基于离散小波变换的蛋白质结构、功能与进化关系延时交叉相关分析

基于氨基酸的疏水特性, 将离散小波变换与延时交叉相关分析相结合, 提出了一种分析蛋白质结构、功能和进化关系的新方法——序列小波层次相关法. 以丝氨酸蛋白酶超家族中Trypsin种属为研究对象, 描述了该方法在揭示不同物种的Trypsin蛋白质进化关系中的应用; 以蛋白质酪氨酸磷酸酶、血红蛋白和溶菌酶为例, 采用该方法揭示了蛋白质之间功能与序列的内在关系. 该方法为非参数方法, 具有简单、直观、可视和可操作性强等特点, 且不需要事先知道蛋白质的结构, 仅从蛋白质的氨基酸序列出发即可比较和揭示蛋白质之间的关系.     

牛血清白蛋白和溶菌酶为双模板蛋白质的表面印迹聚合物的制备及吸附性能

采用反应条件温和的原子转移自由基聚合法(ATRP),以N-异丙基丙烯酰胺(NIPAAm)和丙烯酰胺(AAm)为功能单体,以N-(3-二甲氨基丙基)甲基丙烯酰胺(DMAPMA)为辅助功能单体,制备了以牛血清白蛋白(BSA)和溶菌酶(Lyz)为双模板蛋白质的表面印迹聚合物(Bi-MIP)。对印迹过程中辅助功能单体的量进行了考察,结果表明,在单一蛋白质溶液和混合蛋白质溶液中,当DMAPMA为20 μL时,制备的Bi-MIP对模板蛋白质BSA和Lyz有较好的吸附容量与选择性。通过静态吸附实验考察了Bi-MIP的吸附性能,并结合Langmuir吸附模型得到聚合物对模板蛋白质BSA和Lyz的最大吸附容量分别为10.2 mg/g和19.2 mg/g。且该印迹聚合物在实际样品中对模板蛋白质也表现出较强的吸附能力和较高的选择性。该方法将为复杂生物样品中同时对双/多种目标蛋白质的识别提供一种新的途径。     

以溴甲酚绿为电化学探针线性扫描极谱法测定人血清白蛋白

蛋白质含量的测定是临床检测、生化分析等方面的重要内容。本研究以溴甲酚绿为电化学探针,考察了其与蛋白质相互作用的最佳条件,建立了测定蛋白质的电化学分析方法,该方法试剂和反应体系稳定,测定方法简单,灵敏度高,应用此法对人血清实际样品进行了测定,结果同传统的考马斯亮蓝G-250光度法一致。     

等电聚焦预分离用于肝癌细胞分泌蛋白质组的分级与鉴定

分泌蛋白质组(secretome)是指在特定的时空条件下,细胞、组织等分泌的全部蛋白质。分泌蛋白质组可能包含了大量的疾病诊断生物标志物,因此其相关研究越来越受到重视。分泌蛋白质组的组成高度复杂且浓度范围宽,这对分析方法提出了挑战。建立有效的蛋白质或肽段预分离策略,将有利于分泌蛋白质的高覆盖率鉴定。本研究以肝癌细胞系MHCC97L的无血清培养分泌蛋白质为研究对象,采用一种新型等电聚焦预分离(OFFGEL)系统,考察了肽段水平的分级对蛋白质鉴定结果的影响。结果表明,分离后各馏分中肽段的等电点分布与理论预测基本一致,每个馏分中单独鉴定的肽段比例接近80%,显示了该系统对肽段的高分辨分离能力。结合生物质谱技术,在肝癌细胞分泌系统中鉴定了2995个蛋白质,显示了该系统在复杂体系蛋白质组研究中的应用潜力。     

