Theory of the cooperative transition between two ordered conformations of poly(L-proline). II. Molecular theory in the absence of solvent.

Phenomenological theories of the transition between helical form I (cis peptide bond) and helical form II (trans peptide bond) of poly(-L-proline), which is a typical order in equilibrium order transition, have been presented by Schwarz (using the parameters s, sigma, beta', and beta' in a 2 X 2 matrix formulation) and by the present authors (using the parameters s, sigma betaC, and betaN in a 4 X 4 matrix formulation). A molecular theory of the same transition has been formulated to account for the phenomenological parameters. The statistical weights of regular helical sequences with and without junctions between the two forms were computed from empirical potential energy functions. Two puckering conformations of the pyrrolidine ring, i.e., with the Cgamma atom down and up, were allowed, and the free energy was computed for chains with four types of puckering, viz., regular down, regular up, random A, and random B, in the latter two of which the up and down puckerings were randomly distributed. The random A and random B chains have higher energy than those with regular down or up puckering, in both forms I and II. From both an energetical and a free energetical point of view, form I is more stable than form II under vacuum at room temperature. The dependence of the relative stabilities of form I and form II under vacuum on chain length was examined from both an energy and free energy point of view. The four parameters, s, sigma, beta', and beta', which describe the transitions in Schwarz's theory, were calculated from the statistical weights of various types of sequences. It was found that the thermally induced transition between form I and II under vacuum occurs with the pyrrolidine rings remaining in the down conformation. The calculated values of s suggest that form I is more stable than form II in the regular down chain, while form II is more stable than form I in the regular up chain under vacuum at room temperature. The calculated values of sigma for regular down and regular up pyrrolidine ring puckering are in good agreement with experimental observations, whereas those for random A and random B puckering are much smaller than the experimental values. A theory for the effect of solvent on the parameters s, sigma, beta', and beta' (at constant temperature) is developed, and the computations involving solvent effects are described in the next paper.     

Theory of the cooperative transition between two ordered conformations of poly(L-proline). I. Phenomenological theory.

The states of three residues are correlated in a nearest-neighbor Ising model matrix treatment of a one-dimensional phase transition, in which nucleation is assumed to differ at each end of a regular sequence (asymmetric nucleation). The correlation of the states of three residues requires a 4 X 4 matrix, which cannot be reduced in size because of the asymmetric nature of the nucleation. Also, because of the asymmetry, at least four independent parameters for a homopolymer (rather than the two usually encountered in the helix-coil transition), ant at least five for a specific-sequence copolymer, are required to describe the transition behavior. The most important current interest in such a treatment (for a homopolymer) is its applicability to the poly(L-proline) form I in equilibrium form II interconversion.The earlier treatment of Schwarz, using the nearest-neighbor Ising model (with correlation of only two residues), is identical with the above treatment, and requires only a 2 X 2 matrix which greatly simplifies numerical computations, which are presented in the next two papers of this series. However, the 4 X 4 matrix treatment is required in order to make the asymmetric nature of the nucleation explicit and physically understandable, for a homopolymer; for a specific-sequence copolymer, such as a protein, it is essential in order to show how the asymmetric nature of helix nucleation differs from one amino acid to another.     

聚乙烯醇/聚乙烯基吡咯烷酮共混体系相容性研究

用DSC、FTIR、SAXS和测定Flory-Huggins相互作用参数等方法对聚乙二醇(PVA1)/聚乙烯基吡咯烷酮(PVP)共混体系的研究。结果表明,该体系具有完全互容的性质。共混物只有一个玻璃化转变温度。用DMSO作溶剂浇铸的膜光学透明。PVA1的长周期和片晶厚度均随PVP含量增加而增大,但后者增大的幅度比前者小得多,表明PVP和PVA1的非晶部分形成均相并夹入到球晶内部。共混物中PVP羰基吸收峰和PVA1的羟基吸收峰与相应均聚物相比,在红外光谱图中皆向低频方向迁移,迁移波数随第二组分含量的增加而增大。表明二者间有氢键生成。用平衡熔点计算的Flory-Huggins相互作用参数为-0.88。     

Calculation of the characteristic ratio of randomly coiled poly(L-proline).

