MODEL SIMULATION OF WATER-IN-OIL XANTHAN FERMENTATION

The W/O xanthan fermentation is simulated by integrating the microbial kinetic behaviors and the multiple-phase process characteristics. Model 1 assumes uniform redistribution of cells, substrates and product by frequent droplet breakup and coalescence. Model 2 simulates the system of viscous aqueous phase with minimal droplet breakup and component redistribution. The real fermentation should proceed within the bounds set by the two models. Effects of various parameters are evaluated. The aqueous-phase xanthan concentration (X_n) and volumetric productivity (Q_P) achieved at 200 h are used as the indicators. X_n and Q_P increase with nitrogen-source concentration (S_NO) initially but plateau (Model 1) or decrease slightly (Model 2) at high S_NO. X_n (at 200 h) decreases with increasing aqueous-phase volume fraction (f). Q_P, however, increases with f reflecting its basing on the total dispersion volume. Increasing agitation and aeration result in higher X_n and Q_P. The higher agitation enhances the G/O interfacial oxygen transfer and reduces the droplet size. Increasing aeration improves the G/O interfacial transfer but increases the droplet size. Its net positive effect implies a rate-limiting step at G/O interface. The W/O fermentation can produce far higher X_n (> 200 kg/m3) and Q_P( > 0.8 kg/m3-h) than the conventional fermentation (X_n ～ 50 kg/m3, Q_P ～ 0.5 kg/m3-h).     

Isolation,purification, and characterization of thermophilic laccase from the xerophyte <Emphasis Type="Italic">Cereus pterogonus</Emphasis>

Three laccase temperature isoforms were isolated and purified to homogeneity from the xerophyte plant species Cereus pterogonus. This catalytically active protein exhibited an apparent molecular mass of 137 kDa, 90 kDa, and 43 kDa. Under reducing conditions the enzyme yielded a subunit molecular mass of 43 kDa alone, suggesting that the enzyme is a multimer of its subunits. The enzyme exhibited an optimum pH of 10 with 2,6-dimethoxyphenol used as a substrate. The 137 and 90 kDa forms yielded optimum activity at 90°C; whereas the 43 kDa molecular form yielded optimum activity at 60°C. The enzyme kinetic constant Km remained closely similar for all three enzyme forms, whereas Vmax varied by 25 % overall. The catalytic activity remained above its t_1/2 value in excess of the 30 min denaturation assay period at 60°C and 90°C. These high-temperature isoforms of the plant laccase enzyme with alkaline pH optima can find great industrial use.     

Structural Insights on Mycobacterium tuberculosis Thiazole Synthase—A Molecular Dynamics/Docking Approach

Tuberculosis (TB), an epidemic disease, affects the world with death rate of two million people every year. The bacterium Mycobacterium tuberculosis was found to be a more potent and disease-prolonged bacterium among the world due to multi-drug resistance. Emergence of new drug targets is needed to overcome the bacterial resistance that leads to control epidemic tuberculosis. The pathway thiamine biosynthesis was targeting M. tuberculosis due to its role in intracellular growth of the bacterium. The screening of enzymes involved in thiamin biosynthesis showed novel target thiazole synthase (ThiG) involved in catalysis of rearrangement of 1-deoxy-d-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. We carried out homology modeling for ThiG to understand the structure–function relationship, and the model was refined with MD simulations. The results showed that the model predicted with (α?+?β)₈-fold of synthase family proteins. Molecular docking of ThiG model with substrate DXP showed binding mode and key residues ARG46, ASN69, THR41, and LYS96 involved in the catalysis. First-line anti-tuberculosis drugs were docked with ThiG to identify the inhibition. The report showed the anti-tuberculosis drugs interact well with ThiG which may lead to block thiamin biosynthesis pathway.     

