Uncovering the Stoichiometry of Pyrococcus furiosus RNase P,a Multi‐Subunit Catalytic Ribonucleoprotein Complex,by Surface‐Induced Dissociation and Ion Mobility Mass Spectrometry

We demonstrate that surface‐induced dissociation (SID) coupled with ion mobility mass spectrometry (IM‐MS) is a powerful tool for determining the stoichiometry of a multi‐subunit ribonucleoprotein (RNP) complex assembled in a solution containing Mg²⁺. We investigated Pyrococcus furiosus (Pfu) RNase P, an archaeal RNP that catalyzes tRNA 5′ maturation. Previous step‐wise, Mg²⁺‐dependent reconstitutions of Pfu RNase P with its catalytic RNA subunit and two interacting protein cofactor pairs (RPP21?RPP29 and POP5?RPP30) revealed functional RNP intermediates en route to the RNase P enzyme, but provided no information on subunit stoichiometry. Our native MS studies with the proteins showed RPP21?RPP29 and (POP5?RPP30)₂ complexes, but indicated a 1:1 composition for all subunits when either one or both protein complexes bind the cognate RNA. These results highlight the utility of SID and IM‐MS in resolving conformational heterogeneity and yielding insights on RNP assembly.     

The multiple conformational charge states of zinc(II) coordination by 2His‐2Cys oligopeptide investigated by ion mobility‐mass spectrometry,density functional theory and theoretical collision cross sections

Whether traveling wave ion mobility‐mass spectrometry (IM‐MS), B3LYP/LanL2DZ density functional theory, and ion size scaled Lennard‐Jones (LJ) collision cross sections (CCS) from the B3LYP optimized structures could be used to determine the type of Zn(II) coordination by the oligopeptide acetyl‐His₁‐Cys₂‐Gly₃‐Pro₄‐Tyr₅‐His₆‐Cys₇ (amb₅) was investigated. The IM‐MS analyses of a pH titration of molar equivalents of Zn(II):amb₅ showed that both negatively and positively charged complexes formed and coordination of Zn(II) increased as the His and Cys deprotonated near their pKa values. The B3LYP method was used to generate a series of alternative coordination structures to compare with the experimental results. The method predicted that the single negatively charged complex coordinated Zn(II) in a distorted tetrahedral geometry via the 2His‐2Cys substituent groups, whereas, the double negatively charged and positively charged complexes coordinated Zn(II) via His, carbonyl oxygens and the C‐terminus. The CCS of the B3LYP complexes were calculated using the LJ method and compared with those measured by IM‐MS for the various charge state complexes. The LJ method provided CCS that agreed with five of the alternative distorted tetrahedral and trigonal bipyramidal coordinations for the doubly charged complexes, but provided CCS that were 15 to 31 Ų larger than those measured by IM‐MS for the singly charged complexes. Collision‐induced dissociation of the Zn(II) complexes and a further pH titration study of amb_5B, which included amidation of the C‐terminus, suggested that the 2His‐2Cys coordination was more significant than coordinations that included the C‐terminus. Copyright © 2016 John Wiley & Sons, Ltd.     

A Hydrogen‐Bonded Cyanide‐Bridged [Co2Fe2] Square Complex Exhibiting a Three‐Step Spin Transition

Co‐crystallization of a cyanide‐bridged tetranuclear complex [Co₂Fe₂] with 4‐cyanophenol (CP) gave a hydrogen bonding donor–acceptor system, [Co₂Fe₂(bpy*)₄(CN)₆(tp*)₂](PF₆)₂⋅2 CP⋅8 BN ( 1 ). 1 exhibited a three‐step phase transition between HT, IM1, IM2, and LT phases upon temperature variation. Variable temperature magnetic measurements and structural analyses revealed that the three‐step spin transition is caused by electron‐transfer‐coupled spin transitions (ETCSTs) accompanied with alteration of the hydrogen bonding interactions.     

pH‐Independent Recognition of the dG ⋅ dC Base Pair in Triplex DNA: 9‐Deazaguanine N7‐(2′‐Deoxyribonucleoside) and Halogenated Derivatives Replacing Protonated dC

