), formed in a simple C-H bond cleavage, dominates the product spectrum at high energies. The observation of a PtH(2)(+) product provides evidence that methane activation proceeds via a (H)(2)PtCH(2)(+) intermediate. Modeling of the endothermic reaction cross sections yields the 0 K bond dissociation energies in eV (kJ/mol) of D(0)(Pt(+)-H) = 2.81 +/- 0.05 (271 +/- 5), D(0)(Pt(+)-2H) = 6.00 +/- 0.12 (579 +/- 12), D(0)(Pt(+)-C) = 5.43 +/- 0.05 (524 +/- 5), D(0)(Pt(+)-CH) = 5.56 +/- 0.10 (536 +/- 10), and D(0)(Pt(+)-CH(3)) = 2.67 +/- 0.08 (258 +/- 8). D(0)(Pt(+)-CH(2)) = 4.80 +/- 0.03 eV (463 +/- 3 kJ/mol) is determined by measuring the forward and reverse reaction rates for Pt(+) + CH(4) right harpoon over left harpoon PtCH(2)(+) + H(2) at thermal energy. We find extensive hydrogen scrambling in the reaction of PtCH(2)(+) with D(2). Collision-induced dissociation (CID) of PtCH(4)(+), identified as the H-Pt(+)-CH(3) intermediate, with Xe reveals a bond energy of 1.77 +/- 0.08 eV (171 +/- 8 kJ/mol) relative to Pt(+) + CH(4). The experimental thermochemistry is favorably compared with density functional theory calculations (B3LYP using several basis sets), which also establish the electronic structures of these species and provide insight into the reaction mechanism. Results for the reaction of Pt(+) with methane are compared with those for the analogous palladium system and the differences in reactivity and mechanism are discussed.     

Strain-induced substitutional lability in a Ru(II) complex of a hypodentate polypyridine ligand

The ruthenium(II) complex of heptadentate N,N,N',N'-tetrakis(2-pyridylmethyl)-2,6-bis(aminomethyl)pyridine (tpap) was isolated as the hexafluorophosphate complex Ru(tpap)(PF6)2. The crystal structure has been determined for the triflate salt Ru(tpap)(CF3SO3)2.2H2O, which crystallizes in the monoclinic space group P2(1)/n. The structure was refined to a final R value of 0.0549 for 5894 observed reflections. The heptadentate ligand coordinates with six nitrogens, i.e. with two tertiary nitrogens and four pyridine nitrogens, one of the pyridines remaining un-coordinated. The resulting structure is significantly distorted from octahedral geometry with an equatorial Nsp3-Ru-Npyridine angle of 120 degrees. The consequence of the above steric strain is a labilization of the system and fluxional behaviour involving exchange between equatorially coordinated and non-coordinated pyridines has been observed by 1H NMR for Ru(tpap)(PF6)2 in d6-acetone solution. The activation parameters of DeltaG(not equal to 298) = 53 kJ mol(-1), DeltaH(not equal) = 56 +/- 1 kJ mol(-1) and DeltaS(not equal) = -10 +/- 3 J mol(-1) K(-1) were determined on the basis of NMR experiments. In addition electronic structure calculations applying density functional theory (DFT) have been performed in order to identify a transition state and to estimate the activation barrier. On the basis of NMR and DFT results the mechanism of isoexchange involving a hepta-coordinated intermediate has been proposed.     

Structure and reactivity of V(2)O(5): bulk solid, nanosized clusters, species supported on silica and alumina, cluster cations and anions

Vanadyl bond dissociation energies are calculated by density functional theory (DFT). While the hybrid (B3LYP) functional results are close to the available reference data, gradient corrected functionals (BP86, PBE) yield large errors (about 50 to 100 kJ mol(-1)), but reproduce trends correctly. PBE calculations on a V(20)O(62)H(24) cluster model for the (001) surface of V(2)O(5) crystals virtually reproduce periodic slab calculations. The low bond dissociation energy (formation of oxygen surface defect) of 113 kJ mol(-1)(B3LYP) is due to substantial structure relaxations leading to formation of V-O-V bonds between the V(2)O(5) layers of the crystal. This relaxation cannot occur in polyhedral (V(2)O(5))(n) clusters and also not for V(2)O(5) species supported on silica or alumina (represented by cage-type models) for which bond dissociation energies of 250-300 kJ mol(-1) are calculated. The OV(OCH(3))(3) molecule and its dimer are also considered. Radical cations V(2)O(5)(+) and V(4)O(10)(+) have very low bond dissociation energies (22 and 14 kJ mol(-1), respectively), while the corresponding radical anions have higher dissociation energies (about 330 kJ mol(-1)) than the neutral clusters. The bond dissociation energies of the closed shell V(3)O(7)(+) cation (165 kJ mol(-1)) and the closed shell V(3)O(8)(-) anion (283 kJ mol(-1)) are closest to the values of the neutral clusters. This makes them suitable for gas phase studies which aim at comparisons with V(2)O(5) species on supporting oxides.     

