A metabolically engineered spin-labeling approach for studying glycans on cells

Metabolic glycan engineering (MGE) coupled with nitroxide spin-labeling (SL) was utilized to investigate the heterogeneous environment of cell surface glycans in select cancer and normal cells. This approach exploited the incorporation of azides into cell surface glycans followed by a click reaction with a new nitroxide spin label. Both sialic acid and N-acetylglucosamine (GlcNAc) were targeted for spin labelling. Although each of these moieties experiences a diverse and heterogeneous glycan environment, their EPR spectra and hence mobility are both characterized as a linear combination of two distinct spectra where one component reflects a highly mobile or uncrowded micro-environment with the second component reflecting more restricted motion, reflective of increased crowding and packing within the glycocalyx. What differs among the spectra of the targeted glycans is the relative percentage of each component, with sialic acid moieties experiencing on average an ∼80% less crowded environment, where conversely GlcNAc/GalNAz labeled sites reported on average a ∼50% more crowded environment. These distinct environments are consistent with the organization of sugar moieties within cellular glycans where some residues occur close to the cell membrane/protein backbone (i.e. more restricted) and others are more terminal in the glycan (i.e. more mobile). Strikingly, different cell lines displayed varied relative populations of these two components, suggesting distinctive glycan packing, organization, and composition of different cells. This work demonstrates the capability of SDSL EPR to be a broadly useful tool for studying glycans on cells, and interpretation of the results provides insights for distinguishing the differences and changes in the local organization and heterogeneity of the cellular glycocalyx.

Metabolic glycan engineering (MGE) coupled with nitroxide spin-labeling (SL) was utilized to investigate the heterogeneous environment of cell surface glycans in select cancer and normal cells.     

Birnbaum‐Saunders distribution: A review of models,analysis, and applications

Birnbaum and Saunders introduced a two‐parameter lifetime distribution to model the fatigue life of a metal, subject to cyclic stress. Since then, extensive work has been done on this model providing different interpretations, constructions, generalizations, inferential methods, and extensions to bivariate, multivariate, and matrix‐variate cases. More than 200 papers and one research monograph have already appeared describing all these aspects and developments. In this paper, we provide a detailed review of all these developments and, at the same time, indicate several open problems that could be considered for further research.     

Mirror-Image Oligonucleotides: History and Emerging Applications

As chiral molecules, naturally occurring d -oligonucleotides have enantiomers, l -DNA and l -RNA, which are comprised of l -(deoxy)ribose sugars. These mirror-image oligonucleotides have the same physical and chemical properties as that of their native d -counterparts, yet are highly orthogonal to the stereospecific environment of biology. Consequently, l -oligonucleotides are resistant to nuclease degradation and many of the off-target interactions that plague traditional d -oligonucleotide-based technologies; thus making them ideal for biomedical applications. Despite a flurry of interest during the early 1990s, the inability of d - and l -oligonucleotides to form contiguous Watson–Crick base pairs with each other has ultimately led to the perception that l -oligonucleotides have only limited utility. Recently, however, scientists have begun to uncover novel strategies to harness the bio-orthogonality of l -oligonucleotides, while overcoming (and even exploiting) their inability to Watson–Crick base pair with the natural polymer. Herein, a brief history of l -oligonucleotide research is presented and emerging l -oligonucleotide-based technologies, as well as their applications in research and therapy, are presented.     

Novel nonlinear wave equation: Regulated rogue waves and accelerated soliton solutions

A new exactly solvable ($1+1$)-dimensional complex nonlinear wave equation exhibiting rich analytic properties has been introduced. A rogue wave (RW), localized in space–time like Peregrine RW solution, though richer due to the presence of free parameters is discovered. This freedom allows to regulate amplitude and width of the RW as needed. The proposed equation allows also an intriguing topology changing accelerated dark soliton solution in spite of constant coefficients in the equation.     

Isolation and characterization of 4-chlorophenol degrading bacterial strain from pharmaceutical xenobiotic compounds contaminated soil using enrichment technique

4- chlorophenol is available as the fundamental basic compound of numerous manufactured organics. It is produced from various sources like herbicides, wood additives, oil industries, pharmaceutical drugs and so on. It can be removed from the effluent by various ways but most effective method is bioremediation. In present study, aerobic bacterial strain was isolated from soil that was contaminated with pharmaceutical xenobiotic compounds using enrichment technique with 500 ppm of 4-chlorophenol as a sole source of carbon and energy. Colonies were isolated after 24 h of incubation on petri plate by media enrichment with 500 ppm of 4- chlorophenol and serial dilution method. 18 colonies were isolated and examined for their ability to degrade 500 ppm of 4-chlorophenol. The most potent strain, C17 was able to remove nearly ～99.93% of 4-chlorophenol in 24 h, 37 °C temperature and 6.8 pH. Based on morphological, biochemical, nucleotide homology and phylogenetic analysis the strain was found to have maximum similarity (98.98%) with Bacillus timonensis strain 10403023.     