Triplex-forming oligonucleotides (TFOs) containing 9-deazaguanine N⁷-(2′-deoxyribonucleoside) 1a and halogenated derivatives 1b,c were synthesized employing solid-phase oligonucleotide synthesis. For that purpose, the phosphoramidite building blocks 5a – c and 8a – c were synthesized. Multiple incorporations of 1a – c in place of dC were performed within TFOs, which involved the sequence of five consecutive 1a – c ⋅ dG ⋅ dC triplets as well as of three alternating 1a – c ⋅ dG ⋅ dC and dT ⋅ dA ⋅ dT triplets. These TFOs were designed to bind in a parallel orientation to the target duplex. Triplex forming properties of these oligonucleotides containing 1a – c in the presence of Na⁺ and Mg²⁺ were studied by UV/melting-curve analysis and confirmed by circular-dichroism (CD) spectroscopy. The oligonucleotides containing 1a in the place of dC formed stable triplexes at physiological pH in the case of sequence of five consecutive 1a ⋅ dG ⋅ dC triplets as well as three alternating 1a – c ⋅ dG ⋅ dC and dT ⋅ dA ⋅ dT triplets. The replacement of 1a by 9-halogenated derivatives 1b,c further enhanced the stability of DNA triplexes. Nucleosides 1a – c also stabilized duplex DNA.     

Direct Self‐Assembly of a 2D and 3D Star of David

Two‐ and three‐dimensional metallosupramolecules shaped like a Star of David were synthesized by the self‐assembly of a tetratopic pyridyl ligand with a 180° diplatinum(II) motif and Pd^II ions, respectively. In contrast to other strategies, such as template‐directed synthesis and stepwise self‐assembly, this design enables the formation of 2D and 3D structures in one step and high yield. The structures were characterized by both one‐dimensional (¹H, ¹³C, ³¹P) and two‐dimensional (COSY, NOESY, DOSY) NMR spectroscopy, ESI‐MS, ion‐mobility mass spectrometry (IM–MS), AFM, and TEM. The stabilities of the 2D and 3D structures were measured and compared by gradient tandem mass spectrometry (gMS²). The high stability of the 3D Star of David was correlated to its high density of coordination sites (DOCS).     

Molecular‐Dynamics Studies of Single‐Stranded Hexitol,Altritol, Mannitol,and Ribose Nucleic Acids (HNA,MNA, ANA,and RNA,Resp.) and of the Stability of HNA⋅RNA,ANA⋅RNA,and MNA⋅RNA Duplexes

The influence of the orientation of a 3′‐OH group on the conformation and stability of hexitol oligonucleotides in complexes with RNA and as single strands in aqueous solution was investigated by molecular‐dynamics (MD) simulations with AMBER 4.1. The particle mesh Ewald (PME) method was used for the treatment of long‐range electrostatic interactions. An equatorial orientation of the 3′‐OH group in the single‐stranded D ‐mannitol nucleic acid (MNA) m(GCGTAGCG) and in the complex with the RNA r(CGCAUCGC) has an unfavorable influence on the helical stability. Frequent H‐bonds between the 3′‐OH group and the O−C(6′) of the phosphate backbone of the following nucleotide explain the distorted conformation of the MNA⋅RNA complex as well as that of the single MNA strand. This is consistent with experimental results that show lowered hybridization potentials for MNA⋅RNA complexes. An axial orientation of the 3′‐OH group in the D ‐altritol nucleic acid (ANA) a(GCGTAGCG) leads to a stable complex with the complementary RNA r(CGCAUCGC), as well as to a more highly preorganized single‐stranded ANA chain. The averaged conformation of the ANA⋅RNA complex is similar to that of A‐RNA, with only minor changes in groove width, helical curvature, and H‐bonding pattern. The relative stabilities of ANA⋅RNA vs. HNA⋅RNA (HNA=D ‐hexitol nucleic acid without 3′‐OH group) can be explained by differences in restricted movements, H‐bonds, and solvation effects.     

meso‐Cumulenic 2H‐Corroles from meso‐Ethynyl‐3H‐corroles

Alkynyl‐substituted 3H‐corrole 9 a was converted to [3]cumulenic 2H‐corrole 10 a by treatment with trimethylsilyl chloride (TMSCl), and 1,3‐butadiyne‐bridged 3H‐corrole dimer 11 b was transformed into [5]cumulene‐bridged 2H‐corrole dimer 12 b by oxidation with PbO₂. Both 10 a and 12 b were metalated to form Zn^II complexes 10 a‐Zn and 12 b‐Zn . The structures of 10 a‐Zn and 12 b‐Zn show planar conformations with bond‐length alternations that are analogous to those of tetraaryl [n]cumulenes. The cumulenic corrole dimers 12 b and 12 b‐Zn display large NIR absorption bands in the range of 700–1400 nm (maximum ϵ≈1.0×10⁵ m ⁻¹ cm⁻¹) owing to the effective π‐conjugation between the two corrole units through the [5]cumulene bridge.     