Triggering water exchange mechanisms via chelate architecture. Shielding of transition metal centers by aminopolycarboxylate spectator ligands

Paramagnetic effects on the relaxation rate and shift difference of the (17)O nucleus of bulk water enable the study of water exchange mechanisms on transition metal complexes by variable temperature and variable pressure NMR. The water exchange kinetics of [Mn(II)(edta)(H2O)](2-) (CN 7, hexacoordinated edta) was reinvestigated and complemented by variable pressure NMR data. The results revealed a rapid water exchange reaction for the [Mn(II)(edta)(H2O)](2-) complex with a rate constant of k(ex) = (4.1 +/- 0.4) x 10(8) s(-1) at 298.2 K and ambient pressure. The activation parameters DeltaH(double dagger), DeltaS(double dagger), and DeltaV(double dagger) are 36.6 +/- 0.8 kJ mol(-1), +43 +/- 3 J K(-1) mol(-1), and +3.4 +/- 0.2 cm(3) mol(-1), which are in line with a dissociatively activated interchange (I(d)) mechanism. To analyze the structural influence of the chelate, the investigation was complemented by studies on complexes of the edta-related tmdta (trimethylenediaminetetraacetate) chelate. The kinetic parameters for [Fe(II)(tmdta)(H2O)](2-) are k(ex) = (5.5 +/- 0.5) x 10(6) s(-1) at 298.2 K, DeltaH(double dagger) = 43 +/- 3 kJ mol(-1), DeltaS(double dagger) = +30 +/- 13 J K(-1) mol(-1), and DeltaV(double dagger) = +15.7 +/- 1.5 cm(3) mol(-1), and those for [Mn(II)(tmdta)(H2O)](2-) are k(ex) = (1.3 +/- 0.1) x 10(8) s(-1) at 298.2 K, DeltaH(double dagger) = 37.2 +/- 0.8 kJ mol(-1), DeltaS(double dagger) = +35 +/- 3 J K(-1) mol(-1), and DeltaV(double dagger) = +8.7 +/- 0.6 cm(3) mol(-1). The water containing species, [Fe(III)(tmdta)(H2O)](-) with a fraction of 0.2, is in equilibrium with the water-free hexa-coordinate form, [Fe(III)(tmdta)](-). The kinetic parameters for [Fe(III)(tmdta)(H2O)](-) are k(ex) = (1.9 +/- 0.8) x 10(7) s(-1) at 298.2 K, DeltaH(double dagger) = 42 +/- 3 kJ mol(-1), DeltaS(double dagger) = +36 +/- 10 J K(-1) mol(-1), and DeltaV(double dagger) = +7.2 +/- 2.7 cm(3) mol(-1). The data for the mentioned tmdta complexes indicate a dissociatively activated exchange mechanism in all cases with a clear relationship between the sterical hindrance that arises from the ligand architecture and mechanistic details of the exchange process for seven-coordinate complexes. The unexpected kinetic and mechanistic behavior of [Ni(II)(edta')(H2O)](2-) and [Ni(II)(tmdta')(H2O)](2-) is accounted for in terms of the different coordination number due to the strong preference for an octahedral coordination environment and thus a coordination equilibrium between the water-free, hexadentate [M(L)](n+) and the aqua-pentadentate forms [M(L')(H2O)](n+) of the Ni(II)-edta complex, which was studied in detail by variable temperature and pressure UV-vis experiments. For [Ni(II)(edta')(H2O)](2-) (CN 6, pentacoordinated edta) a water substitution rate constant of (2.6 +/- 0.2) x 10(5) s(-1) at 298.2 K and ambient pressure was measured, and the activation parameters DeltaH(double dagger), DeltaS(double dagger), and DeltaV(double dagger) were found to be 34 +/- 1 kJ mol(-1), -27 +/- 2 J K(-1) mol(-1), and +1.8 +/- 0.1 cm(3) mol(-1), respectively. For [Ni(II)(tmdta')(H2O)](2-), we found k = (6.4 +/- 1.4) x 10(5) s(-1) at 298.2 K, DeltaH(double dagger) = 22 +/- 4 kJ mol(-1), and DeltaS(double dagger) = -59 +/- 5 J K(-1) mol(-1). The process is referred to as a water substitution instead of a water exchange reaction, since these observations refer to the intramolecular displacement of coordinated water by the carboxylate moiety in a ring-closure reaction.     

