Sequestration within biomolecular condensates inhibits Aβ-42 amyloid formation

Biomolecular condensates are emerging as an efficient strategy developed by cells to control biochemical reactions in space and time by locally modifying composition and environment. Yet, local increase in protein concentration within these compartments could promote aberrant aggregation events, including the nucleation and growth of amyloid fibrils. Understanding protein stability within the crowded and heterogeneous environment of biological condensates is therefore crucial, not only when the aggregation-prone protein is the scaffold element of the condensates but also when proteins are recruited as client molecules within the compartments. Here, we investigate the partitioning and aggregation kinetics of the amyloidogenic peptide Abeta42 (Aβ-42), the peptide strongly associated with Alzheimer''s disease, recruited into condensates based on low complexity domains (LCDs) derived from the DEAD-box proteins Laf1, Dbp1 and Ddx4, which are associated with biological membraneless organelles. We show that interactions between Aβ-42 and the scaffold proteins promote sequestration and local increase of the peptide concentration within the condensates. Yet, heterotypic interactions within the condensates inhibit the formation of amyloid fibrils. These results demonstrate that biomolecular condensates could sequester aggregation-prone proteins and prevent aberrant aggregation events, despite the local increase in their concentration. Biomolecular condensates could therefore work not only as hot-spots of protein aggregation but also as protective reservoirs, since the heterogenous composition of the condensates could prevent the formation of ordered fibrillar aggregates.

Biomolecular condensates sequester an aggregation-prone peptide and prevent its aggregation, showing that heterotypic interactions within the condensates can prevent the formation of amyloid fibrils, despite the local increase in concentration.     

Aromatic substitution in the complexes formed upon addition of gaseous arenium ions to proelectrophiles. A FT-ICR study

Experiments based on FT-ICR mass spectrometry provide conclusive evidence for the operation of an alternative mechanism of electrophilic aromatic substitution occurring within the complex formed upon addition of gaseous arenium ions to a variety of proelectrophiles, including alkyl halides, alcohols, epoxides, esters and diazoalkanes. The factors affecting the efficiency of the unconventional substitution are examined in the light of the kinetic results of the FT-ICR experiments.     

Minimum blocking configurations

Some results on configurations realizing minimum blocking sets of a finite projective plane are obtained by introducing a suitable attraction property.Dedicated to Professor M. Scafati Tallini on the occasion of her 65th birthday     

The magnetic behaviour of [NnBu4]4[Ni16Pd16(CO)40]: an even-electron homoleptic carbonyl-metal cluster anion displaying a J = 2 ground state

The magnetic behaviour of the even-electron [Ni16Pd16(CO)40]4- cluster, in its [NnBu4]+ salt, has been investigated by magnetometry and muon spin rotation/relaxation (muSR) spectroscopy. The susceptibility measurements show an exceptionally high magnetic moment corresponding to a total spin value J=2. This suggests a Hund filling of a quadruplet ground state, quite unique in carbonyl-metal clusters. SQUID magnetometry shows a departure from the Curie-Weiss law, for T>150 K, and strong deviation from a Brillouin behaviour of the magnetisation curves. muSR spectroscopy in zero applied field shows a temperature independent decay of the muon spin polarisation, similar to that of a purely paramagnetic system. The observed muon spin repolarisation in a moderate external longitudinal field, however, invalidates this simple picture and suggests the presence of a local anisotropy field acting on the cluster's magnetic moment. A consistent interpretation of magnetometry and muSR results implies the occurrence of an additional interaction of the cluster spin with an effective crystalline field. The inclusion of this interaction in a model Hamiltonian allows us to successfully reproduce both the susceptibility and magnetisation data.     

Densities and excess molar volumes for binary mixtures of N,N-dimethylformamide+ 1,2-dimethoxyethane

Densities are reported for N,N-dimethylformamide and 1,2-dimethoxyethane binary mixtures at different mole fractions covering the whole miscibility range and at 19 temperatures ranging from –10 to 80°C. The experimental density data have been fitted by empirical relations and the excess volumes by a Redlich-Kister equation. The 11 N,N-dimethylformamide and 1,2-dimethoxyethane adduct appears to be stable throughout the temperature range. A comparison with other DMF containing mixtures is made.     

Reaction products between sodium diphenyl -amine-4-sulfonate and hydrated LaCl3

This paper presents the reactions of synthesis between the ligand sodium diphenylamine-4-sulfonate and the lanthanum(III) chloride hydrated. The compounds (LaCl₃)₂·(C₁₂H₁₀NSO₃Na)₃·2(CH₃CH₂OH) (A) and (LaCl₃)·(C₁₂H₁₀NSO₃Na)·(CH₃CH₂OH)·12H₂O (B) were obtained using the solvents ethanol and methanol (synthesis A) and ethanol and water (synthesis B). The produced compounds and the ligand were characterized by thermogravimetric and differential thermogravimetric analysis, IR spectroscopy and elemental analysis of sodium, carbon, hydrogen, nitrogen, sulfur, chlorine and lanthanum, whereas the residues from thermal decomposition were investigated by X-ray diffractometry. This revised version was published online in August 2006 with corrections to the Cover Date.     

Navier–Stokes simulations in gappy PIV data

Velocity measurements conducted with particle image velocimetry (PIV) often exhibit regions where the flow motion cannot be evaluated. The principal reasons for this are the absence of seeding particles or limited optical access for illumination or imaging. Additional causes can be laser light reflections and unwanted out-of-focus effects. As a consequence, the velocity field measured with PIV contains regions where no velocity information is available, that is gaps. This work investigates the suitability of using the unsteady incompressible Navier–Stokes equations to obtain accurate estimates of the local transient velocity field in small gaps; the present approach applies to time-resolved two-dimensional experiments of incompressible flows. The numerics are based on a finite volume discretization with partitioned time-stepping to solve the governing equations. The measured velocity distribution at the gap boundary is taken as time-varying boundary condition, and an approximate initial condition inside the gap is obtained via low-order spatial interpolation of the velocity at the boundaries. The influence of this I.C. is seen to diminish over time, as information is convected through the gap. Due to the form of the equations, no initial or boundary conditions on the pressure are required. The approach is evaluated by a time-resolved experiment where the true solution is known a priori. The results are compared with a boundary interpolation approach. Finally, an application of the technique to an experiment with a gap of complex shape is presented.     

H/D Exchange Processes in Flavonoids: Kinetics and Mechanistic Investigations

Several classes of flavonoids, such as anthocyanins, flavonols, flavanols, and flavones, undergo a slow H/D exchange on aromatic ring A, leading to full deuteration at positions C(6) and C(8). Within the flavanol class, H-C(6) and H-C(8) of catechin and epicatechin are slowly exchanged in D₂O to the corresponding deuterated analogues. Even quercetin, a relevant flavonol representative, shows the same behaviour in a D₂O/DMSOd₆ 1:1 solution. Detailed kinetic measurements of these H/D exchange processes are here reported by exploiting the time-dependent changes of their peak areas in the ¹H-NMR spectra taken at different temperatures. A unifying reaction mechanism is also proposed based on our detailed kinetic observations, even taking into account pH and solvent effects. Molecular modelling and QM calculations were also carried out to shed more light on several molecular details of the proposed mechanism.