A surfactant–heme–sulfonyl imidazole system as a nano-artificial enzyme

The heme–imidazole–sodium dodecyl sulfate (SDS) ternary complex has been designed as a peroxidase-like nano-artificial enzyme, in which the imidazole moiety functions like the histidine ligand in the native horseradish peroxidase (HRP) and increases the reactivity and catalytic efficiency of the designed artificial enzyme by promoting the heterolytic cleavage of hydrogen peroxide. In the present study, three different ligands were used as the imidazole-based ligands in the heme–ligand–SDS ternary system: (1) 1-methylsulfonyl-1H-imidazole, (2) 1-(benzensulfonyl)-1H-imidazole, and (3) 1-tosyl-1H-imidazole (TsIm). The three different ligands gave variable reactivity in the system studied, and the enzymatic activation parameters, using spectrophotometric measurements, showed that the TsIm ligand had a higher catalytic efficiency at 26.38 % of the native HRP efficiency. To investigate the increase in catalytic activity, its mechanism was explored based on the original mechanism of HRP and the structure of its first catalytic intermediate (compound I). Based on the mechanism of HRP and the structure of compound I, a suggested mechanism for Tslm is as follows: the TsIm cation radical makes up part of the compound I structure, which is stabilized in the enzymatic process by charge distribution that is induced via phenyl and methyl groups. Suicide inactivation of heme–TsIm–SDS and heme–imidazole–SDS models was also compared to each other. Suicide inactivation was less exhibited in the presence of TsIm than imidazole in this system unless high concentrations of hydrogen peroxide were used.     

Hydroperoxynaphthalimide Derivative-mediated Oxidation of Heme Proteins on Photoirradiation: Horseradish Peroxidase

Abstract— Horseradish peroxidase (HRP) was photoirradiated in the presence of organic peroxide (1, hydroperoxynaphthalimide derivative) at around 353 nm and 0°C. This compound bound to a heme pocket of HRP as shown by its inhibitory effect on catalysis by HRP ( K _i= 5.5 times 10⁻⁵ M) and subsequently it formed an intermediate in the same way as H202. Sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) suggested cleavage of the peptide chain of HRP on photoirradiation with 1. From CD spectra and SDS-PAGE, it was presumed that the destruction of both secondary structure and heme of the enzyme occurred to some extent upon photoirradiation, which resulted in a decrease in the catalytic activity. The absorption spectra also suggested that the heme group of the enzyme was destroyed, and the fluorescence spectra showed that the Trp residue in the photoirradiated HRP was oxidized to N -formylkynurenine by a hydroxyl radical generated from 1. Energy transfer from the excited naphthalimide moiety or hydrogen abstraction also seemed to make some contribution to the alteration of the heme group.     

Characterization of sol-gel immobilized lipases

The immobilization of lipases within a chemically inert hydrophobic sol-gel support, which is prepared by polycondensation of hydrolyzed tetramethoxysilane (TMOS) and methyltrimethoxysilane (MTMS) or iso-butyltrimethoxysilane (iso-BTMS), results in heterocatalysts. The heterocatalysts so prepared showed a dramatically enhanced catalytic activity and stability as measured by the hydrolysis and transesterification of soybean oil. The lipase/sol-gel materials were characterized by nitrogen adsorption to determine their specific surface area. Solid state NMR was used to reveal the degree of cross-linking of the sol-gel materials. Scanning electron microscopy and atomic force microscopy were used to observe the morphology of the biocatalysts. Transmission electron microscopy and confocal microscopy were used to investigate the enzyme distribution within the sol-gel materials. The characterization studies showed that the most active lipase-containing sol-gel was a non-porous amorphous material with enzyme randomly distributed throughout the sol-gel material. The activity of the immobilized enzyme did not correlate to the degree of cross-linking or the specific surface area of the sol-gel materials. The highly retained activity of the immobilized enzyme was more likely attributed to the conformational changes of the enzyme during the immobilization, which result in enzyme's fixation in a more favorable conformation and to the lipophilic environment of the hybrid matrix structure which facilitates the transport of the hydrophobic substrate to the active sites.     

