基于密度泛函理论的盐酸罂粟碱太赫兹振动光谱计算与分析（英文）

为了进一步探究太赫兹振动光谱的理论机理,为违禁药品的太赫兹光谱检测提供完善合理的科学依据,本文以盐酸罂粟碱为例,基于第一性原理的密度泛函理论计算方法,利用BLYP、LC-BLYP、B97-XD、B3LYP和CAM-B3LYP函数并结合6-311++G(d,p)基组,分别讨论其分子构象并对盐酸罂粟碱的光谱吸收特性和振动模式进行了表征和分析.计算结果表明,盐酸罂粟碱是以异喹啉N原子上的质子化阳离子和两个最低质子化构象的形式存在的.四个指纹峰中有三个是由能量最低的分子构象共振引起,另一个是由第二个最低能量的分子构象共振引起的.在该方法中,LC-BLYP函数被证明是五个函数中最合适的一个.研究表明,太赫兹时域光谱技术可以有效地检测非法药物,采用密度泛函理论合理计算振动频率,可以为今后违禁药品及各种衍生物的检验提供依据.     

对巯基苯胺分子构象和拉曼光谱的密度泛函理论研究

本文采用密度泛函方法B3LYP/6-311+G**计算了对巯基苯胺分子(PATP)的平衡结构和振动拉曼光谱。结果表明该分子有两个稳定构象,反式构象能更低。利用振动模分析所得的势能分布我们对该分子振动基频进行了归属,并计算了低能构象的标度振动频率,其结果与实验值相吻合。     

盐酸莱克多巴胺的太赫兹光谱研究

应用太赫兹时域光谱技术获取了盐酸莱克多巴胺在0.2～2.2 THz波段的光谱特征,并计算获得了盐酸菜克多巴胺在室温下的折射率谱和吸收谱.采用密度泛函理论对莱克多巴胺分子的结构和振动频率进行了模拟.根据理论计算和实验光谱的对比,采用Gatissian View3.09软件对莱克多巴胺分子的THz特征吸收峰进行了分析指认....     

1,4-萘醌的太赫兹,远红外及低频拉曼光谱研究

本文对1,4-萘醌进行了太赫兹时域光谱,远红外吸收光谱及低频拉曼散射谱的测试研究。1,4-萘醌的太赫兹吸收光谱与远红外谱仪测得的光谱取得了在1.75 THz(58.3 cm-1)/1.63 THz(54.3 cm-1)等处吸收峰位基本相同、两者相互佐证和补充的结果。将太赫兹和远红外吸收谱与低频拉曼散射谱进行比较,表明两种选择机制不同的光谱在1.04,1.72和4.59 THz等处的峰位基本重合,结合群论的不可约表示理论分析,表明该样品在低频波段具有拉曼活性和红外活性的振动属性(A1、B1或B2)。采用Gaussi-an03软件的密度泛函理论B3LYP函数和6-311基组模拟单分子红外与拉曼光谱,结合实验分析,对部分分子基团或原子振转模式给与了指认。     

除虫脲和高效氯氟氰菊酯的太赫兹光谱及密度泛函理论研究(英文)

利用太赫兹时域光谱技术及密度泛函理论对两种常用的卫生杀虫剂除虫脲和高效氯氟氰菊酯的低频振动光谱进行了研究。室温下观测到两种物质在0.2～2.2THz内的实验谱分别有5和7个吸收峰,可作为其在THz波段的指纹谱用于分子识别。为了深入理解太赫兹吸收峰的振动特性,我们采用Gaussi-an03和CRYSTAL09软件分别进行了单分子和晶体的密度泛函理论模拟。晶体模拟结果预测出两种物质在0.2～2.2THz实验谱中所有的吸收峰,明显优于单分子模拟结果。最后通过晶体密度泛函理论模拟的简正模式分析获得不同吸收峰处的振动模式归属。结果证明太赫兹光谱技术在农药分子识别以及晶体密度泛函理论模拟在太赫兹吸收峰指认和振动模式归属方面的可行性。     