Allowing for rotation about the Calpha-C' bond (i.e., variation of psi) and for some degree of freedom about the peptide bond (i.e., small variations of omega), the characteristic ratios, (R2)o/nl2, of the form I (cis) and form II (trans) poly(L-proline) chain have been calculated by a Monte Carlo method in which the conformational energies were used as weighting factors. The Monte Carlo method enabled short-range interactions (beyond those involved in a single residue) to be taken into account. The effect of the presence of a small amount of one form (say cis in a trans-rich chain) on (R2)o/nl2 was also investigated. The results for the trans-rich form are in good agreement with values observed experimentally in solvents in which the poly(L-proline) chain is predominantly in form II; the presence of a small amount of cis residues reduces the characteristic ratio of the trans-rich form of poly(L-proline) significantly.     

Mutarotation of optically active poly(cis-5-ethyl-D-proline)

The mutarotation between form I and form II of poly(cis-5-ethyl-D -proline) has been experimentally realized. A number of hydrogen-bond-forming solvents have been found effective in initiating the mutarotational process. The rate of mutarotation seems to be proportional to the acidity of the active solvent. The enthalpy of activation energy for the mutarotation is estimated from the first-order kinetics at the lower conversion by means of the Arrhenius equation to be approximately 16.7 kcal/mol. The solvent-polymer interactions are proven to be one of the important driving forces for the mutarotation. The specific site at which hydrogen bonding takes place has been determined to be the carbonyl group of the amide by infrared spectroscopic techniques. The molecular reason for the greater susceptibility of poly(cis-5-ethyl-L -proline) II to the solvent effect than poly(cis-5-ethyl-L -proline) I can be satisfactorily explained by the relatively more extended structure of form I than form II. The mechanism for the mutarotation undoubtedly involves a cis-trans isomerization of the amide bond. The conformation of the transient states during the mutarotational process is still evidently helical in nature, probably consisting of long poly(cis-5-ethylproline) I and II segments.     

Oxidation of alcohol by lipopathic Cr(VI): a mechanistic study

The oxidation kinetics of various aliphatic primary and secondary alcohols having varied hydrocarbon chain length were studied using cetyltrimethylammonium dichromate (CTADC) in dichloromethane (DCM) in the presence of acetic acid and in the presence of a cationic surfactant. The rate of the reaction is highly sensitive to the change in [CTADC], [alcohol], [acid], [surfactant], polarity of the solvents, and reaction temperature. A Michaelis-Menten type kinetics was observed with respect to substrate. The chemical nature of the intermediate and the reaction mechanism were proposed on the basis of (i) observed rate constant dependencies on the reactants, that is, fractional order with respect to alcohol and acid and a negative order with respect to oxidant, (ii) high negative entropy change, (iii) inverse solvent kinetic isotope effect, k(H2O)/k(D2O) = 0.76, (iv) low primary kinetic isotope effect, kH/kD = 2.81, and (v) the k(obs) dependencies on solvent polarity parameters. The observed experimental data suggested the self-aggregation of CTADC giving rise to a reverse micellar system akin to an enzymatic environment, and the proposed mechanism involves the following: (i) formation of a complex between alcohol and the protonated dichromate in a rapid equilibrium, equilibrium constant K = 5.13 (+/-0.07) dm(3) mol(-1), and (ii) rate determining decomposition (k(2) = (7.6 +/- 0.7) x 10(-3) s(-1)) of the ester intermediate to the corresponding carbonyl compound. The effect of [surfactant] on the rate constant and the correlation of solvent parameters with the rate constants support the contribution of hydrophobic environment to the reaction mechanism.     