阴离子交换整体柱对蛋白质的分离与纯化

分别用乙二胺、二乙胺、三乙胺将自制的以甲基丙烯酸缩水甘油酯(GMA)为单体、乙二醇二甲基丙烯酸酯(EDMA)为交联剂的整体柱修饰为弱、强阴离子交换整体柱。考察了该整体柱的性能,选择出分离蛋白质(牛血清白蛋白、溶菌酶和谷胱甘肽)的最佳实验条件,并在最佳分离条件下考察了这些蛋白质在整体柱上的色谱行为和该整体柱对纤维素降解酶的分离纯化情况。实验结果表明,该整体柱性能良好,可以实现对纤维素降解酶的快速分离与纯化。同时,实验也证明采用梯度洗脱可以实现对某些蛋白质的分离纯化。     

反相高效液相色谱法测定蟾酥中的3种蟾毒内酯

建立了一种基于毛细管反相液相色谱-串联质谱联用技术和质谱峰强度数据处理的肽段鉴定和相对定量分析方法。该方法无需对样品中的肽进行化学标记,在对样品进行反相色谱分离和串联质谱分析后,将二级质谱扫描数据进行蛋白质数据库搜索,获得所鉴定肽段的序列、保留时间、质荷比、带电荷数等定性信息;再以此为定位依据,在全扫描质谱数据中提取该肽段对应的离子峰并以该离子峰的峰强度作为定量信息,从而实现对不同样品中的共有肽段进行差异比较分析。以标准蛋白酶解混合肽段为实验对象,以肽段相对强度的相对标准偏差为指标,考察了该方法用于肽段相对定量分析的重现性、检测动态范围以及浓度标准曲线等,为将该方法用于生物样品中内源性肽的差异分析奠定了基础。。     

毛细管反相液相色谱-串联质谱用于肽的鉴定和相对定量分析

建立了一种基于毛细管反相液相色谱-串联质谱联用技术和质谱峰强度数据处理的肽段鉴定和相对定量分析方法。该方法无需对样品中的肽进行化学标记,在对样品进行反相色谱分离和串联质谱分析后,将二级质谱扫描数据进行蛋白质数据库搜索,获得所鉴定肽段的序列、保留时间、质荷比、带电荷数等定性信息;再以此为定位依据,在全扫描质谱数据中提取该肽段对应的离子峰并以该离子峰的峰强度作为定量信息,从而实现对不同样品中的共有肽段进行差异比较分析。以标准蛋白酶解混合肽段为实验对象,以肽段相对强度的相对标准偏差为指标,考察了该方法用于肽段相对定量分析的重现性、检测动态范围以及浓度标准曲线等,为将该方法用于生物样品中内源性肽的差异分析奠定了基础。     

乙二醇-磷霉素改性氧化锆色谱固定相的制备及其在蛋白质分离中的应用

合成了分离蛋白质的乙二醇-磷霉素钠改性氧化锆高效液相色谱固定相, 通过漫反射红外光谱、元素分析等分析方法对该固定相进行了表征. 以溶菌酶、核糖核酸酶A、细胞色素C和糜蛋白酶四种标准碱性蛋白质为探针, 系统地考察了固定相的疏水相互作用色谱性能. 结果表明, 乙二醇-磷霉素改性氧化锆固定相对蛋白质有一定的保留, 表现出较高的分离选择性.     

用于变性蛋白质复性及同时纯化的简易型色谱柱的研制及其应用

研制出一种简易型色谱柱并通过装填大颗粒的疏水色谱填料对色谱柱的性能进行了考察,该柱的外形和操作如同传统的液相色谱柱,但它却在生物大分子分离方面有着和高效液相色谱相似的分辨率。另外,只要给该柱装填合适的固定相,比如疏水相互作用色谱固定相,便可用于蛋白质的复性及同时纯化。实验考察了该色谱柱的结构、操作和性能,包括柱压、柱寿命及对蛋白质的分辨率等。以溶菌酶为模型蛋白质,实验测得其在初始浓度为50.0 g/L时的质量回收率和活性回收率分别为(96.6±1.3)%和(101.1±6.0)%。这种简易型色谱柱价格低廉     