Exploring the Structural Insights on Human Laforin Mutation K87A in Lafora Disease—A Molecular Dynamics Study

Lafora disease (LD) is an autosomal recessive, progressive form of myoclonus epilepsy which affects worldwide. LD occurs mainly in countries like southern Europe, northern Africa, South India, and in the Middle East. LD occurs with its onset mainly in teenagers and leads to decline and death within 2 to 10 years. The genes EPM2A and EPM2B are commonly involved in 90 % of LD cases. EPM2A codes for protein laforin which contains an amino terminal carbohydrate binding module (CBM) belonging to the CBM20 family and a carboxy terminal dual specificity phosphatase domain. Mutations in laforin are found to abolish glycogen binding and have been reported in wet lab methods. In order to investigate on structural insights on laforin mutation K81A, we performed molecular dynamics (MD) simulation studies for native and mutant protein. MD simulation results showed loss of stability due to mutation K87A which confirmed the structural reason for conformational changes observed in laforin. The conformational change of mutant laforin was confirmed by analysis using root mean square deviation, root mean square fluctuation, solvent accessibility surface area, radius of gyration, hydrogen bond, and principle component analysis. Our results identified that the flexibility of K87A mutated laforin structure, with replacement of acidic amino acid to aliphatic amino acid in functional CBM domain, have more impact in abolishing glycogen binding that favors LD.     

Purification and biochemical characterization of two major thermophilic xylanase isoforms (T70 and T90) from xerophytic Opuntia vulgaris plant spp.

Thermostable xylanase isoforms T₇₀ and T₉₀ were purified and characterized from the xerophytic Opuntia vulgaris plant species. The enzyme was purified to homogeneity employing three consecutive steps. The purified T₇₀ and T₉₀ isoforms yielded a final specific activity 134.0 and 150.8 U mg^?1 protein, respectively. The molecular mass of these isoforms was determined to be 27 kDa. The optimum pH for the T₇₀ and T₉₀ xylanase isoforms was 5.0 and the temperature for optimal activity was 70 and 90 °C, respectively. The Km value of T₇₀ and T₉₀ enzyme isoforms was 3.49, 2.1 mg ml^?1, respectively when oat spelt xylan was used as a substrate. The T₇₀ had a Vmax of 10.4 μmol min^?1 mg^?1, and T₉₀ had a Vmax of 8.9 μmol min^?1 mg^?1, respectively. In the presence of 10 mM Co²⁺, and Mn²⁺ the activity of T₇₀ and T₉₀ isoforms increased, where as 90 % inhibition was noted with of the use 10 mM Hg²⁺, Cd²⁺, Cu²⁺, Zn²⁺ while partial inhibition was observed in the presence of Fe³⁺, Ni²⁺, Ca²⁺and Mg²⁺. The T₇₀ and T₉₀ isoforms retained nearly 50 % activity in the presence of 2.0 M urea, while use of 40 mM SDS lowered the activity nearly 38–41 %. The substrate specificity of both T₇₀ and T₉₀ isoforms showed maximum activity for oat spelt xylan. Western blot, immunodiffusion, and in vitro inhibition assays confirmed reactivity of the T₉₀ isoform with polyclonal anti-T₉₀ antibody raised in rabbit, as well as cross-reactivity of the antibody with the T₇₀ xylanase isoform.     

Thermophilic laccase from xerophyte species Opuntia vulgaris

Two laccase temperature isoforms capable of oxidizing phenolic compounds to quinones were isolated and purified to homogeneity from the cladodes of the xerophyte species Opuntia vulgaris. These catalytically active proteins exhibit apparent molecular masses of 137 and 90 kDa. Under reducing conditions, both isoforms yielded a subunit molecular mass of 43 kDa, suggesting that the enzyme is a multimer of the 43 kDa subunit. The 137 kDa isoform when heated at 80°C for 3min generated three polypeptide bands on activity stained polyacrylamide gels exhibiting 137, 90 and 43 kDa molecular forms. All isoforms of the enzyme exhibited an optimum pH of 10 when 2,6‐dimethoxyphenol was used as a substrate. The optimum temperature of the 137 kDa enzyme form was noted to be 80°C and that of the 90 kDa enzyme form was 70°C. Denaturation kinetics of both the laccase isoforms carried out at their respective optimum temperatures for 30 min exhibited enzyme activity in excess of their t_1/2 values throughout the assay period. The K_m for the 137 kDa form was determined to be 2.2 ± 0.3 mm and the V_max was 2.8 ± 0.2 IU/mL. These high temperature stable laccase isoforms having alkaline pH optima can find significant industrial use. Copyright © 2010 John Wiley & Sons, Ltd.     