Determination of primary and secondary solvation numbers and binding constants based on the shift of a proton-transfer equilibrium resulting from hydrogen bonding solvation

We show how the shift in the equilibrium constant K _PT for formation of a proton-transfer adduct in a non-interactive solvent, upon addition of a second, hydrogen-bonding solvent S reveals the nature of the hydrogen bonding solvation process. Data are analyzed for the pentachlorophenoltriethylamine proton-transfer equilibrium in cyclohexane solvent, under-going solvation by the acidic alcohols, 2,2,2-trichloroethanol and 1,1,1,3,3,3-hexafluoro-2-propanol. K _PT vs. [S] data are fitted to a binding isotherm corresponding to two-stage solvation of both the adduct and the free amine. Stoichiometries and binding constants for both primary and secondary solvation of both solvated species are determined as adjustable parameters. Best fits correspond to both the adduct and free amine under-going primary solvation by one alcohol molecule (presumably at the oxygen and nitrogen lone-pairs, respectively) followed by secondary solvation by one to nine additional alcohol molecules, with binding constants ranging from 2100 M^–1, for primary solvation of the adduct by hexafluoro-2-propanol, down to 7 M^–1, for secondary solvation of the amine by trichloroethanol. We speculate that the secondary solvation numbers represent average sizes of hydrogen-bonded alcohol chains, nucleated by the enhanced basicity of the primary-solvation alcohol.     

助剂对L-脯氨酸催化直接不对称Aldol反应的影响

在L-脯氨酸催化的芳香醛与丙酮直接不对称aldol反应体系中添加二醇或二酚类助剂可有效提高反应活性.助剂的使用降低了该反应体系中L-脯氨酸的用量.特别是以邻苯二酚为助剂时,最佳反应条件下,仅用5mol％L-脯氨酸与1mol％助剂催化2-硝基苯甲醛与丙酮直接不对称aldol反应,aldol产物产率高达90％,对映选择性为...     

Spectroscopy and computations of supported metal adducts. 1. DFT Study of CO and NO adsorption and coadsorption on Cu/SiO2

Interactions of the CO and NO molecules with the Cu(II) and Cu(I) isolated sites on the amorphous silica surface are investigated by means of density functional theory (DFT) methods within the finite cluster model approach. The clusters of silica of increasing nT size (T = Si) are used, with n from 2 to 6. The Cu(II) sites are characterized by calculated g-tensors and hyperfine coupling constants (HFCCs) and compared with experiment. On this basis, the three-coordinated complexes are the most plausible. Due to the charge transfer from the silica "ligand", the metal charge shrinks and the spin density is distributed over silanol and siloxy groups up to 50%. The reduced sites are exclusively two-coordinated. Strong interaction of CO with Cu(I)-nT sites (31-39 kcal/mol) gives rise to the formation of carbonyl adducts with planar coordination around copper. The population of the ligand pi system shifts downward the stretching frequency in agreement with experiment. Reaction with a second CO molecule gives a geminal dicarbonyl of very uniform structure independent of the site. Carbonyl complexes with Cu(II) are less stable and of tetrahedral coordination of the metal. Accumulation of the positive charge on the complex along with sigma overlap with d orbitals locates the calculated CO stretching frequency above free molecule value. NO molecule is preferably bound to the Cu(II)-nT sites, forming a tetrahedral complex with tilted adsorbate and NO stretching frequency blue-shifted with respect to the free molecule value. The full set of electron paramagnetic resonance (EPR) parameters and vibrational frequencies for the copper(I) mononitrosyl, {CuNO}(11), though not observed experimentally, are predicted and compared to the same magnetophore inside the ZSM-5 zeolite. The interaction energies show that in the CO/NO reaction mixture adsorption is selective and allows discrimination between Cu(I) and Cu(II) sites. However, for the Cu(I) complex, formation of mixed-ligand structures of the {Cu(CO)(NO)}(11) type is possible.     