Preparation,Structural Characterization,and Antifungal Activities of Complexes of Group 12 Metals with 2‐Acetylpyridine‐ and 2‐Acetylpyridine‐N‐oxide‐4N‐phenylthiosemicarbazones

Reaction of group 12 metal dihalides in ethanolic media with 2‐acetylpyridine ⁴N‐phenylthiosemicarbazone ( H4PL ) and 2‐acetylpyridine‐N‐oxide ⁴N‐phenylthiosemicarbazone ( H4PLO ) afforded the compounds [M(H4PL)X₂] (X = Cl, Br, M = Zn, Cd, Hg; X = I, M = Zn, Cd) ( 1–8 ), [Hg(4PL)I]₂ ( 9 ) and [M(H4PLO)X₂] (X = Cl, Br, I, M = Zn, Cd, Hg) ( 10–18 ). H4PL , H4PLO and their complexes were characterized by elemental analysis and by IR and ¹H and ¹³C NMR spectroscopy (and the cadmium complexes by ¹¹³Cd NMR spectroscopy), and H4PL , H4PLO , ( 5 · DMSO) and ( 9 ) were additionally studied by X‐ray diffraction. H4PL is N,N,S‐tridentate in all its complexes, including 9 , in which it is deprotonated, and H4PLO is in all cases O,N,S‐tridentate. In all the complexes, the metal atoms are pentacoordinate and the coordination polyhedra are redistorted tetragonal pyramids. In assays of antifungal activity against Aspergillus niger and Paecilomyces variotii, the only compound to show any activity was [Hg(H4PLO)I₂] ( 18 ).     

2, 4‐Dimethylpenta‐1, 3‐dien‐ und 2, 4‐Dimethylpentadienyl‐Komplexe des Rhodiums und Iridiums

2, 4‐Dimethylpenta‐1, 3‐diene and 2, 4‐Dimethylpentadienyl Complexes of Rhodium and Iridium The complexes [(η⁴‐C₇H₁₂)RhCl]₂ ( 1 ) (C₇H₁₂ = 2, 4‐dimethylpenta‐1, 3‐diene) and [(η⁴‐C₇H₁₂)₂IrCl] ( 2 ) were obtained by interaction of C₇H₁₂ with [(η²‐C₂H₄)₂RhCl]₂ and [(η²‐cyclooctene)₂IrCl]₂, respectively. The reaction of 1 or 2 with CpTl (Cp = η⁵‐C₅H₅) yields the compounds [CpM(η⁴‐C₇H₁₂)] ( 3a : M = Rh; 3b : M = Ir). The hydride abstraction at the pentadiene ligand of 3a , b with Ph₃CBF₄ proceeds differently depending on the solvent. In acetone or THF the “half‐open” metallocenium complexes [CpM(η⁵‐C₇H₁₁)]BF₄ ( 4a : M = Rh; 4b : M = Ir) are obtained exclusively. In dichloromethane mixtures are produced which additionally contain the species [(η⁵‐C₇H₁₁)M(η⁵‐C₅H₄CPh₃)]BF₄ ( 5a : M = Rh; 5b : M = Ir) formed by electrophilic substitution at the Cp ring, as well as the η³‐2, 4‐dimethylpentenyl compound [(η³‐C₇H₁₃)Rh{η⁵‐C₅H₃(CPh₃)₂}]BF₄ ( 6 ). By interaction of 2, 4‐dimethylpentadienyl potassium with 1 or 2 the complexes [(η⁴‐C₇H₁₂)M(η⁵‐C₇H₁₁)] ( 7a : M = Rh; 7b : M = Ir) are generated which show dynamic behaviour in solution; however, attempts to synthesize the “open” metallocenium cations [(η⁵‐C₇H₁₁)₂M]⁺ by hydride abstraction from 7a , b failed. The new compounds were characterized by elemental analysis and spectroscopically, 4b and 5a also by X‐ray structure analysis.     