Dielectric and spectroscopic investigations of lithium aluminium zirconium silicate glasses mixed with TiO2

Li₂O–Al₂O₃–ZrO₂–SiO₂ glasses mixed with different concentrations of TiO₂ (ranging from 0 to 5.0?mol%) were synthesised and their dielectric properties (dielectric constant, loss tan?δ, a.c. conductivity σ) investigated over wide ranges of frequency and temperature. Studies of optical absorption, ESR, infrared (IR) and photoluminescence properties have also been undertaken. A decrease in dielectric parameters with increasing concentrations of TiO₂ has been observed and this is attributed to an increasing proportion of titanium ions occupying network-forming positions rather than going into interstitial positions. A.C. conductivity in the high-temperature region appears to be connected both to electronic transfer and ionic movements, but conduction attributed to such processes seems to be hampered by the entry of titanium ions into the network-forming positions. Analysis of the results of the IR spectral studies have indicated that there is a decreasing degree of disorder in the glass network with increasing TiO₂ content. The optical absorption and ESR spectral studies have revealed that titanium ions exist in both Ti³⁺ and Ti⁴⁺ states in the glasses. Luminescence spectra exhibited an emission band in the visible region and the luminescence efficiency increased with TiO₂ content. The excitation of substitutionally positioned octahedral Ti⁴⁺ ions is identified as being responsible for the observed luminescence emission.     

Preparation and Characterization of Mn Doped ZnO Nanorods

Physics of the Solid State - Mn doped ZnO nanorods were prepared by chemical precipitation method. The micro-structural and structural properties of the nanorods were calculated from the X-ray...     

Xerophytic <Emphasis Type="Italic">Cereus pterogonus</Emphasis> xylose isomerase is a thermostable enzyme

A thermostable xylose isomerase (D-xylose ketol-isomerase; EC.5.3.1.5) was isolated from the cladodes of xerophytic Cereus pterogonus. The enzyme was purified to homogeneity. SDS-PAGE analysis estimated the molecular mass of the enzyme protein at 66 kDa. The enzyme exhibited temperature optima at 60 and 80°C. Though the enzyme activity was optimum at pH 7.0, the enzyme was found to be stable in both acidic and basic pH ranges in the presence of divalent ions Mn²⁺, Co²⁺, and Mg²⁺. This enzyme may find potential use in the food and beverage industry. Published in Khimiya Prirodnykh Soedinenii, No. 2, pp. 169–170, March–April, 2008.     

Spectral and fluorescent kinetics features of Nd3+ ion in Nb2O5, Ta2O5 and La2O3 mixed lithium zirconium silicate glasses

A sensitive competitive flow injection chemiluminescence (CL-FIA) immunoassay for immunoglobulin G (IgG) was developed using gold nanoparticle as CL label. In the configuration, anti-IgG antibody was immobilized on a glass capillary column surface by 3-(aminopropyl)-triethoxysilane and glutaraldehyde to form immunoaffinity column. Analyte IgG and gold nanoparticle labeled IgG were passed through the immunoaffinity column mounted in a flow system and competed for the surface-confined anti-IgG antibody. CL emission was generated from the reaction between luminol and hydrogen peroxide in the presence of Au (III), generated from chemically oxidative dissolution of gold nanoparticle by an injection of 0.10 mol L⁻¹ HCl–0.10 mol L⁻¹ NaCl solution containing 0.10 mmol L⁻¹ Br₂. The concentration of analyte IgG was inversely related to the amount of bound gold nanoparticle labeled IgG and the CL intensity was linear with the concentration of analyte IgG from 1.0 ng mL⁻¹ to 40 ng mL⁻¹ with a detection limit of 5.2 × 10⁻¹⁰ g mL⁻¹. The whole assay time including the injections and washing steps was only 30 min for one sample, which was competitive with CL immunoassays based on a gold nanoparticle label and magnetic separation. This work demonstrates that the CL immunoassay incorporation of nanoparticle label and flow injection is promising for clinical assay with sensitivity and high-speed.