酶的光谱电化学研究（Ⅰ）：辣根过氧化物酶的电化学性质

利用薄层光谱电化学技术研究了辣根过氧化物酶(HRP)及其化合物的氧化还原过程。指出HRP可在固体电极上进行直接电子传递,该电极反应不是酶中二硫键的还原,而是血红素辅基中心金属离子的氧化态转变。测定了HRP(Fe~(3+)/Fe~(2+))电对的标准氧化还原电位和电化学动力学参数,讨论了HRP氧化性中间物的电化学性质。     

Flowerlike hybrid horseradish peroxidase nanobiocatalyst for the polymerization of guaiacol

In this study, the catalytic activity and stability of flowerlike hybrid horseradish peroxidase (HRP) nanobiocatalyst (HRP-Cu ²⁺ ) obtained from Cu ²⁺ ions and HRP enzyme in the polymerization reaction of guaiacol were analyzed. We demonstrated that HRP-Cu ²⁺ and hydrogen peroxide (H ₂ O ₂ ) initiator showed significantly increased catalytic activity and stability on the polymerization of guaiacol compared to that of free HRP enzyme. Poly(guaiacol) was observed with quite high yields (88%) and molecular weights (38,000 g/mol) under pH 7.4 phosphate-buffered saline (PBS) conditions at 60 °C with 5 weight% of HRP-Cu ²⁺ loading. HRP-Cu ²⁺ also shows very high thermal stability and works even at 70 °C reaction temperature; free HRP enzyme denatures at that temperature. Furthermore, HRP-Cu ²⁺ provided considerable repeated use and showed some degree of catalytic activity, even after the fourth recycle, in the polymerization of guaiacol.     

Light-driven horseradish peroxidase cycle by using photo-activated methylene blue as the reducing agent

In this work, the regeneration of native horseradish peroxidase (HRP), following the consecutive reduction of oxo-ferryl pi-cation (compound I) and oxo-ferryl (compound II) forms, was observed by UV-visible spectrometry and electron paramagnetic resonance (EPR) in the presence of methylene (MB+), in the dark and under irradiation. In the dark, MB+ did not affect the rate of HRP compound I and II reduction, compatible with hydrogen peroxide as the solely reducing species. Under irradiation, the dye promoted a significant increase in the native HRP regeneration rate in a pH-dependent manner. Flash photolysis measurements revealed significant redshift of the MB+ triplet absorbance spectrum in the presence of native HRP. This result is compatible with the dye binding on the enzyme structure leading to the increase in the photogenerated MB* yield. In the presence of HRP compound II, the lifetime of the dye at 520 nm decreased approximately 75% relative to the presence of native HRP that suggests MB* as the heme iron photochemical reducing agent. In argon and in air-saturated media, photoactivated MB+ led to native HRP regeneration in a time- and concentration-dependent manner. The apparent rate constant for photoactivated MB+-promoted native HRP regeneration, in argon and in air-saturated medium and measured as a function of MB+ concentration, exhibited saturation that is suggestive of dye binding on the HRP structure. The dissociation constant (KMB) observed for the binding of dye to HRP was 5.4+/-0.6 microM and 0.57+/-0.05 microM in argon and air-saturated media, respectively. In argon-saturated medium, the rate of the conversion of HRP compound II to native HRP was significantly higher, k2argon=(2.1+/-0.1)x10(-2) s(-1), than that obtained in air-equilibrated medium, k2air=(0.73+/-0.02)x10(-2) s(-1). Under these conditions the efficiency of photoactivated MB(+)-promoted native HRP regeneration was determined in argon and air-equilibrated media as being, respectively: k2/KMB=3.9x10(3) and 12.8x10(3) M(-1) s(-1).     