Mono‐ and Binuclear Rhodium and Platinum Complexes of 1, 3, 5‐Trimethyl‐1, 3, 5‐triaza‐2σ3λ3‐phosphorin‐4, 6‐dionyloxy‐substituted Calix[4]arenes

The reaction behaviour of 1, 3, 5‐triaza‐2σ³λ³‐phosphorin‐4, 6‐dionyloxy‐substituted calix[4]arenes towards mono‐ and binuclear rhodium and platinum complexes was investigated. Special attention was directed to structure and dynamic behaviour of the products in solution and in the solid state. Depending on the molar ratio of the reactands, the reaction of the tetrakis(triazaphosphorindionyloxy)‐substituted calix[4]arene ( 4 ) and its tert‐butyl‐derivative ( 1 ) with [(cod)RhCl]₂ yielded the mono‐ and disubstituted binuclear rhodium complexes 2 , 3 , and 5 . In all cases, a C₂‐symmetrical structure was proved in solution, apparently caused by a fast intramolecular exchange process between cone conformation and 1, 3‐alternating conformation. The X‐ray crystal structure determination of 5 confirmed [(calixarene)RhCl]₂‐coordination through two opposite phosphorus atoms with a P ⃜P separation of 345 pm. The complex displays crystallographic inversion symmetry, and the Rh₂Cl₂ core is thus exactly planar. Reaction of 1 and of the bis(triazaphosphorindionyloxy)‐bis(methoxy)‐substituted tert‐butyl‐calix‐[4]arene ( 7 ) with (cod)Rh(acac) in equimolar ratio and subsequent reaction with HBF₄ led to the expected cationic monorhodium complexes 5 and 8 , involving 1, 3‐alternating P‐Rh‐P‐coordination. The cone conformation in solution was proved by NMR spectroscopy and characteristic values of the ¹J(PRh) coupling constants in the ³¹P‐NMR‐spectra. Reaction of equimolar amounts of 4 with (cod)Rh(acac) or (nbd)Rh(acac) led, by substitution of the labile coordinated acetylacetonato and after addition of HBF₄, to the corresponding mononuclear cationic complexes 9 and 10 . Only two of the four phosphorus atoms in 9 and 10 are coordinated to the central metal atom. Displacement of either cycloocta‐1, 5‐diene or norbornadiene was not observed. For both compounds, the cone conformation was proved by NMR spectroscopy. Reaction of 4 with (cod)PtCl₂ led to the PtCl₂‐complex ( 11 ). As for all compounds mentioned above, only two phosphorus atoms of the ligand coordinate to platinum, while two phosphorus atoms remain uncoordinated (proved by δ³¹P and characteristic values of ¹J(PPt)). NMR‐spectroscopic evidence was found for the existence of the cone conformation in the cis‐configuration of 11 .     

Studies on the Mass Spectra of Monocyclic N‐Aryl‐δ‐Valerolactams

The fragmental behavior of some monocyclic N‐aryl‐δ‐valerolactams in EI‐MS was studied. Their molecular ion peak, together with some characteristic fragments such as [M‐29]⁺, [M‐56]^+?, [M‐69]⁺, and [M‐98]⁺, were always found in a series of N‐aryl‐δ‐valerolactams in EI‐MS spectra. Furthermore, the mechanism for the interpretation of each fragment is described.     

Optically Active Hexaazamacrocycles: Protonation Behavior and Chiral‐Anion Recognition

The protonation features of two optically active 22‐membered hexaazamacrocycles possessing one ( L1 ) or two ( L2 ) (R,R)‐cyclohexane‐1,2‐diamine moieties have been studied by means of potentiometric ¹H‐ and ¹³C‐NMR techniques. This study allows the determination of the basicity constants and the stepwise protonation sites. The presence of the cyclohexane decreases the protonation ability, and this effect can be explained in terms of conformational and electrostatic factors. Binding of different chiral dicarboxylates has been studied by potentiometry. Macrocycle L2 presents higher anion‐complexation equilibrium constants than L1 . The stability of the diastereoisomeric complexes depends on the pH, and the structures of the macrocycles and anions. Receptor L1 ⋅6 H⁺ shows moderate D ‐selectivity towards tartrate anion, whereas L2 ⋅6 H⁺ exhibits a good preference for N‐Ac‐D ‐aspartate. Both protonated L1 and L2 form strong complexes with N‐Ac‐glutamate, and the stoichiometry of the complex depends on the degree of protonation and the absolute configuration of the anion. For this last anion, both azamacrocycles exhibit a clear D ‐preference.     