全反式β-胡萝卜素太赫兹光谱的实验及理论研究

采用傅里叶变换红外光谱技术和太赫兹时域光谱技术,在室温下对全反式β-胡萝卜素薄膜进行了光谱测试.据此,详细地指认出全反式β-胡萝卜素在太赫兹波段的指纹谱峰,并验证了近期报道的棕树叶的太赫兹光谱结果.运用密度泛函理论的B3LYP方法计算了全反式β-胡萝卜素的太赫兹光谱,理论计算结果与实验测量结果基本符合.此外,根据理论计算结果,对实测的太赫兹特征峰的振动模式进行了系统归属.本文研究结果有助于推动有机物的太赫兹光谱规律和太赫兹响应原理等理论与应用研究.     

邻苯二甲酸酐分子振动光谱的实验和理论研究

分别在3500~100和3500~500cm-1范围内测量了邻苯二甲酸酐分子的拉曼和红外实验光谱,同时利用密度泛函理论中的B3LYP混合泛函方法和6-311G(d,p)基函数组,计算了该分子的平衡构型和振动频率,及其拉曼和红外光谱强度,结果表明:理论计算和实验结果较好的符合。最后采用简正振动分析方法得到了各振动模的能量分布,从而对该分子的振动频率归属做出了全面指认。     

2-巯基噻二唑的拉曼、红外光谱、DFT计算和简正振动分析

采用B3LYP混合泛函和6-311G基函数组,并对重原子和轻原子使用离散函数和极化函数,利用密度泛函理论计算了2-巯基噻二唑的分子振动频率。实验测量了2-巯基噻二唑分子的拉曼、红外光谱,以实验频率为标准对分子内力场进行了标度,采用简正振动分析方法得到了各振动模的势能分布,从而对该分子的振动频率归属做出了全面指认。     

有机官能团的太赫兹光谱特征研究

采用傅里叶远红外光谱仪(FTIR),在室温条件下测量了多种饱和直链有机小分子的太赫兹光谱。测试结果显示,有机官能团的差异导致有机物的太赫兹光谱特征显著不同。其中,有机物的晶格振动吸收峰和分子间氢键的振动吸收峰分别位于太赫兹高频和低频波段。而且,饱和直链一元醇的—OH官能团产生的分子间氢键的特征峰位于57 cm-1,而三十烷酸的—COOH官能团产生的分子间氢键的特征峰则位于74 cm-1。分子间氢键使三十烷醇和三十烷酸对太赫兹辐射的吸收能力明显地强于三十烷烃。相比于三十烷醇,三十烷酸的太赫兹特征峰还发生有规律的红移和蓝移现象。此外,还采用密度泛函理论B3LYP/6-311G(d, p)基组对饱和直链烷烃、烷醇和烷酸的太赫兹光谱进行了仿真计算,发现分子间氢键作用越强的有机物的单体分子的仿真结果与实测光谱的吻合程度越低。二聚体结构的仿真结果与实测光谱的吻合程度明显地高于单分子结构。研究结果对利用FTIR研究其他有机官能团的太赫兹光谱特征、探索有机分子内部的振动模式、探究有机物太赫兹响应的物理原理及器件应用等具有重要意义。     

TiO基态 (X 3 Δr) 的势能函数与光谱常数

应用群论及原子分子反应静力学方法推导了TiO分子基态(X³Δ_r)的离解极限.采用不同的计算方法,包括密度泛函B3LYP,B3P86,BP86,B3PW91和MP2,MP4方法,结合不同基组计算了TiO分子基态的平衡核间距、能量和振动频率.研究表明,使用B3LYP方法,对O原子使用6-311+G基组,Ti原子使用6-311+ +G^**基组时计算得到的平衡几何结构、分子离解能和谐振频率与实验值符合得最好.使用优选出的方法和基组对T 关键词： TiO 势能函数 光谱常数 密度泛函理论     