Spectroscopic studies of interactions involving horseradish peroxidase and Tb3+

The spectroscopic properties of interactions involving horseradish peroxidase (HRP) and Tb(3+) in the simulated physiological solution was investigated with some electrochemical and spectroscopic methods, such as cyclic voltammetry (CV), circular dichroism (CD), X-ray photoelectron spectroscopy (XPS) and synchronous fluorescence (SF). It was found that Tb(3+) can coordinate with oxygen atoms in carbonyl groups in the peptide chain of HRP, form the complex of Tb(3+) and HRP (Tb-HRP), and then lead to the conformation change of HRP. The increase in the random coil content of HRP can disturb the microstructure of the heme active center of HRP, in which the planarity of the porphyrin cycle in the heme group is increased and then the exposure extent of the electrochemical active center is decreased. Thus Tb(3+) can inhibit the electrochemical reaction of HRP and its electrocatalytic activity for the reduction of H(2)O(2) at the Au/Cys/GC electrode. The changes in the microstructure of HRP obstructed the electron transfer of Fe(III) in the porphyrin cycle of the heme group, thus HRP catalytic activity is inhibited. The inhibition effect of Tb(3+) on HRP catalytic activity is increased with the increasing of Tb(3+) concentration. This study would provide some references for better understanding the rare earth elements and heavy metals on peroxidase toxicity in living organisms.     

What external perturbations influence the electronic properties of catalase compound I?

We have performed density functional theory calculations on an active-site model of catalase compound I and studied the responses of the catalytic center to external perturbations. Thus, in the gas phase, compound I has close-lying doublet and quartet spin states with three unpaired electrons: two residing in pi(FeO) orbitals and the third on the heme. The addition of a dielectric constant to the model changes the doublet-quartet energy ordering but keeps the same electronic configuration. By contrast, the addition of an external electric field along one of the principal axes of the system can change the doublet-quartet energy splitting by as much as 6 kcal mol(-1) in favor of either the quartet or the doublet spin state. This sensitivity is much stronger than the effect obtained for iron heme models with thiolate or imidazole axial ligands. Moreover, an external electric field is able to change the electronic system from a heme-based radical [Fe=O(Por*+)OTyr-] to a tyrosinate radical [Fe=O(Por)OTyr*]. This again shows that oxo-iron heme systems are chameleonic species that are influenced by external perturbations and change their character and catalytic properties depending on the local environment.     

Compound I of heme oxygenase cannot hydroxylate its heme meso-carbon

Heme oxygenase (HO) catalyzes heme catabolism through three successive oxygenation steps where the substrate heme itself activates O2. It has been thought that the reactive species responsible for the first heme oxygenation, meso-hydroxylation, is the hydroperoxy-ferric heme intermediate (Fe-OOH) rather than an oxo ferryl porphyrin cation radical, so-called compound I. A recent theoretical study (Kamachi, T.; Yoshizawa, K. J. Am. Chem. Soc. 2005, 127, 10686), however, proposed that compound I can oxidize its meso-carbon atom with the assistance of a bridging water molecule. In this communication, we report the first direct observation of compound I of a heme-HO-1 complex, generated by reaction of ferric-HO-1 with m-chloroperbenzoic acid. HO compound I slowly decays to compound II without producing any meso-hydroxylated products. It does react with guaiacol and thioanisole, however. Our findings unambiguously rule out involvement of compound I in the HO catalysis.     

Electron transfer reactivity and the catalytic activity of horseradish peroxidase incorporated in dipalmitoylphosphatidic acid films

Horseradish peroxidase (HRP) was incorporated in dipalmitoylphosphatidic acid (DPPA) to form a film and the film was modified on pyrolytic graphite electrode. UV-Vis spectra suggested that HRP in the film could keep its secondary structure similar to the native state. A pair of stable, well-defined, and quasi-reversible cyclic voltammetric peaks was observed with the formal potential at -276.2 mV (vs. saturated calomel electrode), characteristic of heme Fe(III)/Fe(II) redox couple of HRP. The apparent heterogeneous electron transfer rate constant and other electrochemical parameters were presented. The catalytic activity of HRP in DPPA film toward oxygen, hydrogen peroxide and nitric oxide were also examined.     