Regioisomer characterization of triacylglycerols by non‐aqueous reversed‐phase liquid chromatography/electrospray ionization mass spectrometry using silver nitrate as a postcolumn reagent

Triacylglycerols (TAGs) provide a challenge for mass spectrometry (MS) analysis because of their complexity. In particular, for dietary, nutritional and metabolic purposes, the positional placement of fatty acids on the glycerol backbone of TAGs is a crucial aspect. To solve this problem, we have investigated the TAGs' fragmentation patterns using an ion trap mass spectrometer. A series of pure regioisomeric pairs of TAGs (POP/PPO, POO/OPO and OSO/SOO) were cationized by Ag⁺ after their separation by non‐aqueous reversed‐phase liquid chromatography (NARP‐LC) before MS to improve MS sensitivity. Electrospray ionization–MS (ESI‐MS) conditions were optimized in order to produce characteristic [M + Ag + AgNO₃]⁺ ions from each TAG, which were then fragmented to produce MS/MS spectra and then fragmented further to produce up to MS⁵ spectra. The observation of ions produced by LC‐MS⁵ of on‐line Ag⁺‐cationized TAG provided unambiguous information on the fatty acid distribution on the glycerol backbone. These strategies of MS to MS⁵ experiments were applied to identify components and to determine the regiospecificity of TAG within a complex mixture of lipids in natural oils. Copyright © 2010 John Wiley & Sons, Ltd.     

Separation,Quantification and Structural Study of (+)‐Catechin and (–)‐Epicatechin by Ion Mobility Mass Spectrometry Combined with Theoretical Algorithms

Two catechin epimers and their non‐covalent complexes with γ‐cyclodextrin were studied by using ion mobility coupled with mass spectrometry (IM‐MS). Rapid separation of complexes was achieved with the peak‐to‐peak resolution reaching 0.86 after optimization of IM condition. Collision cross section (CCS) was measured to explore the structural difference of complexes. A gap of 11.75 Ų between two complexes was found. Molecular modeling and theoretical CCS calculation were adopted to explain the measurement results. Two binding ways of both complexes were found and the calculated CCS corresponds accurately to the measured CCS. Quantification of catechins in mixtures was performed and the relative error was less than 15%, indicating the effectiveness of quantification by IM‐MS.     

Variable Bonding Modes of Pyrimidine‐2‐thione in PdII/PtII Complexes [M(η2‐N,S‐pymS)(η1‐S‐pymS)(PPh3)] and [M(η1‐S‐pymS)2(L‐L)] (L‐L = dppm,dppe)

Reactions of pyrimidine‐2‐thione (HpymS) with Pd^II/Pt^IV salts in the presence of triphenyl phosphine and bis(diphenylphosphino)alkanes, Ph₂P‐(CH₂)_m‐PPh₂ (m = 1, 2) have yielded two types of complexes, viz. a) [M(η²‐N, S‐ pymS)(η¹‐S‐ pymS)(PPh₃)] (M = Pd, 1 ; Pt, 2 ), and (b) [M(η¹‐S‐pymS)₂(L‐L)] {L‐L, M = dppm (m = 1) Pd, 3 ; Pt, 4 ; dppe (m = 2), Pd, 5 ; Pt, 6 }. Complexes have been characterized by elemental analysis (C, H, N), NMR spectroscopy (¹H, ¹³C, ³¹P), and single crystal X‐ray crystallography ( 1 , 2 , 4 , and 5 ). Complexes 1 and 2 have terminal η¹‐S and chelating η²‐N, S‐modes of pymS⁻, while other Pd/Pt complexes have only terminal η¹‐S modes. The solution state ³¹P NMR spectral data reveal dynamic equilibrium for the complexes 3 , 5 and 6 , whereas the complexes 1 , 2 and 4 are static in solution state.     