免疫亲和富集-荧光光谱法检测牛血清白蛋白的研究

本文通过戊二醛法合成免疫磁球(IMMs),采用荧光电镜、透射电镜和振动样品磁强计对其进行表征。合成的IMMs为单分散的球形结构,粒径约为510 nm,具有超顺磁性(饱和磁化强度为40.44 emu/g)。基于此,以牛血清白蛋白(BSA)作为蛋白质模型,建立了免疫亲和富集-荧光光谱法用于目标蛋白质的分离与检测。考察并优化了影响免疫亲和富集的因素。在最佳实验条件下,IMMs对目标蛋白质的最大吸附容量为107.7μg/g,可重复使用10次以上。将该方法应用于人血清基质中BSA的测定,加标回收率不低于89.3%,由基质辅助激光解吸电离飞行时间质谱仪测得分离后的BSA纯度较高。结果表明,该方法适用于人血清样品中蛋白质的选择性分离与检测。     

Investigation of the sorption of water vapor on cation-substituted vermiculite. 2. Thermodynamic description of sorption equilibria

The changes in the thermodynamic functions of the sorbents were calculated for the first time from measurements of the deformations of vermiculite during the sorption of water vapor and adsorption-calorimetric data.Institute of Physical Chemistry, Russian Academy of Sciences, 117915 Moscow. Institute of Colloid Chemistry and the Chemistry of Water, Academy of Sciences of the Ukraine, 252180 Kiev. Translated fromIzvestiya Akademii Nauk, Seriya Khimicheskaya, No. 6, pp. 1270–1275, June, 1992.     

Thermodynamics of ionization of water over wide ranges of temperature and pressure

We have summarized results of many experimental investigations of the thermodynamics of ionization of H₂O(liq.) from 0–300°C and from 1.0 atm to nearly 8000 atm. Results of these investigations (equilibrium constants, enthalpies of ionization, heat capacities, partial molal volumes, and compressibilities) have been used for a number of thermodynamic calculations. It is particularly noteworthy that it is possible to use thermal data from 0–145°C with an equilibrium constant for 25°C in calculating reasonably accurate equilibrium constants for temperatures as high as 300°C. Similarly, it is possible to use volumetric data that refer to 1.0 atm in calculating useful equilibrium constants that apply for pressures as high as 2000 atm.Much of the work reported here was done while the author was on leave at the University of Lethbridge.     

Thermochemistry of aqueous solutions of alkylated nucleic acid bases. VIII. Enthalpies of hydration of 6-alkyluracils

Enthalpies of solution in water H _sol ^o and enthalpies of sublimation H _sub ^o were determined for a number of crystalline derivatives of uracil: 1,6-dimethyluracil (m ₂ ^1,6 Ura), 1,3,6-trimethyluracil (m ₃ ^1,3,6 Ura), 6-ethyl-1,3-dimethyluracil (e⁶m ₂ ^1,3 Ura), 6-propyl-1,3-dimethyluracil (pr⁶m ₂ ^1,3 Ura) and 6-butyl-1,3-dimethyluracil (but⁶m ₂ ^1,3 Ura). Standard enthalpies of hydration H _hydr ^o and standard enthalpies of interaction H _int ^o of the solutes with their hydration shells were calculated. The data obtained show that dependence of H _int ^o on the number of-CH₂- groups of n-alkyl chain added upon substitution of diketopyrimidine ring is nonlinear. This finding is discussed in connection with results of X-ray diffraction structure determinations for the crystalline compounds.     

计量数比规则与等物质的量规则的比较

指出了计量数比规则存在的缺陷:不利于贯彻有关物质的量及其单位摩尔的SI规定,不能继承当量定律的数据资料,不能表示反应的性质,不能正确表达水硬度、碱度、树脂交换容量及电解定律,缺乏科学的导出过程及计量关系表达式,计算过程繁杂。而等物质的量规则继承和发展了当量定律,使整个滴定分析计算简单规范。     