红外光谱和圆二色光谱法研究氰根配位的辣根过氧化物酶(HRP)的热伸展过程

典型的辣根过氧化物酶同功酶 C(HRP)是用于过氧化物酶生物化学研究的原型酶 .HRP的血红素辅基的铁是五配位的 ,血红素口袋的远端和近端位点都存在一个氢键网络 .HRP结构的稳定性已用随温度变化的 FTIR光谱法 [1]和圆二色及荧光光谱法 [2 ]进行了研究 ,并与细胞色素 c过氧化物酶进行了比较 . HRP的氰根加合物的活性位点的动力学稳定性和分子结构也用二维核磁共振法进行了表征[3] .但是关于氰根配体对 HRP在热伸展过程中的结构影响尚未见到报道 .本文用傅里叶变换红外光谱(FTIR)和圆二色 (CD)光谱法详细研究了氰根配位的 HRP随温…     

溶胶凝胶复合材料的研究及对生物酶的固定

研究了一种新型的氧化铝/聚乙二醇（Al2O3/PEG）溶胶凝胶复合材料,利用红外光谱、探针电镜对材料的性能进行了表征。试验结果表明：复合膜中含有大量的羟基和氢键,且两种组分形成互穿网络,该材料刚柔相济的特点使其适合于做生物传感器的固定化材料。PEG是极性高聚物,在溶胶凝胶的体系中,可以起到加速反应及防止膜开裂的作用。Al2O3/PEG复合材料对酶具有较好的生物相容性和较高的稳定性,将生物酶固定其中制备成的生物传感器具有良好的反应活性,同时,还证明了这种生物传感器具有稳定性和灵敏度高的特点。     

In situ synthesis of mixed-valent manganese oxide nanocrystals: an in situ synchrotron X-ray diffraction study

Phase transformations of materials can be studied by in situ synchrotron X-ray diffraction. However, most reported in situ synchrotron XRD studies focus on solid state/gel systems by measuring phase/structure changes during application of pressure or heat. Phase transformations during material synthesis and their applications, especially in wet chemistry processes with different media, have not drawn much attention. Here, using manganese oxides as examples, we report the successful characterization of phase transformations in in situ hydrothermal synthesis conditions by the in situ synchrotron XRD method using a quartz/sapphire capillary tube as the synthesis reactor. The results were used for better design of materials with controlled structures and properties. This method can be generally used for synthesis of manganese oxides as well as for in situ characterization of other material syntheses using hydrothermal, sol-gel, and other methods. In addition, catalytic processes in liquid-solid, gas-solid, and solid-solid systems can also be studied in such an in situ way so that catalytic mechanisms can be better understood and catalyst synthesis and catalytic processes can be optimized.     

Evidence for Peroxidase Activity in Caralluma umbellata

Vast applications of peroxidases create an increasing demand to characterize peroxidases from new sources with more applicability potential. The aim of the present study was to check the presence of peroxidase activity from Caralluma umbellata. This is the first report on the C. umbellata peroxidase (CUP). The presence of peroxidase was revealed by the histochemical analysis of the stem sections, zymographic studies, and in vitro peroxidase activity assay using various reducing substrates viz., 2, 2′-azinobis (3-ethylbenzthiazoline-6-sulfonic acid) (ABTS), guaiacol, o-dianisidine, and ferulic acid. The band pattern in zymogram confirms that CUP has a molecular weight less than that of horseradish peroxidase (44?kDa). Comparative evaluation of peroxidase activity of CUP with respect to horseradish peroxidase (HRP) indicates that CUP catalyzes ABTS and ferulic acid in a similar pattern as HRP but with guaiacol, the extent of catalysis shown by CUP over HRP is high. The standard inhibitors sodium azide and sodium meta bisulphite inhibited CUP activity in a dose dependent manner.     