Photophysical Analysis of 1,10‐Phenanthroline‐Embedded Porphyrin Analogues and Their Magnesium(II) Complexes

The synthesis, characterization, photophysical properties, and theoretical analysis of a series of tetraaza porphyrin analogues ( H? Pn : n=1–4) containing a dipyrrin subunit and an embedded 1,10‐phenanthroline subunit are described. The meso‐phenyl‐substituted derivative ( H? P1 ) interacts with a Mg²⁺ salt (e.g., MgCl₂, MgBr₂, MgI₂, Mg(ClO₄)₂, and Mg(OAc)₂) in MeCN solution, thereby giving rise to a cation‐dependent red‐shift in both the absorbance‐ and emission maxima. In this system, as well as in the other H? Pn porphyrin analogues used in this study, the four nitrogen atoms of the ligand interact with the bound magnesium cation to form Mg²⁺–dipyrrin–phenanthroline complexes of the general structure MgX? Pn (X=counteranion). Both single‐crystal X‐ray diffraction analysis of the corresponding zinc‐chloride derivative ( ZnCl? P1 ) and fluorescence spectroscopy of the Mg‐adducts that are formed from various metal salts provide support for the conclusion that, in complexes such as MgCl? P1 , a distorted square‐pyramidal geometry persists about the metal cation wherein a chloride anion acts as an axial counteranion. Several analogues ( H? Pn ) that contain electron‐donating and/or electron‐withdrawing dipyrrin moieties were prepared in an effort to understand the structure–property relationships and the photophysical attributes of these Mg–dipyrrin complexes. Analysis of various MgX? Pn (X=anion) systems revealed significant substitution effects on their chemical, electrochemical, and photophysical properties, as well as on the Mg²⁺‐cation affinities. The fluorescence properties of MgCl? Pn reflected the effect of donor‐excited photoinduced electron transfer (d‐PET) processes from the dipyrrin subunit (as a donor site) to the 1,10‐phenanthroline acceptor subunit. The proposed d‐PET process was analyzed by electron paramagnetic resonance (EPR) spectroscopy and by femtosecond transient absorption (TA) spectroscopy, as well as by theoretical DFT calculations. Taken together, these studies provide support for the suggestion that a radical species is produced as the result of an intramolecular charge‐transfer process, following photoexcitation. These photophysical effects, combined with a mixed dipyrrin–phenanthroline structure that is capable of effective Mg²⁺‐cation complexation, lead us to suggest that porphyrin‐inspired systems, such as H? Pn , have a role to play as magnesium‐cation sensors.     

Syntheses,Crystal Structures,and Magnetic Properties of Three Metal‐Nitroxide Complexes with the V‐shaped 4, 4′‐Oxybis(benzoate)

Three new metal–nitroxide complexes {[Ni(NIT4Py)₂(obb)(H₂O)₂] · 1.5H₂O}_n ( 1 ), {[Co(NIT4Py)₂(obb)(H₂O)₂] · 2H₂O}_n ( 2 ), and [Co(IM4Py)₂(obb)₂(H₂O)₂][Co(IM4Py)₂(H₂O)₄] · 10H₂O ( 3 ) with the V‐shaped 4,4′‐oxybis(benzoate) [NIT4Py = 2‐(4′‐pyridyl)‐4,4,5,5‐tetramethylimidazoline‐1‐oxyl‐3‐oxide, IM4Py = 2‐(4′‐pyridyl)‐4,4,5,5‐tetramethylimidazoline‐1‐oxide, and obb = 4, 4′‐oxybis(benzoate) anion] were synthesized and structurally characterized. Single‐crystal X‐ray analyses indicate that complexes 1 and 2 crystallize in neutral one‐dimensional (1D) zigzag chains, in which the nitroxide–metal–nitroxide units are linked by the V‐shaped 4,4′‐oxybis(benzoate) anions, whereas complex 3 consists of isolated mononuclear [Co(IM4Py)₂(obb)₂(H₂O)₂]^2– anions and [Co(IM4Py)₂(H₂O)₄]²⁺ ions. Magnetic measurements show that complexes 1 and 2 both exhibit weak antiferromagnetic interactions between the metal ions and the nitroxides.     

