Plasmids from thermophilicClostridia

Applied Biochemistry and Biotechnology - Thus, since the first publication (1987) on the detection of plasmids in thermophilic Clostridia, nearly 10 of their cryptic plasmids have been discovered....     

A weight-function approach for determining watershed initial conditions for combustion waves

In many generic combustion models, one finds that a combustionwave will develop with a specific wave speed. However, thereare possible initial temperature profiles which do not evolveinto such waves, but rather die out to the ambient temperature.There can exist, in some models, a clear distinction betweenthose initial conditions that do evolve into combustion wavesand those that do not; this is sometimes referred to as thewatershed initial condition. When fuel consumption is consideredto be negligible, analytical methods can be used to obtain theexact watershed. In this paper, we consider the problem of determiningpseudo-watersheds and ascertaining the relationship betweenthese pseudo-watersheds and the exact watersheds. In the processa novel weight-function approach for infinite spatial domainsis developed.     

Enzyme self-inactivation is a main limitation of the preparation of eicosanoids

Synthesis of prostanoids is accompanied by various processes reducing the product yield. These processes are also known to affect syntheses of thromboxane (TX) and 12(S)-hydroxy-5(Z),8(Z),10(E),14(Z)-eicosatetraenoic acid (12-HETE). Partially purified preparations of TX synthase and prostaglandin (PG) synthase were used to optimize TX synthesis with respect to concentrations of the enzymes and eicosapolyenoic acid (EPA). Conditions for the maximum product yield and the minimum consumption of enzymes were determined. Consumption of the TX synthase was large owing to its inactivation during the reaction and the nonenzymatic destruction of the intermediate product PG-endoperoxide. Separate addition of PG and TX synthases increased the product yield by preventing EPA sorption on ballast proteins. Microsomal 12-lipoxygenase (12-LO) was also shown to be inactivated during the reaction, and this process was the major limitation of 12-HETE synthesis. Lipoxygenase reaction in the presence of some reducing agents led to a considerable increase of the 12-HETE yield, supposedly by preventing further oxidation of the 12-LO reaction product 12-hydroperoxy derivative of eicosatetraenoic acid. The possibility of using human blood platelet microsomes for preparation of some derivatives of EPAs is discussed.     

Laccase of Coriolus zonatus

Laccase is one of the lignolytic enzymes found in liquid cultures of the fungus Coriolus zonatus in defined medium. The enzyme was isolated from culture liquid and characterized. Laccase from C. zonatus is a single-chain protein with a molecular mass of 60 kDa. Carbohydrate moiety of enzyme consisted of mannose, galactose and N-acetyl-glucosamine in a ratio of 6:2:0,6 respectively, and comprised 10% of the entiremolecule lsoelectric point was detected at pH 4.6. Laccase was found to have a pH optimum of 4.9 and temperature optimum of 55°C. Substrate specificity studies were conducted with catechol, K-ferrocyanide, hydroquinone, and sinapinic acid as substrates. The highest efficiency of catalysis was observed with sinapic acid as the substrate. The kinetic constants k _cat and K₂₈ of this reaction were 624 s⁻¹ and 7 μM, respectively.     

Direct and electrically wired bioelectrocatalysis by hydrogenase from Thiocapsa roseopersicina.

Hydrogen enzyme electrodes based on direct and mediated bioelectrocatalysis were developed. Direct bioelectrocatalysis of hydrogen oxidation/evolution was observed for hydrogenase adsorbed on carbon filament material. The equilibrium hydrogen potential was achieved on mediatorless hydrogen enzyme electrodes in hydrogen atmosphere. The electrocatalytic activity of hydrogenase in direct bioelectrocatalysis of hydrogen oxidation was two orders of magnitude higher compared to platinum. The reported electrode remained 50% activity after 6 months of storage with periodical testing. Wired bioelectrocatalysis was achieved by adsorption of hydrogenase onto electropolymerized redox mediator N-methyl-N'-(12-pyrrol-1-yl-dodecyl)-4,4'-bipyridinium ditetrafluoroborate.     

Cell biosensor for detection of phenol in aqueous solutions

A microbial sensor for concentration measurement of phenol in aqueous solutions has been developed. Phenol-utilizing cellsPseudomonas putida GFS-8 immobilized in poly(vinyl)alcohol cryogel were used as a biological transducer. Relationships between phenol concentration in the activating medium and endogenic cell respiration have been established. Cell respiration and phenol concentration in the assay solution positively correlated at a phenol concentration range of 0.1–2.0 mg/L and were linearly dependent in the range of 0.1–1.0 mg/L. A Clark membrane electrode was the physiochemical transducer. The assay may be completed within 5 min. The cells oxidize phenol, pyrocatechol, mesityl oxide, aniline, and do not react with a number of xenobiotics, sugars, and alcohol. With the exception of aniline, most components found in waste waters from phenol production affect neither the assay process nor the ability of these cells to use phenol as exogenic respiratory substrate. The immobilized cells retained their ability to utilize phenol as an exogenic respiratory substrate for up to 1 mo.     

Laccase

The present review was dedicated to laccase—the enzyme, belonging to the group of multinuclear copper, containing so called “blue” oxidases. The molecular structure, metals content, substrate specificity, and other physicochemical properties were described in this article. The authors considered the mechanism of enzymatic action and electrocatalytic oxygen reduction catalyzed by laccase in details. The data of laccase application in organic synthesis, biosensors, and immunoenzyme assay were presented.     

Kinetics of growth and metabolism ofClostridium thermosaccharolyticum culture

The kinetics of growth and metabolism of Clostridium thermosaccharolyticum DSM 571 has been studied at varying initial pH and glucose concentration. A weak inhibitory effect of excess glucose on the specific growth rate has been shown. The effect of antibiotics of various classes on culture growth and hydrogen evolution has been studied. Streptomycin and kanamycin resistance of this culture has been revealed as well as the phenomenon of increased hydrogen production in the presence of the above antibiotics. New plasmids, pNB1 (4.9 kb) and pNB2 (2.0 kb), were isolated from C. thermosaccharolyticum DSM 571. The restriction analysis of pNB1 and pNB2 has been performed.     

Synthesis of cytotoxic cyanobactin,Wewakazole B

We report herein the synthesis of cytotoxic cyanobactin, Wewakazole B through an efficient solution-phase approach. The key steps of the synthesis are the macrocyclic lactamization of linear dodecapeptide and construction of two hexapeptides with three different substituted oxazole rings.     

Prolonged plasma clot lysis induced by acyl-derivatives of urokinase in vitro

Two acyl-derivatives of urokinase, p-trimethylam inocinnamoyl-urokinase (TMAC-Uk) and p-guanidinobenzoyl-urokinase (GB-Uk), reactivating with different rates (k _reac were 6×10^?4/s and 6×10^?5/s, respectively) were prepared. In comparison with free urokinase, acyl-activators were more stable in human plasma, and their stability increased with the decrease in the reactivation rate. Plasma clotlysis induced by all three agents was time- and dose-dependent, but acyl-activators caused a more prolonged fibrinolysis and lengthened lag-phase than free urokinase. Slowly reactivating GB-Uk induced the most long-lasting clotlysis, whereas free urokinase was more effective for the first 3 h. A combination of GB-Uk with low dose urokinase promoted the long-lasting clotlysis with the shortened lag-phase.