L-抗坏血酸的太赫兹波时域光谱研究

文章从理论分析和实验研究两方面探讨了L-抗坏血酸分子在0.2～2.4 THz波段的光谱特性。应用密度泛函理论的Becke-3-Lee-Yang-Parr(B3LYP)方法计算了L-抗坏血酸分子在THz波段的振动吸收谱,同时利用THz时域光谱系统(THz-TDS)测得了L-抗坏血酸在此波段的吸收谱和折射率谱。根据理论计算结果,借助于Gaussian View软件对L-抗坏血酸的THz吸收谱进行了指认。最后将L-抗坏血酸分子和市售维生素C药片的THz吸收谱进行了比较。研究表明,L-抗坏血酸分子在THz波段存在吸收峰,理论计算结果与实验结果符合较好,且这些吸收是由分子内和分子间振动共同引起的。与市售维生素C药片的吸收谱比较表明,L-抗坏血酸的吸收峰在维生素C药片的太赫兹吸收谱中均有反映。研究结果有助于进一步理解L-抗坏血酸的生物作用,为应用THz-TDS技术进行L-抗坏血酸的定量分析提供了依据。     

Vibrational investigation of 1-cyclopentylpiperazine: A combined experimental and theoretical study

FT-IR and Raman spectra of 1-cyclopentylpiperazine(1cppp)have been experimentally examined in the region of 4000–200cm-1.The optimized geometric parameters,conformational equilibria,normal mode frequencies and corresponding vibrational assignments of 1cppp(C9H18N2)are theoretically examined by means of B3LYP hybrid density functional theory(DFT)method together with 6-31++G(d,p)basis set.On the basis of potential energy distribution(PED)reliable vibrational assignments have been made and the thermodynamics functions,highest occupied and lowest unoccupied molecular orbitals(HOMO and LUMO)of 1cppp have been predicted.Calculations are employed for four different conformations in C1 and Cs point groups of 1cppp in gas phase.Comparison between the experimental and theoretical results indicates that B3LYP method is able to provide satisfactory results for predicting vibrational frequencies and the structural parameters,vibrational frequencies and assignments.Furthermore,C1(equatorial-axial)point group has been found as the most stable conformer of 1cppp.     

Computational Studies on the Ground State Tautomer,Hydrogen Conformations and Vibrational Spectroscopic Analysis of Antitumor Agents:3-Deazauracil and 6-Azauracil

The ground state hydrogen conformations and vibrational analysis of 3-deazauracil (3DAU) and 6-azauracil (6AU) tautomers (4-enol and 2,4-diol forms) have been calculated using ab initio Hartree-Fock (HF) and density functional theory (B3LYP) methods with 6-311++G(d,p) basis set level. The calculations have shown that the most probably preferential tautomer of 3DAU and 6AU are the 4-enol form, which gives best fit to the corresponding experimental data. The ground state conformer of the 2,4-diol form has two O-H bonds which are oriented externally and internally (to the N-H bond). The vibrational analyses of the ground state conformer of each tautomeric form of 3DAU and 6AU were done and their optimized geometry parameters (bond lengths and bond angles) were given. Furthermore, from the correlations values it was concluded that the B3LYP method is superior to the HF method for both the vibrational frequencies and the geometric parameters.     

Conformational stability and vibrational study of phenylacetyl chloride

The Fourier transform infrared spectroscopy and Fourier transform Raman spectra of phenylacetyl chloride were recorded and analyzed in the range 3500–400 and 3500–200 cm^?1 at room temperature, respectively. In order to obtain the structural information and conformational stabilities, a potential energy surface scan for internal rotation was carried out at the B3LYP/6‐31G(d) level. The potential energy surface reveals that the title compound has two minimal conformers (A and B). The optimized geometries, structural parameters, stabilities, energies, thermodynamic parameters, vibrational wavenumbers, infrared intensities, and Raman activities for the two conformers (A and B) have been obtained by employing B3LYP and MP2 calculations with 6‐311++G (d, p) basis sets. The conformational energy difference between A and B is very small, indicating that the B conformer coexists with the A conformer. The detailed vibrational assignments of vibrational spectra of each conformer have been made on the basis of the potential energy distributions analysis. The highest occupied molecular orbital –lowest unoccupied molecular orbital energy gap and molecular electrostatic potential of the two conformers have been also calculated for comparison of their chemical activities. Copyright © 2015 John Wiley & Sons, Ltd.     