Synthesis,Characterization, and Luminescent Properties of Silver(I) Complexes based on Diphosphine Ligands and 2,9‐Dimethyl‐1,10‐phenanthroline

Five mono‐nuclear silver(I) complexes with the ligand 2,9‐dimethyl‐1,10‐phenanthroline, namely [Ag(DPEphos)(dmp)]BF₄ ( 1 ), [Ag(DPEphos)(dmp)]CF₃SO₃ ( 2 ), [Ag(DPEphos)(dmp)]ClO₄ ( 3 ), [Ag(DPEphos)(dmp)]NO₃ ( 4 ), and [Ag(dppb)(dmp)]NO₃ · CH₃OH ( 5 ) {DPEphos = bis[2‐(diphenylphosphanyl)phenyl]ether, dppb = 1,2‐bis(diphenylphosphanyl)benzene, dmp = 2,9‐dimethyl‐1,10‐phenanthroline} were characterized by X‐ray diffraction, IR, ¹H NMR, ³¹P NMR and fluorescence spectroscopy. Their terahertz (THz) time‐domain spectra were also studied. In these complexes the silver(I), which is coordinated by two kinds of chelating ligands, adopts four‐coordinate modes to generate mono‐nuclear structures. In complexes 1 , 3 – 5 , offset π ··· π weak interactions exist between the neighboring benzene rings. In the ³¹P NMR spectra, there exist splitting signals (dd), which can be attributed to the coupling of the ^107,109Ag–³¹P. All the emission peaks of these complexes are attributed to ligand‐centered excited states.     

A MALDI‐TOF MS study of lanthanide(III)‐cored poly(phenylenevinylene) dendrimers

An extensive study by matrix‐assisted laser desorption/ionization time‐of‐flight (MALDI‐TOF) mass spectrometry (MS) of some first‐generation and second‐generation lanthanide(III)‐cored poly(phenylenevinylene) dendrimers is described. The complexes were obtained by self‐assembly of suitably functionalized carboxylate dendrons around the lanthanide ion (La³⁺, Er³⁺). Fourier transform infrared (FT‐IR) spectroscopy gave reasonable evidence for the proposed structures. However, MS was used to ascertain unequivocally the complex formation. The most reliable results were found in the negative reflector mode, using 2‐[(2E)‐3‐(4‐tert‐butylphenyl)‐2‐methylprop‐2‐enylidene]malononitrile (DCTB) as matrix. Well‐defined and highly resolved base peaks corresponding to negative ions of [Gn₄La]^? and [Gn₄Er]^? were found in all cases, with an excellent match between the theoretical and observed isotope distributions. However, the 3 : 1 stoichiometry used in the synthesis guarantees an empirical formula Gn₃Ln for the complexes. Copyright © 2008 John Wiley & Sons, Ltd.     

Surface Induced Dissociation Yields Quaternary Substructure of Refractory Noncovalent Phosphorylase B and Glutamate Dehydrogenase Complexes

Ion mobility (IM) and tandem mass spectrometry (MS/MS) coupled with native MS are useful for studying noncovalent protein complexes. Collision induced dissociation (CID) is the most common MS/MS dissociation method. However, some protein complexes, including glycogen phosphorylase B kinase (PHB) and L-glutamate dehydrogenase (GDH) examined in this study, are resistant to dissociation by CID at the maximum collision energy available in the instrument. Surface induced dissociation (SID) was applied to dissociate the two refractory protein complexes. Different charge state precursor ions of the two complexes were examined by CID and SID. The PHB dimer was successfully dissociated to monomers and the GDH hexamer formed trimeric subcomplexes that are informative of its quaternary structure. The unfolding of the precursor and the percentages of the distinct products suggest that the dissociation pathways vary for different charge states. The precursors at lower charge states (+21 for PHB dimer and +27 for GDH hexamer) produce a higher percentage of folded fragments and dissociate more symmetrically than the precusors at higher charge states (+29 for PHB dimer and +39 for GDH hexamer). The precursors at lower charge state may be more native-like than the higher charge state because a higher percentage of folded fragments and a lower percentage of highly charged unfolded fragments are detected. The combination of SID and charge reduction is shown to be a powerful tool for quaternary structure analysis of refractory noncovalent protein complexes, as illustrated by the data for PHB dimer and GDH hexamer.