Substrate specificity in enzymatic fluorination. The fluorinase from Streptomyces cattleya accepts 2'-deoxyadenosine substrates

The fluorinase enzyme from Streptomyces cattleya displays an unusual ability in biocatalysis in that it forms a C-F bond. We now report that the enzyme will accept 2'-deoxyadenosine in place of adenosine substrates, and structural evidence reveals a reorganisation in hydrogen bonding to accommodate this substrate series. It emerges from this study that the enzyme does not require a planar ribose conformation of the substrate to catalyse C-F bond formation.     

The fragmentation-recombination mechanism of the enzyme glutamate mutase studied by QM/MM simulations

The radical mechanism of the conversion of glutamate to methylaspartate catalyzed by glutamate mutase is studied with quantum mechanical/molecular mechanical (QM/MM) simulations based on density functional theory (DFT/MM). The hydrogen transfer between the substrate and the cofactor is found to be rate limiting with a barrier of 101.1 kJ mol(-1). A careful comparison to the uncatalyzed reaction in water is performed. The protein influences the reaction predominantly electrostatically and to a lesser degree sterically. Our calculations shed light on the atomistic details of the reaction mechanism. The well-known arginine claw and Glu 171 ( Clostridium cochlearium notation) are found to have the strongest influence on the reaction. However, a catalytic role of Glu 214, Lys 322, Gln 147, Glu 330, Lys 326, and Met 294 is found as well. The arginine claw keeps the intermediates in place and is probably responsible for the enantioselectivity. Glu 171 temporarily accepts a proton from the glutamyl radical intermediate and donates it back at the end of the reaction. We relate our results to experimental data when available. Our simulations lead to further understanding of how glutamate mutase catalyzes the carbon skeleton rearrangement of glutamate.     

Theoretical investigation of water gas shift reaction catalyzed by iron group carbonyl complexes M(CO)5 (M = Fe, Ru, Os)

We have investigated the mechanism of M(CO)(5) (M = Fe, Ru, Os) catalyzed water gas shift reaction (WGSR) by using density functional theory and ab initio calculations. Our calculation results indicate that the whole reaction cycle consists of six steps: 1 → 2 → 3 → 4 → 5 → 6 → 2. In this stepwise mechanism the metals Fe, Ru, and Os behave generally in a similar way. However, crucial differences appear in steps 3 → 4 → 5 which involve dihydride M(H)(2)(CO)(3)COOH(-) (4') and/or dihydrogen complex MH(2)(CO)(3)COOH(-) (4). The stability of the dihydrogen complexes becomes weaker down the iron group. The dihydrogen complex 4_Fe is only 11.1 kJ/mol less stable than its dihydride 4'_Fe at the B3LYP/II(f)++//B3LYP/II(f) level. Due to very low energy barrier it is very easy to realize the transform from 4_Fe to 4'_Fe and vice versa, and thus for Fe there is no substantial difference to differentiate 4 and 4' for the reaction cycle. The most possible key intermediate 4'_Ru is 38.2 kJ/mol more stable than 4_Ru. However, the barrier for the conversion 3_Ru → 4'_Ru is 23.8 kJ/mol higher than that for 3_Ru → 4_Ru. Additionally, 4'_Ru has to go through 4_Ru to complete dehydrogenation 4'_Ru → 5_Ru. The concerted mechanism 4'_Ru → 6_Ru, in which the CO group attacks ruthenium while H(2) dissociates, can be excluded. In contrast to Fe and Ru, the dihydrogen complex of Os is too unstable to exist at the level of theory. Moreover, we predict Fe and Ru species are more favorable than Os species for the WGSR, because the energy barriers for the 4 → 5 processes of Fe and Ru are only 38.9 and 16.2 kJ/mol, respectively, whereas 140.5 kJ/mol is calculated for the conversion 4' → 5 of Os, which is significantly higher. In general, the calculations are in good agreement with available experimental data. We hope that our work will be beneficial to the development and design of the WGSR catalyst with high performance.