Reactions of trifluoroacetic acid with poly(vinyl alcohol) and its model compounds. Effect of neighboring hydroxyl groups on the reaction

Reactions of trifluoroacetic acid with poly(vinyl alcohol) and various model alcohols were investigated by observing the fluorine and the proton magnetic resonance spectra of the reaction mixtures. At equilibrium the degree of conversion to ester under given conditions decreased in the order isopropanol, pentane-2,4-diol, heptane-2,4,6-triol and poly(vinyl alcohol). Therefore the equilibrium constant for esterfication of a hydroxyl group is depressed by the presence of neighboring hydroxyl groups. It was observed that the steric structures of the models and polymers also affect the equilibrium position of the reaction and this is mainly ascribable to the fact that meso (isotactic) molecules react more slowly with the acid than do racemic (syndiotactic) molecules. In acid-catalyzed acetylation of the model alcohols with acetic acid no similar dependence on the steric configuration was found. Therefore trifluoroacetylation seems to be specific in this respect.     

Direct synthesis of ethers from aldehydes and ketones. One-pot reductive etherification of benzaldehydes,alkyl aryl ketones,and benzophenones

Benzyl alcohols formed by the reduction of benzaldehydes, alkyl aryl ketones, and benzophenones with sodium tetrahydridoborate in alcohols undergo in situ etherification with the solvent in the presence of a catalytic amount of HCl. Thus the process may be regarded as one-pot transformation of carbonyl compounds into the corresponding benzyl ethers. The yields of ethers depend on the substituent nature in the aromatic fragment of the initial carbonyl compound and on the alcohol used as reduction medium.     

On the thermodynamics of alcohol solutions. Phase equilibria of binary and ternary mixtures containing any number of alcohols

Nagata, I., 1985. On the thermodynamics of alcohol solutions. Phase equilibria of binary and ternary mixtures containing any number of alcohols. Fluid Phase Equilibria, 19: 153–174.Binary vapor—liquid and liquid—liquid equilibrium data for alcohol solutions includin one or two alcohols are correlated with the UNIQUAC associated solution theory (Nagata and Kawamura). The theory uses pure liquid association constants determined by the method of Brandani and a single value of the enthalpy of the hydrogen bond equal to ?23.2 kJ mol ^?1 for pure alcohols. For alcohol-active nonassociating component mixtures and alcohol—alcohol mixtures the theory involves additional solvation constants. The theory is extended to contain ternary mixtures with any number of alcohols. Ternary predictions of vapor—liquid and liquid—liquid equilibria are performed using only binary parameters. Good agreement is obtained between calculated and experimental results for many representative mixtures.     

Efficient NO equivalent for activation of molecular oxygen and its applications in transition-metal-free catalytic aerobic alcohol oxidation

tert-Butyl nitrite (TBN) was identified as an efficient NO equivalent for the activation of molecular oxygen. The unique property of TBN enabled TEMPO-catalyzed aerobic alcohol oxidation to be performed in high-volume efficiency. Up to a 16,000 turnover number was achieved in this transition-metal-free aerobic catalytic system. Under the optimal reaction conditions, various alcohols were converted into their corresponding carbonyl compounds with TEMPO/HBr/TBN as catalyst. The newly developed method was suitable for the oxidation of solid substrate alcohols with high melting point and/or low solubility under the help of minimum solvent to form a slurry.     

