Hydrophilic interaction chromatography of nucleoside triphosphates with temperature as a separation parameter

Eight deoxynucleoside triphosphates (dNTPs) and nucleoside triphosphates (NTPs): ATP, CTP, GTP, UTP, dATP, dCTP, dGTP and dTTP, were separated with two 15 cm ZIC-pHILIC columns coupled in series, using LC-UV instrumentation. The polymer-based ZIC-pHILIC column gave significantly better separations and peak shape than a silica-based ZIC-HILIC column. Better separations were obtained with isocratic elution as compared to gradient elution. The temperature markedly affected the selectivity and could be used to fine tune separation. The analysis time was also affected by temperature, as lower temperatures surprisingly reduced the retention of the nucleotides. dNTP/NTP standards could be separated in 35 min with a flow rate of 200 μL/min. In Escherichia coli cell culture samples dNTP/NTPs could be selectively separated in 7 0min using a flow rate of 100 μL/min.     

The strength of the σ-, π- and δ-bonds in Re2Cl 8 2−

The geometry of Re₂Cl₈²⁻ has been optimized for the eclipsed (D _4h ) equilibrium conformation and for the staggered (D _4d ) conformation at BP86/TZ2P. The nature of the Re–Re bond which has a formal bond order four has been studied with an energy decomposition analysis (EDA). The EDA investigation indicates that the contribution of the b ₂ (δ _xy ) orbitals to the Re–Re bond in the ground state is negligibly small. The vertical excitation of one and two electrons from the bonding δ orbital into the antibonding δ* orbitals yielding the singly and doubly excited states and gives a destabilization of 17.5 and 36.1 kcal/mol, respectively, which is nearly the same as the total excitation energies. The preference for the D _4h geometry with eclipsing Re–Cl bonds is explained in terms of hyperconjugation rather than δ bonding. This is supported by the calculation of the triply bonded Re₂Cl₈ which also has an eclipsed energy minimum structure. The calculations also suggest that the Re–Re triple bond in Re₂Cl₈ is stronger than the Re–Re quadruple bond in Re₂Cl₈²⁻. A negligible contribution of the δ orbital to the metal–metal bond strength is also calculated for Os₂Cl₈ which is isoelectronic with Re₂Cl₈²⁻. Contribution of the Mark S. Gordon 65th Birthday Festschrift Issue. Theoretical Studies of Inorganic Compounds. 38. Part 37 (2006) Bessac F, Frenking G, Inorg Chem 45:6956.     

Nonpolar dihydrogen bonds--on a gliding scale from weak dihydrogen interaction to covalent H-H in symmetric radical cations [HnE-H-H-EHn]+

The electronic structures and bonding patterns for a new class of radical cations, [HnE-H-H-EHn]+ (EHn=element hydride, E=element of Groups 15-18), have been investigated by applying quantum-chemical methods. All structures investigated give rise to symmetric potential energy minimum structures. We envisage clear periodic trends. The H--H bond length is shorter for elements toward the bottom of the periodic table of elements, and a short H--H bond corresponds to accumulation of electron density in the central H--H region. All [HnE-H-H-EHn]+ of Groups 15-17 are thermodynamically unstable towards loss of either H2 or H. The barriers for these dissociations are rather low. The Group 18 congeners, except E=Xe, appear to be global minima of the respective potential energy surfaces. The findings are discussed in terms of H2 bond activation, and a general mechanistic scheme for the standard reduction process 2H+ + 2e(-) --> H2 is given. Finally, it is proposed that some of the symmetric radical cations are likely to be observed in mass spectrometric or matrix isolation experiments.     

Electronic structure of CO--an exercise in modern chemical bonding theory

This paper discusses recent progress that has been made in the understanding of the electronic structure and bonding situation of carbon monoxide which was analyzed using modern quantum chemical methods. The new results are compared with standard models of chemical bonding. The electronic charge distribution and the dipole moment, the nature of the HOMO and the bond dissociation energy are discussed in detail.     

Transition metal-carbon complexes. A theoretical study

The equilibrium geometries and bond dissociation energies of 16VE and 18VE complexes of ruthenium and iron with a naked carbon ligand are reported using density functional theory at the BP86/TZ2P level. Bond energies were also calculated at CCSD(T) using TZ2P quality basis sets. The calculations of [Cl2(PMe3)2Ru(C)] (1Ru), [Cl2(PMe3)2Fe(C)] (1Fe), [(CO)2(PMe3)2Ru(C)] (2Ru), [(CO)2(PMe3)2Fe(C)] (2Fe), [(CO)4Ru(C)] (3Ru), and [(CO)4Fe(C)] (3Fe) show that 1Ru has a very strong Ru-C bond which is stronger than the Fe-C bond in 1Fe. The metal-carbon bonds in the 18VE complexes 2Ru-3Fe are weaker than those in the 16VE species. Calculations of the related carbonyl complexes [(PMe3)2Cl2Ru(CO)] (4Ru), [(PMe3)2Cl2Fe(CO)] (4Fe), [(PMe3)2Ru(CO)3] (5Ru), [(PMe3)2Fe(CO)3] (5Fe), [Ru(CO)5] (6Ru), and [Fe(CO)5] (6Fe) show that the metal-CO bonds are much weaker than the metal-C bonds. The 18VE iron complexes have a larger BDE than the 18VE ruthenium complexes, while the opposite trend is calculated for the 16VE compounds. Charge and energy decomposition analyses (EDA) have been carried out for the calculated compounds. The Ru-C and Fe-C bonds in 1Ru and 1Fe are best described in terms of two electron-sharing bonds with sigma and pi symmetry and one donor-acceptor pi bond. The bonding situation in the 18 VE complexes 2Ru-3Fe is better described in terms of closed shell donor-acceptor interactions in accordance with the Dewar-Chatt-Duncanson model. The bonding analysis clearly shows that the 16VE carbon complexes 1Ru and 1Fe are much more strongly stabilized by metal-C sigma interactions than the 18VE complexes which is probably the reason why the substituted homologue of 1Ru could become isolated. The EDA calculations show that the nature of the TM-C and TM-CO binding interactions resembles each other. The absolute values for the energy terms which contribute to Delta(Eint) are much larger for the carbon complexes than for the carbonyl complexes, but the relative strengths of the energy terms are not very different from each other. The pi bonding contribution to the orbital interactions in the carbon complexes is always stronger than sigma bonding. There is no particular bonding component which is responsible for the reversal of the relative bond dissociation energies of the Ru and Fe complexes when one goes from the 16VE complexes to the 18VE species. That the 18 VE compounds have longer and weaker TM-C and TM-CO bonds than the respective 16 VE compounds holds for all complexes. This is because the LUMO in the 16 VE species is a sigma-antibonding orbital which becomes occupied in the 18 VE species.     

Synthesis of complex fused polycyclic heterocycles utilizing IMDAF reactions of allylamino- or allyloxy-furyl(hetero)arenes

Arenes and heteroarenes carrying a halogen and an amino- or hydroxy group have been converted to allylamino- or allyloxy-furyl-(hetero)arenes. These compounds underwent IMDAF reactions to give complex fused polycyclic heterocycles. The reactivity of the substrates was highly dependent on the detailed substitution pattern, however cyclizations occurred with high stereoselectivity in most cases. Experimental findings regarding reactivity and stereoselectivity were supported by calculations.