Relative Stability of closo‐closo,closo‐nido,and nido‐nido Macropolyhedral Boranes: The Role of Orbital Compatibility

The concept of orbital compatibility is used to explain the relative energies of different macropolyhedral structural patterns such as closo‐closo, closo‐nido, and nido‐nido. A large polyhedral borane condenses preferentially with a smaller polyhedron owing to orbital compatibility. Calculations carried out at the B3LYP/6‐31G* level show that the macropolyhedron closo(12)‐closo(6) is the most preferred structural pattern among the face‐sharing closo‐closo systems. The relative stabilities of four‐shared‐atom closo‐closo, three‐shared‐atom closo‐closo, three‐shared‐atom closo‐nido, edge‐sharing closo‐nido, and edge‐sharing nido‐nido structures are in accordance with the difference in the number of vertices of the individual polyhedra of the macropolyhedra. When the difference in the number of vertices of the individual polyhedra is large, the stability of the macropolyhedra is also large. Calculations further show that the orbital compatibility plays an important role in deciding the stability of the macropolyhedral boranes with more than two polyhedral units. The dependence of the orbital compatibility on the relative stability of the macropolyhedron varies with other factors such as inherent stability of the individual polyhedron and steric factors.     

ChemInform Abstract: Relative Stability of closo‐closo,closo‐nido,and nido‐nido Macropolyhedral Boranes: The Role of Orbital Compatibility

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Noninvasive mitochondrial imaging in live cell culture

The observed distribution of mitochondria in a cell can vary with environmental influence, degree of differentiation and disease. Differences in the distribution of mitochondrial autofluorescence may be used to distinguish these different cellular states.     

Theoretical study of the reaction of B20H16 with MeCN: closo/closo to closo/nido conversion

We propose a mechanism for the cage-opening reaction of a four atoms shared closo/closo B20H16 (1) with MeCN to a face shared closo/nido macropolyhedron B20H16(MeCN)2 (4) through a diamond-square-diamond rearrangement. Even though only one isomer of the product has been reported experimentally, our computational studies at the B3LYP/6-31G* level predict the possibility of the formation of the other isomers. Depending upon the position of the attack of the MeCN ligand on the polyhedral skeleton, different products are formed. The energetics of the reactions of B20H16 with Me2S and H2O are comparable.     

Blue shift in X-H stretching frequency of molecules due to confinement

The effect of spatial confinement on the properties of isoelectronic molecules HF, H2O, NH3, and CH4 has been studied by encapsulating them in a C60 fullerene cage. Second-order M?ller-Plesset perturbation theoretical (MP2) calculations suggest that all the guest species are stable inside the fullerene cage. This stabilization arises from the dispersion interaction between the guest and the host. It is shown that the excitation energy (Esigma*-Esigma) for the X-H bond increases and that there is a blue shift in the stretching frequencies due to confinement.     

Mechanistic insights into the hydrolysis of organophosphorus compounds by paraoxonase‐1: exploring the limits of substrate tolerance in a promiscuous enzyme

We designed, synthesized, and screened a library of analogs of the organophosphate pesticide metabolite paraoxon against a recombinant variant of human serum paraoxonase‐1. Alterations of both the aryloxy leaving group and the retained alkyl chains of paraoxon analogs resulted in substantial changes to binding and hydrolysis, as measured directly by spectrophotometric methods or in competition experiments with paraoxon. Increases or decreases in the steric bulk of the retained groups generally reduced the rate of hydrolysis, while modifications of the leaving group modulated both binding and turnover. Studies on the hydrolysis of phosphoryl azide analogs as well as amino‐modified paraoxon analogs, the former being developed as photoaffinity labels, found enhanced tolerance of structural modifications when compared with O‐alkyl‐substituted molecules. Results from computational modeling predict a predominant active site binding mode for these molecules, which is consistent with several proposed catalytic mechanisms in the literature and from which a molecular‐level explanation of the experimental trends is attempted. Overall, the results of this study suggest that while paraoxonase‐1 is a promiscuous enzyme, there are substantial constraints in the active site pocket, which may relate to both the leaving group and the retained portion of paraoxon analogs. Copyright © 2012 John Wiley & Sons, Ltd.