Syntheses of Theaspirone and Vitispirane via Palladium(II)-Catalyzed Oxaspirocyclization

Total syntheses of theaspirone (A and B) and vitispirane (A and B) are described. The key step in the syntheses is the palladium(II)-catalyzed intramolecular oxaspirocyclization of diene alcohol 4 to either vitispirane or the allylic alcohol 9. The outcome of the oxaspirocyclization is very much dependent on the solvent employed. In water-acetic acid (4:1) a 1:1 mixture of the diastereomeric alcohols 9A and 9B was exclusively formed. In water with 8 equiv of a strong non-nucleophilic acid, vitispiranes A and B (1:1) were obtained. An alternative procedure to obtain vitispirane with the use of LiCl and K(2)CO(3) is described. In the latter reaction vitispirane B is formed preferentially. This result is explained by an equilibrium between the two possible pi-allyl complexes 5A and 5B, the kinetically favored 5B being transformed into vitispirane 3B before isomerization to 5A occurs.     

Solution-phase photochemistry of a [FeFe]hydrogenase model compound: evidence of photoinduced isomerisation

The solution-phase photochemistry of the [FeFe] hydrogenase subsite model (μ-S(CH(2))(3)S)Fe(2)(CO)(4)(PMe(3))(2) has been studied using ultrafast time-resolved infrared spectroscopy supported by density functional theory calculations. In three different solvents, n-heptane, methanol, and acetonitrile, relaxation of the tricarbonyl intermediate formed by UV photolysis of a carbonyl ligand leads to geminate recombination with a bias towards a thermodynamically less stable isomeric form, suggesting that facile interconversion of the ligand groups at the Fe center is possible in the unsaturated species. In a polar or hydrogen bonding solvent, this process competes with solvent substitution leading to the formation of stable solvent adduct species. The data provide further insight into the effect of incorporating non-carbonyl ligands on the dynamics and photochemistry of hydrogenase-derived biomimetic compounds.     

Optosensing properties of fac-Re(CO)(3)(dpknph)Cl (dpknph=di-2-pyridyl ketone p-nitrophenyl hydrazone)

Optical and thermodynamic measurements on fac-Re(CO)(3)(dpknph)Cl in polar non aqueous solvents revealed the existence of two interlocked conformational forms for fac-Re(CO)(3)(dpknph)Cl. The equilibrium distribution of the low (alpha-) and high (beta-) energy conformations is solvent dependent, controlled by the dipole moment of the solvent molecules and their orientation around the total dipole of fac-Re(CO)(3)(dpknph)Cl. The interplay between the alpha- and beta-conformations of fac-Re(CO)(3)(dpknph)Cl, allowed calculations of their extinction coefficients, by forcing the equilibrium to shift to one conformation, using chemical stimuli. In DMSO and DMF extinction coefficients of 87 000+/-2000 and 35 000+/-2000 M(-1) cm(-1) were calculated for the beta- and alpha-conformations of fac-Re(CO)(3)(dpknph)Cl at lambda(max.), respectively. Thermo-optical measurements on fac-Re(CO)(3)(dpknph)Cl, allowed calculations of the activation parameters for the interconversion between the alpha- and beta-conformations of fac-Re(CO)(3)(dpknph)Cl. In DMSO and DMF changes in enthalpy (DeltaH(?)) of -11.2+/-1.3 and 10.9+/-0.5 kJmol(-1), entropy (DeltaS(?)) of -12.7+/-4.3 and 29.4+/-1.7 JK(-1) mol(-1), and free energy (DeltaG(?)) of -7.5+/-0.2 and+2.2+/-0.2 kJmol(-1) and hence equilibrium constants of 20.9+/-1.7 and 0.4+/-0.1 were calculated for fac-Re(CO)(3)(dpknph) at 295 K. The high values for the extinction coefficients and low values for the activation parameters for the interconversion between the alpha- and beta-conformations of fac-Re(CO)(3)(dpknph)Cl, in polar non aqueous solvents allowed the use of these systems as molecular sensors to probe their structural relaxation and interactions with their surroundings. These systems (fac-Re(CO)(3)(dpknph)Cl and surrounding solvent molecules) optically sense chemical and physical stimuli and their sensing power depends on the intensity and nature of these stimuli, i.e. the systems exhibit a high degree of sensitivity and selectivity.     