Microperoxidase-11/NH2-FSM16 as a H2O2-resistant heterogeneous nanobiocatalyst: a suicide-inactivation study

The catalytic activity of heme peptides is an area of intense investigation. They are utilized for exploring the fine details of structural and functional properties of an active site, and to create minimized and industrial catalysts. The peroxidase activity and kinetics of suicide-inactivation of microperoxidase-11/FSM16 as a heterogeneous nanobiocatalyst in oxidation reaction of guaiacol were studied in the presence of high concentration of hydrogen peroxide (2?mM), as its natural suicide-substrate. The substrate concentration was first-order in relation to aromatic substrate (AH), and the ratio of suicide-substrate (H₂O₂) was kept much higher than the benign substrate (guaiacol). The results of kinetic analysis confirmed a similar mechanism for suicide-peroxide inactivation of horseradish peroxidase (HRP), microperoxidase (MP-11) and MP-11/NH₂-FSM16. Inactivation kinetic parameters, including intact activity of MP-11/NH₂-FSM16, ??_i, and the apparent inactivation rate constant (k _i) were obtained as 0.229?±?0.009?min^?1 and 0.651?±?0.041?min^?1 at [H₂O₂]?=?2.0?mM, respectively, in 5.0?mM phosphate buffer solution (PBS; pH 7.0) at 27?°C. Our results indicated that covalent immobilization of microperoxidase onto NH₂-FSM16 protected the heme group against peroxide inactivation resulting in generation of an efficient peroxide-resistant heterogeneous nanobiocatalyst.     

Inactivation of horseradish peroxidase by phenoxyl radical attack

To test the hypothesis that horseradish peroxidase (HRP) can be inactivated by phenoxyl radicals upon reaction with H(2)O(2)/phenol, we probed HRP-catalyzed phenol oxidation at various phenol/H(2)O(2) concentrations. To this end the total protein, phenolic product, active protein, and iron concentrations in the aqueous phase were determined by protein assay, phenol-(14)C isotopic labeling, resonance Raman and atomic absorption spectroscopy, respectively. Additionally, resonance Raman and FTIR measurements were carried out to probe possible structural changes of the enzyme during the reaction. The data obtained provide the first experimental support for the hypothesis that HRP can be inactivated by a phenoxyl radical attack. The heme macrocycle destruction involving deprivation of the heme iron occurs as a result of the reaction. An intermediate type of the active protein was observed by Raman difference spectra at low concentrations which features a stabilization of the quantum mixed state of the heme iron and a significant amount of phenoxylphenol-type oligomers in solution and probably also in the heme pocket. This work provides a basis for evaluating the relative contributions of different HRP inactivation mechanisms and is thus critical for optimizing engineering applications involving HRP reactions.     

Coherence spectroscopy investigations of the low-frequency vibrations of heme: effects of protein-specific perturbations