Low-frequency vibrational modes of glutamine

High-resolution terahertz absorption and Raman spectra of glutamine in the frequency region 0.2 THz-2.8 THz are obtained by using THz time domain spectroscopy and low-frequency Raman spectroscopy. Based on the experimental and the computational results, the vibration modes corresponding to the terahertz absorption and Raman scatting peaks are assigned and further verified by the theoretical calculations. Spectral investigation of the periodic structure of glutamine based on the sophisticated hybrid density functional B3LYP indicates that the vibrational modes come mainly from the inter-molecular hydrogen bond in this frequency region.     

Synthesis and Vibrational Spectroscopic Investigation of Methyl L-Prolinate Hydrochloride: A Computational Insight

In our present work, methyl L-prolinate hydrochloride has been synthesized from L-proline amino acid and characterized by Fourier transform infrared and Fourier transform Raman spectra via experimental and computational methods. Ab initio Hartree-Fock and density functional theory (B3LYP) calculations have been made for the structure, and atomic charge distributions were also predicted for the title compound by using the 6-311++G(d,p) basis set. Predicted vibrational frequencies have been assigned and compared with experimental Fourier transform infrared and Fourier transform Raman spectra. The thermodynamic properties such as heat capacity, enthalpy, entropy, and Gibbs energy have been calculated at different temperatures. The calculated highest occupied molecular orbital and lowest unoccupied molecular orbital energy show the charge transfer behavior within the molecule.     

3-氨基-2,5-二氯苯甲酸振动光谱的密度泛函研究

为了本质地把握3-氨基-2,5-二氯苯甲酸(3A2,5DBA)的振动光谱和结构间的关系,在HF和B3LYP水平上利用6-311G(d,p)基组对3A2,5DBA进行了结构优化和振动频率的计算,得到了3A2,5DBA的结构信息和全部45个简正振动模式.通过与苯甲酸的结构参数以及相关文献数据的对比,发现B3LYP/6-311G(d,p)方法较HF/6-311G(d,p)方法能给出更加合理的结果.考虑到计算模拟分子和实验测量样品间的差异,对计算所得到的频率进行了合理的标度修正.在B3LYP/6-311G(d,p)方法下,对波数小于800cm-1的振动频率,标度因子取1.001 3,而波数大于800 cm-1的标度因子取0.961 3.借助Gaussian View程序包对所计算得到的振动模式进行了高精度指认,对3A2,5DBA的主要官能团及取代基团进行了振动分析.通过和实验测量的FTIR数据的比对,发现经标度修正后的计算结果和实验测量符合的很好.同时结合相关的文献报道,表明所做的振动指认和振动分析是合理的.     

Analysis of vibrational,structural, and electronic properties of rivastigmine by density functional theory

The present work deals with the structural, electronic, and vibrational analysis of rivastigmine. Rivastigmine, an antidementia medicament, is credited with significant therapeutic effects on the cognitive, functional, and behavioural problems that are commonly associated with Alzheimer’s dementia. For rivastigmine, a number of minimum energy conformations are possible. The geometry of twelve possible conformers has been analyzed and the most stable conformer was further optimized at a higher basis set. The electronic properties and vibrational frequencies were then calculated using a density functional theory at the B3LYP level with the 6-311+G(d, p) basis set. The different molecular surfaces have also been drawn to understand the activity of the molecule. A narrower frontier orbital energy gap in rivastigmine makes it softer and more reactive than water and dimethylfuran. The calculated value of the dipole moment is 2.58 debye.