从科学哲学的视角分析科学课堂教学——以“质量守恒定律”为例

以“质量守恒定律”为例,选取科学革命、科学问题、科学实验、归纳与重复、解释与预测等几个视角对科学课堂教学的各个环节进行了分析。通过分析,各环节中所蕴含的科学哲学内容得以显现,对科学课堂教学的认识更为全面,对科学本质的认识更加深刻。     

Thermodynamics of lonization of aqueous lodic acid,an “almost-strong” electrolyte

We have made calorimetric measurements of enthalpies of dilution of aqueous iodic acid and have used these results for evaluation of the standard enthalpy of ionization of HIO₃(aq.). We have also made calorimetric measurements of enthalpies of addition of perchloric acid solution to aqueous solutions of KIO₃, KNO₃, NaIO₃, and NaNO₃ and have used these results to obtain further values for the standard enthalpy of ionization of HIO₃(aq.). On the basis of all these results, we have selected H^o=–660±125 cal-mole^–1 as the best available standard enthalpy of ionization of HIO₃(aq.) at 298.15°K, compared to the previously accepted –2400 cal-mole^–1. Using the best available K=0.157 for ionization, we also obtain G^o=1097 cal-mole^–1 and S^o=–5.9 cal-^oK^–1-mole^–1 for ionization of HIO₃(aq) at 298.15°K.On study leave from Department of Inorganic and Analytical Chemistry, LaTrobe University, Bundoora, Victoria, 3083, Australia, to University of Lethbridge.On study leave from Department of Chemistry, University of Wollongong, Wollongong, N.S.W. 2500, Australia, to University of Lethbridge.     

Thermodynamics of vaporization of gallium trichloride

The unsaturated and saturated pressures of gallium trichloride vapor were measured by the static method with membrane-gauge manometers in wide pressure (0.2–760 Torr) and temperature (313–1071 K) intervals. Scanning calorimetry was used to determine the thermodynamic characteristics of GaCl₃ fusion. The thermodynamic characteristics were obtained for sublimation, fusion, vaporization, and association in the vapor of GaCl₃ molecules. The enthalpies of formation and the absolute entropies of GaCl₃ in the liquid and gaseous phases and Ga₂Cl₆ in the gaseous phase were calculated using literature data. Published in Russian in Izvestiya Akademii Nauk. Seriya Khimicheskaya, No. 7, pp. 1266–1269, July, 2007.     

Effect of specific adsorption of anions on the kinetics of the current relaxation after pulsed anodic activation of dissolution of hydrophilic metals

Based on the model of spatial separation of the dissolution and passivation of hydrophilic metals, the effect of strong specific adsorption of anions on the shape of curves for the relaxation of anodic current of metals in acid solutions after switching an anodic activation pulse off is considered by using iron as an example.     

Thermochemistry of aqueous solutions of alkylated nucleic acid bases V. Enthalpies of hydration of N-methylated adenines

Enthalpies of solution in water, H _sol ^o , and of sublimation, H _subl ^o , were determined experimentally for a number of crystalline N-methyl adenines: m⁶Ade, m ₂ ^6,6 Ade, m⁹Ade, m ₂ ^6,9 Ade, and m ₃ ^6,6,9 Ade. Derived standard enthalpies of hydration H _hydr ^o , were corrected for the calculated cavity terms H _cav ^o to yield enthalpies of interaction H _int ^o of the solutes with their hydration shells. The increments of H _int ^o per unit area of the water-accessible molecular surface S _B , H _int ^o (CH₃)/S _B (CH₃), for the particular methyl groups: is considered to be the net effect of the gain in the energy resulting from van der Waals' interactions and of the loss in the energy due to polar interactions upon methyl substitution. It proved to vary somewhat numerically in agreement with the theoretically predicted hydration schemes of adenine. Comparison of H _int ^o /S _B value for adenine with those previously determined for uracil and thymine indicates that the aminopurine moiety is less hydrated than the diketopyrimidine ring.     

Computation of the Number of Isomers of Coordination Compounds Containing Identical Monodentate Ligands and Chelating Ligands

This paper outlines a simple method of counting the number of isomers of coordination compounds containing identical monodentate ligands and chelating ligands.