Femtosecond coherence spectroscopy is used to probe the low-frequency (20-200 cm(-1)) vibrational modes of heme proteins in solution. Horseradish peroxidase (HRP), myoglobin (Mb), and Campylobacter jejuni globin (Cgb) are compared and significant differences in the coherence spectra are revealed. It is concluded that hydrogen bonding and ligand charge do not strongly affect the low-frequency coherence spectra and that protein-specific deformations of the heme group lower its symmetry and control the relative spectral intensities. Such deformations potentially provide a means for proteins to tune heme reaction coordinates, so that they can perform a broad array of specific functions. Native HRP displays complex spectral behavior above approximately 50 cm(-1) and very weak activity below approximately 50 cm(-1). Binding of the substrate analog, benzhydroxamic acid, leads to distinct changes in the coherence and Raman spectra of HRP that are consistent with the stabilization of a heme water ligand. The CN derivatives of the three proteins are studied to make comparisons under conditions of uniform heme coordination and spin-state. MbCN is dominated by a doming mode near 40 cm(-1), while HRPCN displays a strong oscillation at higher frequency (96 cm(-1)) that can be correlated with the saddling distortion observed in the X-ray structure. In contrast, CgbCN displays low-frequency coherence spectra that contain strong modes near 30 and 80 cm(-1), probably associated with a combination of heme doming and ruffling. HRPNO displays a strong doming mode near 40 cm(-1) that is activated by photolysis. The damping of the coherent motions is significantly reduced when the heme is shielded from solvent fluctuations by the protein material and reduced still further when T approximately < 50 K, as pure dephasing processes due to the protein-solvent phonon bath are frozen out.     

Temperature-dependent spin crossover in neuronal nitric oxide synthase bound with the heme-coordinating thioether inhibitors

A series of L-arginine analogue nitric oxide synthase inhibitors with a thioether tail have been shown to form an Fe-S thioether interaction as evidenced by continuous electron density between the Fe and S atoms. Even so, the Fe-S thioether interaction was found to be far less important for inhibitor binding than the hydrophobic interactions between the alkyl group in the thioether tail and surrounding protein (Martell et al. J. Am. Chem. Soc. 2010 , 132 , 798). However, among the few thioether inhibitors that showed Fe-S thioether interaction in crystal structures, variations in spin state (high-spin or low-spin) were observed dependent upon the heme iron oxidation state and temperature. Since modern synchrotron X-ray data collection is typically carried out at cryogenic temperatures, we reasoned that some of the discrepancies between cryo-crystal structures and room-temperature UV-visible spectroscopy could be the result of temperature-dependent spin-state changes. We, therefore, have characterized some of these neuronal nitric oxide synthase (nNOS)-thioether inhibitor complexes in both crystal and solution using EPR and UV-visible absorption spectrometry as a function of temperature and the heme iron redox state. We found that some thioether inhibitors switch from high to low spin at lower temperatures similar to the "spin crossover" phenomenon observed in many transition metal complexes.     

油水两相体系中非晶态NiB/SiO_2-Al_2O_3对生物油模型化合物的加氢脱氧研究

制备了负载型的非晶态NiB/SiO_2-Al_2O_3催化剂,利用XRD、TEM、N2吸附-脱附和XPS表征手段对其进行了分析,并考查了催化剂在油水两相体系中对生物油模型化合物苯甲醚和愈创木酚的加氢脱氧性能。结果表明,在B的修饰作用下,Ni处于富电子状态,从而导致非晶态NiB/SiO_2-Al_2O_3催化剂的加氢脱氧活性明显高于晶态Ni/SiO_2-Al_2O_3催化剂。提高催化反应温度和延长反应时间有利于愈创木酚和苯甲醚的加氢脱氧转化。在实验结果的基础上,对愈创木酚和苯甲醚的加氢脱氧反应路径进行了分析,为生物油加氢脱氧反应机理提供了参考依据。     

Denaturation and Leaching Study of Horseradish Peroxidase Encapsulated in Sol-Gel Matrices

Sol-gel matrices have been shown to be relatively inert while preserving the spectroscopic properties and biological activity of the encapsulated proteins. Horseradish peroxidase (HRP) is a hemeprotein widely used in the field of biosensors because of its high specificity for hydrogen peroxide. However, partial inactivation of the protein has been reported when incorporated in aged gels. Whether that inactivation comes from the unfolding of some of the encapsulated proteins or from the leaching of the heme non-covalent active site of HRP is evaluated by absorption and fluorescence spectroscopy. This study shows that the single Trytophan (Trp) fluorescence of HRP may be used to distinguish denaturation processes from leaching of the heme group, as well as to estimate the extent of the denaturation.