Infrared-induced conformational isomerization and vibrational relaxation dynamics in melatonin and 5-methoxy-N-acetyl tryptophan methyl amide

The conformational isomerization dynamics of melatonin and 5-methoxy N-acetyltryptophan methyl amide (5-methoxy NATMA) have been studied using the methods of IR-UV hole-filling spectroscopy and IR-induced population transfer spectroscopy. Using these techniques, single conformers of melatonin were excited via a well-defined NH stretch fundamental with an IR pump laser. This excess energy was used to drive conformational isomerization. By carrying out the infrared excitation early in a supersonic expansion, the excited molecules were re-cooled into their zero-point levels, partially re-filling the hole created in the ground state population of the excited conformer, and creating gains in population of the other conformers. These changes in population were detected using laser-induced fluorescence downstream in the expansion via an UV probe laser. The isomerization quantum yields for melatonin show some conformation specificity but no hint of vibrational mode specificity. In 5-methoxy NATMA, no isomerization was observed out of the single conformational well populated in the expansion in the absence of the infrared excitation. In order to study the dependence of the isomerization on the cooling rate, the experimental arrangement was modified so that faster cooling conditions could be studied. In this arrangement, the pump and probe lasers were overlapped in space in the high density region of the expansion, and the time dependence of the zero-point level populations of the conformers was probed following selective excitation of a single conformation. The analysis needed to extract isomerization quantum yields from the timing scans was developed and applied to the melatonin timing scans. Comparison between the frequency and time domain isomerization quantum yields under identical experimental conditions produced similar results. Under fast cooling conditions, the product quantum yields were shifted from their values under standard conditions. The results for melatonin are compared with those for N-acetyl tryptophan methyl amide.     

On vaccination controls for the SEIR epidemic model

This paper presents a simple continuous-time linear vaccination-based control strategy for a SEIR (susceptible plus infected plus infectious plus removed populations) disease propagation model. The model takes into account the total population amounts as a refrain for the illness transmission since its increase makes more difficult contacts among susceptible and infected. The control objective is the asymptotically tracking of the removed-by-immunity population to the total population while achieving simultaneously the remaining population (i.e. susceptible plus infected plus infectious) to asymptotically tend to zero.     

A Yeast Chemical Genetic Screen Identifies Inhibitors of Human Telomerase

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Highlights? Growth arrest induced by human telomerase in yeast is chemically reversible ? Readout is sensitive to telomerase catalytic activity and telomere recruitment ? Three cell-permeable compounds also inhibit purified human telomerase ? Yeast can be successfully used to screen for human telomerase inhibitors     

Phosphine and Thiophene Cyclopalladated Complexes: Hydrolysis Reactions in Strong Acidic Media

The mechanisms for the hydrolysis of organopalladium complexes [Pd(CNN)R]BF₄ (R=P(OPh)₃, PPh₃, and SC₄H₈) were investigated at 25 °C by using UV/Vis absorbance measurements in 10 % v/v ethanol/water mixtures containing different sulphuric acid concentrations in the 1.3–11.7 M range. In all cases, a biphasic behavior was observed with rate constants k_1obs, which corresponds to the initial step of the hydrolysis reaction, and k_2obs, where k_1obs>k_2obs. The plots of k_1obs and k_2obs versus sulfuric acid concentration suggest a change in the reaction mechanism. The change with respect to the k_1obs value corresponds to 35 %, 2 %, and 99 % of the protonated complexes for R=PPh₃, P(OPh)₃, and SC₄H₈, respectively. Regarding k_2obs, the change occurred in all cases at about 6.5 M H₂SO₄ and matched up with the results reported for the hydrolysis of the 2‐acetylpyridinephenylhydrazone (CNN) ligand. By using the excess acidity method, the mechanisms were elucidated by carefully looking at the variation of k_i,_obs (i=1,2) versus ${c_{{\rm{H}}^ + } }$ . The rate‐determining constants, k_0,A‐1, k_0,A‐2, and k_0,A‐SE2 were evaluated in all cases. The R=P(OPh)₃ complex was most reactive due to its π‐acid character, which favors the rupture of the trans nitrogen–palladium bond in the A‐2 mechanism and also that of the pyridine nitrogen–palladium bond in the A‐1 mechanism. The organometallic bond exerts no effect on the relative basicity of the complexes, which are strongly reliant on the substituent.     