Lanthanide‐Doped Nanocrystals: Strategies for Improving the Efficiency of Upconversion Emission and Their Physical Understanding

The fundamental understanding of lanthanide‐doped upconverted nanocrystals remains a frontier area of research because of potential applications in photonics and biophotonics. Recent studies have revealed that upconversion luminescence dynamics depend on host crystal structure, size of the nanocrystals, dopant concentration, and core–shell structures, which influence site symmetry and the distribution and energy migration of the dopant ions. In this review, we bring to light the influences of doping/co‐doping concentration, crystal phase, crystal size of the host, and core–shell structure on the efficiency of upconversion emission. Furthermore, the lattice strain, due to a change in the crystal phase and by the core–shell structure, strongly influences the upconversion emission intensity. Analysis suggests that the local environment of the ion plays the most significant role in modification of radiative and nonradiative relaxation mechanisms of overall upconversion emission properties. Finally, an outlook on the prospects of this research field is given.     

Influence of Size and Shape on the Photocatalytic Properties of SnO2 Nanocrystals

Tuning the functional properties of nanocrystals is an important issue in nanoscience. Here, we are able to tune the photocatalytic properties of SnO₂ nanocrystals by controlling their size and shape. A structural analysis was carried out by using X‐ray diffraction (XRD)/Rietveld and transmission electron microscopy (TEM). The results reveal that the number of oxygen‐related defects varies upon changing the size and shape of the nanocrystals, which eventually influences their photocatalytic properties. Time‐resolved spectroscopic studies of the carrier relaxation dynamics of the SnO₂ nanocrystals further confirm that the electron–hole recombination process is controlled by oxygen/defect states, which can be tuned by changing the shape and size of the materials. The degradation of dyes (90 %) in the presence of SnO₂ nanoparticles under UV light is comparable to that (88 %) in the presence of standard TiO₂ Degussa P‐25 (P25) powders. The photocatalytic activity of the nanoparticles is significantly higher than those of nanorods and nanospheres because the effective charge separation in the SnO₂ nanoparticles is controlled by defect states leading to enhanced photocatalytic properties. The size‐ and shape‐dependent photocatalytic properties of SnO₂ nanocrystals make these materials interesting candidates for photocatalytic applications.     

Asymptotic behavior and finite element error estimates of Kelvin-Voigt viscoelastic fluid flow model

In this article, the convergence of the solution of the Kelvin-Voigt viscoelastic fluid flow model to its steady state solution with exponential rate is established under the uniqueness assumption. Then, a semidiscrete Galerkin method for spatial direction keeping time variable continuous is considered and asymptotic behavior of the semidiscrete solution is derived. Moreover, optimal error estimates are achieved for large time using steady state error estimates. Based on linearized backward Euler method, asymptotic behavior for the fully discrete solution is studied and optimal error estimates are derived for large time. All the results are even valid for κ→0, that is, when the Kelvin-Voigt model converges to the Navier-Stokes system. Finally, some numerical experiments are conducted to confirm our theoretical findings.     

Nitrite and Nitric Oxide Interconversion at Mononuclear Copper(II): Insight into the Role of the Red Copper Site in Denitrification

Nitrite (NO₂⁻) and nitric oxide (NO) interconversion is crucial for maintaining optimum NO flux in mammalian physiology. Herein we demonstrate that [ L ₂Cu^II(nitrite)]⁺ moieties (in 2 a and 2 b ; where, L = Me₂PzPy and Me₂PzQu ) with distorted octahedral geometry undergo facile reduction to provide tetrahedral [ L ₂Cu^I]⁺ (in 3 a and 3 b ) and NO in the presence of biologically relevant reductants, such as 4-methoxy-2,6-di-tert-butylphenol (4-MeO-2,6-DTBP, a tyrosine model) and N-benzyl-1,4-dihydronicotinamide (BNAH, a NAD(P)H model). Interestingly, the reaction of excess NO gas with [ L ₂Cu^II(MeCN)₂]²⁺ (in 1 a ) provides a putative {CuNO}¹⁰ species, which is effective in mediating the nitrosation of various nucleophiles, such as thiol and amine. Generation of the transient {CuNO}¹⁰ species in wet acetonitrile leads to NO₂⁻ as assessed by Griess assay and ¹⁴N/¹⁵N-FTIR analyses. A detailed study reveals that the bidirectional NO_x-reactivity, namely, nitrite reductase (NIR) and NO oxidase (NOO), at a common Cu^II site, is governed by the geometric-preference-driven facile Cu^II/Cu^I redox process. Of broader interest, this study not only highlights potential strategies for the design of copper-based catalysts for nitrite reduction, but also strengthens the previous postulates regarding the involvement of red copper proteins in denitrification.