Exhaustive search of the configurational space of heat-shock protein 90 with its inhibitor by multicanonical molecular dynamics based dynamic docking

Multicanonical molecular dynamics based dynamic docking was used to exhaustively search the configurational space of an inhibitor binding to the N-terminal domain of heat-shock protein 90 (Hsp90). The obtained structures at 300 K cover a wide structural ensemble, with the top two clusters ranked by their free energy coinciding with the native binding site. The representative structure of the most stable cluster reproduced the experimental binding configuration, but an interesting conformational change in Hsp90 could be observed. The combined effects of solvation and ligand binding shift the equilibrium from a preferred loop-in conformation in the unbound state to an α-helical one in the bound state for the flexible lid region of Hsp90. Thus, our dynamic docking method is effective at predicting the native binding site while exhaustively sampling a wide configurational space, modulating the protein structure upon binding.     

Kinetic study on solute permeation at the interface of molecular aggregates by partial filling capillary electrophoresis

Moment analysis method using partial filling CE was developed for the kinetic study on solute permeation at the interface of spherical molecular aggregates. Moment equations for partial filling CE were developed by classifying CE systems into five categories according to the migration velocities of solute and molecular aggregate. The method was applied to the study on the dissolution of electrically neutral solutes into SDS micelles. Elution peaks were measured by partial filling CE while changing the concentration of SDS and the filling ratio of SDS micellar zone to the capillary (ϕ_M). Partition equilibrium constants (K_p) and rate constants of interfacial solute permeation of SDS micelles (k_in and k_out) were determined from the first absolute and second central moments of the elution peaks by using the moment equations. Their values were comparable irrespective of ϕ_M and were almost the same as those previously measured by complete filling CE. The positive correlation of K_p with the hydrophobicity of the solutes was explained in terms of the change in k_in and k_out. It was demonstrated that the moment analysis method using partial filling CE is effective for studying solute permeation kinetics at the interface of spherical molecular aggregates.     

Experimental study on a separate type thermosyphon

The passages of vapor flow and the returning liquid flow, are perfectly partitioned in a separate thermosyphon. Therefore the flooding limit can be eliminated, and practicability based on its construction is highly evaluated. In the present work, a container tube made of heat resisting glass, in which an electric heater is inserted, is selected as the heating section of the experimental equipment. Distilled water is used as the working fluid. The influence of the heater type, the diameter of evaporating section and the liquid fill charge on the heat transfer performance have been studied. The larger heat transfer coefficient is achieved in the case of the U type heater, the larger tube diameter and the less liquid fill charge of the evaporating section. The useful correlation equations of the heat transfer coefficient in the evaporator have been derived.

---

Experimentelle Untersuchung an einem Trennstrom-Thermosiphon

Zusammenfassung In einem Trennstrom-Thermosiphon sind die Strömungskanäle für die Dampfströmung und den Kondensatrücklauf vollkommen separiert. Die Flutgrenze kann deshalb unberücksichtigt bleiben. In dieser Untersuchung dient ein temperaturbeständiges Glasrohr mit innenliegender Heizung als Wärmequelle. Arbeitsmedium ist destilliertes Wasser. Untersucht wurden der Einfluß des Heizelementtyps, des Durchmessers der Verdampferstrecke und der Füllmenge auf das Wärmeüber-gangsverhalten. Das U-Typ Heizelement liefert bei größerem Rohrdurchmesser und geringerer Füllmenge in der Verdampferstrecke die höchsten Wärmeübergangskoeffizienten. Für diese wurden Korrelationsgleichungen aufgestellt.

     

Hausdorff measures and packing measures of limit sets of CIFSs of generalized complex continued fractions

ABSTRACT

We consider a certain family of CIFSs of the generalized complex continued fractions with a complex parameter space. We show that for each CIFS of the family, the Hausdorff measure of the limit set of the CIFS with respect to the Hausdorff dimension is zero and the packing measure of the limit set of the CIFS with respect to the Hausdorff dimension is positive (main result). This is a new phenomenon of infinite CIFSs which cannot hold in finite CIFSs. We prove the main result by showing some estimates for the unique conformal measure of each CIFS of the family and by using some geometric observations.     