Ultrafast dynamics of aniline in the 294-234 nm excitation range: the role of the πσ∗ state

The ultrafast relaxation of jet-cooled aniline was followed by time-resolved ionization, after excitation in the 294-234 interval. The studied range of energy covers the absorption of the two bright ππ? excitations, S(1) and S(3), and the almost dark S(2) (πσ?) state. The employed probe wavelengths permit to identify different ultrafast time constants related with the coupling of the involved electronic surfaces. A τ(1) = 165 ± 30 fs lifetime is attributed to dynamics along the S(2) (πσ?) repulsive surface. Other relaxation channels as the S(1)→S(0) and S(3)→S(1) internal conversion are also identified and characterized. The work provides a general view of the photophysics of aniline, particularly regarding the role of the πσ? state. This state appears as minor dissipation process due to the ineffective coupling with the bright S(1) and S(3) states, being the S(1)→S(0) internal conversion the main non-radiative process in the full studied energy range. Additionally, the influence of the off-resonance adiabatic excitation of higher energy electronic states, particularly S(3), is also observed and discussed.     

Intercalation of ethidium into triple-strand poly(rA).2poly(rU): a thermodynamic and kinetic study

The kinetics and equilibria of the interaction of ethidium bromide (EB) with the triple-stranded RNA, poly(rA).2poly(rU), have been investigated by stopped-flow, absorption, fluorescence, and circular dichroism methods; to properly assess the effect of the third strand on the polymer molar properties, molar volumes, adiabatic compressibilities, and heats of melting have also been measured for both poly(rA).2poly(rU) and poly(rA).poly(rU). The melting experiments reveal that ethidium tends to destabilize the triplex, whereas it stabilizes the duplex; however, the triplex/ethidium system in 0.1 M NaCl is stable below 37 degrees C. The static titrations reveal that one ethidium ion binds every three base triplets of the polymer; on the basis of the excluded-site model, this feature suggests intercalation, as in the duplex, but the binding affinity for the triplex is weaker compared to that for the duplex. The kinetic experiments displayed a two-phase behavior, which was rationalized assuming the sequence D + S right arrow over left arrow DS(I), DS(I) + S right arrow over left arrow DS(II) + S (D = drug, S = site), the second step involving direct transfer of the drug between strands. Comparison with the duplex/EB system reveals that the additional strand of poly(U), present in the triplex, hinders the formation of the intermediate complex DS(I), while stabilizing the structure of the final DS(II) complex by hampering the partial slipping out of the dye from the triplex cavity.     

Headspace-solid-phase microextraction preconcentration of phenols, indoles and on-fibre derivatised volatile fatty acids in liquid and gas samples from cow slurries

Odorous organic compounds from liquid and gas samples of animal wastes were studied by headspace (HS)-solid-phase microextraction (SPME)-GC-MS. 1-Pirenyldiazomethane (PDAM) was adsorbed/absorbed on the SPME fibre in order to obtain the corresponding ester derivatives during the preconcentration step. The SPME fibre was immersed into a PDAM solution. Then, the SPME fibre was withdrawn and exposed to the HS of the liquid cow slurry. This way derivatisation of VFAs took place in the SPME fibre together with the preconcentration of the rest of the analytes of interest. The analytes were desorbed in the hot injection port (300 degrees C) of a GC-MS for 3 min. Four different fibre types and different immersion periods of the fibre in the PDAM solution were studied in order to obtain the best sensitivity with the selected fibre. Accuracy, precision and the LODs were calculated using spiked liquid and gas samples. The possibility of storing liquid samples after sampling by preconcentration on the fibre was also considered. Storage time and temperature were studied. The optimised method was applied to the determination of the analytes in liquid and gas samples from cow slurries from an intensive production farm.     

Stereocontrolled conjugate additions to dihydroindolizinone systems. Synthesis of enantiopure polysubstituted tetrahydropyrrolo[2,1-a]isoquinolones

Conjugate addition reactions of various types of nucleophiles to the γ-lactam unit of dihydroindolizinone systems have been studied. The addition of cuprates, amines or stabilized carbanions requires the activation of the unsaturated bicyclic lactam with a EWG at C-2, while sulfur-stabilized carbanions are reactive enough to add to the unsubstituted lactam. The stereochemical outcome of the conjugate addition reaction depends on the nature of the substituent at the angular position, and the incoming nucleophile. Thus 1,10b-cis or 1,10b-trans diastereomers could be obtained selectively with dr>95:5. The tandem conjugate addition–alkylation also takes place in good yields. These reactions have been applied to the synthesis of enantiopure tetrahydropyrrolo[2,1-a]isoquinolines.     

Exponential stability of simultaneously triangularizable switched systems with explicit calculation of a common Lyapunov function

In this note, a common quadratic Lyapunov function is explicitly calculated for a linear hybrid system described by a family of simultaneously triangularizable matrices. The explicit construction of such a function allows not only obtaining an estimate of the convergence rate of the exponential stability of the switched system under arbitrary switching but also calculating an upper bound for the output during its transient response. Furthermore, the presented result is then extended to the case where the system is affected by parametric uncertainty, providing the corresponding results in terms of the nominal matrices and uncertainty bounds.