Study of the tautomerism of 4- and 2- carbalkoxy-3-thiophanones

The equilibrium positions of 4-carbomethoxy-3-thiophanone (I), 2-carbomethoxy-4-methyl-3-thiophanone (II), 4,5-dicarbomethoxy-3-thiophanone (III), and 4-carbethoxy-5-phenyl-3-thiophanone (IV) in acetonitrile, dioxane, and alcohols was determined. The Meyer equation is satisfied for ketones I and II paired with acetylacetone and for III and IV paired with methyl cyclopentanone-2-carboxylate in alcohol solutions.Translated from Khimiya Geterotsiklicheskikh Soedinenii, No. 11, pp. 1473–1480, November, 1971.     

Spectroscopic studies of 2-(2-bromo-ethyl)-6-nitro-benzo[de]isoquinolene-1,3-dione in water/alkanol mixed solvents and nonionic micelle of Igepal CO series

Spectroscopic studies of newly synthesized bioactive compound 2-(2-bromo-ethyl)-6-nitro-benzo[de]isoquinolene-1,3-dione (BNBIO) have been carried out in polar aprotic solvent, viz. acetonitrile, tetrahydrofuran, 1,4-dioxan, ethylene glycol, dimethyl formamide, and polar protic solvent, viz. methanol, ethanol, propanol, water. Variation in absorbance of BNBIO in water-methanol, water-ethanol and water-propanol mixtures at their different compositions have been observed. Absorption behaviour of the dye has been studied in poly(oxyethylene) nonylphenol surfactants Igepal CO 630, Igepal CO 720 and Igepal CO 890 containing same hydrophobic tail and different numbers of poly(oxyethylene) groups. Experimental results of the BNBIO nonionic micelles have been explained in terms of 1:1 electron donor-acceptor (EDA) complexation and the complexation equilibrium becomes suppressed with increasing number of poly(oxyethylene) residue on the Igepal surfactant. Variation in binding constant of dye-micelle complexation has been rationalized considering a competitive equilibrium process between the BNBIO-water interactions.     

Mutational analysis of human profilin I reveals a second PI(4,5)-P2 binding site neighbouring the poly(L-proline) binding site

Background

Profilin is a small cytoskeletal protein which interacts with actin, proline-rich proteins and phosphatidylinositol 4,5-bisphosphate (PI(4,5)-P₂). Crystallography, NMR and mutagenesis of vertebrate profilins have revealed the amino acid residues that are responsible for the interactions with actin and poly(L-proline) peptides. Although Arg88 of human profilin I was shown to be involved in PI(4,5)-P₂-binding, it was suggested that carboxy terminal basic residues may be involved as well.

Results

Using site directed mutagenesis we have refined the PI(4,5)-P₂ binding site of human profilin I. For each mutant we assessed the stability and studied the interactions with actin, a proline-rich peptide and PI(4,5)-P₂ micelles. We identified at least two PI(4,5)-P₂-binding regions in human profilin I. As expected, one region comprises Arg88 and overlaps with the actin binding site. The second region involves Arg136 in the carboxy terminal helix and neighbours the poly(L-proline) binding site. In addition, we show that adding a small protein tag to the carboxy terminus of profilin strongly reduces binding to poly(L-proline), suggesting local conformational changes of the carboxy terminal α-helix may have dramatic effects on ligand binding.

Conclusions

The involvement of the two terminal α-helices of profilin in ligand binding imposes important structural constraints upon the functions of this region. Our data suggest a model in which the competitive interactions between PI(4,5)-P₂ and actin and PI(4,5)-P₂ and poly(L-proline) regulate profilin functions.     

醇溶剂对羰基(C=O)紫外吸收的定量影响

以各种醇为溶剂测定了丙酮和环己酮的羰基紫外吸收能量△E,讨论了△E与醇分子结构的关系。结果表明△E与醇分子中烷基的极化效应指数PEI有良好的线性关系:△E=a bPEI