Synthesis of Acid-Resistant P-Quinone Monoketals and Thermally Stable 4,4-Dialkoxycyclohexa-2,5-Dien-1-OLS

Preparation and high resistance to acid hydrolysis of sterically hindered p-quinone monoketals 1a, 1b and 1c are described. Thermal stability of ketal alcohols 2a and 2b derived from 1a and 1c, respectively, is also mentioned.     

An estimation of the column efficiency made by analyzing tailing peak profiles

It has been shown previously that most columns are not radially homogeneous but exhibit radial distributions of the mobile phase flow velocity and the local efficiency. Both distributions are best approximated by fourth-order polynomial, with the velocity in the column center being maximum for most packed columns and minimum for monolithic columns. These distributions may be an important source of tailing of elution peaks. The numerical calculation of elution peaks shows how peak tailing is related to the characteristics of these two distributions. An approach is proposed that permits estimations of the true efficiency and of the degree of column radial heterogeneity by inversing this calculation and using the tailing profiles of the elution peaks that are experimentally measured. This method was applied in two concrete cases of tailing peak profiles that had been previously reported and were analyzed by applying this new inverse approach. The results obtained prove its validity and demonstrate that this numerical method is effective for deriving the true column efficiency from experimental tailing profiles.     

Synthesis of chiral oxime ethers based on regio- and enantioselective allylic substitution catalyzed by iridium-pybox complex

The oxygen atom of oximes acts as a reactive nucleophile in the iridium-catalyzed allylic substitution of unsymmetrical substrates to give the branched oxime ethers. Among several chiral ligands evaluated, the iridium complex of pybox ligand having phenyl group catalyzed the allylic substitution of phosphates with high activity to form the branched oxime ethers with good enantioselectivities.     

Synthesis and characterization of Ti–Ni shape memory alloy thin films by pulsed laser deposition

Shape-memory alloys are crucial in various industrial fields. However, a high-quality film synthesis method has not been established yet. Here we examine optimum conditions for synthesis of thin films by pulsed laser deposition of Ti–Ni alloy target in vacuum. We investigated surface morphologies and chemical compositions of the films which were obtained under various conditions. We found that the suitable Ti/Ni ratio was obtained by adjusting the distance between the target and the substrate in vacuum. In parallel, we analyzed plasma plume by optical emission spectroscopy and time-of-flight mass spectrometry. We discuss the basic behavior of ablated particles in vacuum.     

Preparation of poly(p‐oxybenzoyl) crystals using direct polymerization of p‐hydroxybenzoic acid in the presence of boronic anhydrides

Poly(p‐oxybenzoyl) (POB) crystals were prepared by reaction‐induced crystallization during direct polymerization of p‐hydroxybenzoic acid in the presence of boronic anhydrides. Polymerizations were carried out at 300 °C in dibenzyltoluene at a concentration of 1% with three kinds of anhydrides of boronic acid such as 3,4,5‐trifluorophenylboronic acid (TFB), 4‐methoxyphenylboronic acid (MPB) and 4‐biphenylboronic acid (BPB). The POB crystals were formed as precipitates in the solution and the morphology was considerably influenced by both the structure of the boronic anhydride and its concentration (c_B). Needle‐like crystals were firmed in the presence of TFB anhydride (TFBA) at c_Bs of 5 and 10 mol % by the spiral growth of lamellae. Spherical aggregates of slab‐like crystals were formed at c_Bs from 50 to 100 mol %. The polymerization with MPB anhydride and BPB anhydride (BPBA) also yielded the needle‐like crystals at c_Bs of 50 and 5 mol %, respectively. The polymerization with TFBA at lower c_B was favorable to prepare the needle‐like crystal. Molecular weight was also influenced by the structure of the boronic anhydride and c_B. M_n increased generally with c_B and BPBA gave the highest M_n of 14.7 × 10³ at c_B of 100 mol %. The loose packing of the molecules in the crystal caused by the bulkiness of the end‐groups made the polymerization in the crystals more efficiently. Morphology and molecular weight of the POB crystals could be controlled by the chemical structure and the content of boronic anhydride. © 2010 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem, 2011.