Nucleic acid analysis using an expanded genetic alphabet to quench fluorescence

Organic chemistry has made possible the synthesis of molecules that expand on Nature's genetic alphabet. Using the previously described nonstandard DNA base pair constructed from isoguanine and 5-methylisocytosine, we report a highly specific and sensitive method that allows for the fast and specific quantitation of genetic sequences in a closed tube format. During PCR amplification, enzymatic site-specific incorporation of a quencher covalently linked to isoguanine allows for the simultaneous detection and identification of multiple targets. The specificity of method is then established by analysis of thermal denaturation or melting of the amplicons. The appropriate functions of all reactions are further verified by incorporation of an independent target into the reaction mixture. We report that the method is sensitive down to the single copy level, and specificity is demonstrated by multiplexed end-point genotypic analysis of four targets simultaneously using four separate fluorescent reporters. The method is general enough for quantitative and qualitative analysis of both RNA and DNA using previously developed primer sets. Though the method described employs the commonly used PCR, the enzymatic incorporation of reporter groups into DNA site-specifically should find broad utility throughout molecular biology.     

In situ tissue pathology from spatially encoded mass spectrometry classifiers visualized in real time through augmented reality

Integration between a hand-held mass spectrometry desorption probe based on picosecond infrared laser technology (PIRL-MS) and an optical surgical tracking system demonstrates in situ tissue pathology from point-sampled mass spectrometry data. Spatially encoded pathology classifications are displayed at the site of laser sampling as color-coded pixels in an augmented reality video feed of the surgical field of view. This is enabled by two-way communication between surgical navigation and mass spectrometry data analysis platforms through a custom-built interface. Performance of the system was evaluated using murine models of human cancers sampled in situ in the presence of body fluids with a technical pixel error of 1.0 ± 0.2 mm, suggesting a 84% or 92% (excluding one outlier) cancer type classification rate across different molecular models that distinguish cell-lines of each class of breast, brain, head and neck murine models. Further, through end-point immunohistochemical staining for DNA damage, cell death and neuronal viability, spatially encoded PIRL-MS sampling is shown to produce classifiable mass spectral data from living murine brain tissue, with levels of neuronal damage that are comparable to those induced by a surgical scalpel. This highlights the potential of spatially encoded PIRL-MS analysis for in vivo use during neurosurgical applications of cancer type determination or point-sampling in vivo tissue during tumor bed examination to assess cancer removal. The interface developed herein for the analysis and the display of spatially encoded PIRL-MS data can be adapted to other hand-held mass spectrometry analysis probes currently available.

Integration between a hand-held mass spectrometry desorption probe based on picosecond infrared laser technology (PIRL-MS) and an optical surgical tracking system demonstrates in situ tissue pathology from point-sampled mass spectrometry data.     

Hydrogen production by steam reforming of glycerol over Ni/Ce/Cu hydroxyapatite-supported catalysts

Hydroxyapatite-supported Ni-Ce-Cu catalysts were synthesised and tested to study their potential for use in the steam reforming of glycerol to produce hydrogen. The catalysts were prepared by the deposition-precipitation method with variable nickel, cerium, and copper loadings. The performance of the catalysts was evaluated in terms of hydrogen yield at 600°C in a tubular fixed-bed microreactor. All catalysts were characterised by the BET surface area, XRD, TPR, TEM, and FE-SEM techniques. The reaction time was 240 min in a fixed-bed reactor at 600°C and atmospheric pressure with a water-to-glycerol feed molar ratio of 8: 1. It was found that the Ni-Ce-Cu (3 mass %-7.5 mass %-7.5 mass %) hydroxyapatite-supported catalyst afforded the highest hydrogen yield (57.5 %), with a glycerol conversion rate of 97.3 %. The results indicate that Ni/Ce/Cu/hydroxyapatite has great potential as a catalyst for hydrogen production by steam reforming of glycerol.     

X-ray diffraction studies on crystallite size evolution of CoFe2O4 nanoparticles prepared using mechanical alloying and sintering

Nanosized cobalt ferrite spinel particles have been prepared by using mechanically alloyed nanoparticles. The effects of various preparation parameters on the crystallite size of cobalt ferrite which includes milling time; ball-to powder weight ratio (BPR) and sintering temperature, were studied using X-ray diffractometer (XRD). Scherrer's equation was used to study the crystallite size evolution of the as-prepared materials. The results of the as-milled sample revealed that both milling time and BPR plays a role in determining the crystallite size of the milled powder. However, where sintering is involved, the sintering temperature results in grain growth, and thus plays a dominant role in determining the final crystallite size of the samples sintered at higher temperature (above 900 °C). From the vibrating-sample magnetometer (VSM) measurement it was observed that the coercivity of the as-milled samples without sintering is almost negligible, which is a type characteristic of superparamagnetic material. However, for the sintered samples, the saturation increases while coercivity decreases with increases sintering temperature.     

Dynamical pattern formation for diblock copolymer films under stretch by moving walls

We propose a computational method that takes into account the dynamical influence of moving rigid walls over the pattern formation for thin films of diblock copolymers. The competition between the surface field energy and elastic stretching energy, and the effects of the molecular relaxation on pattern formation are studied. Finally, it is also observed that stretching the film enhances the ordering of patterns in it.     

Gain and noise figure improvements in a shorter wavelength region of EDFA using a macrobending approach

Gain and noise figure improvements are demonstrated in a shorter wavelength region of a double-pass EDFA using a macrobending approach. The EDF is wound in a small radius to suppress the amplified spontaneous emission at the longer wavelength in order to achieve a high amplification in the shorter wavelength. Gain enhancements of about 12–14 dB are obtained with macrobending at the wavelength region between 1480 and 1530 nm. The macrobending also reduces the noise figure of the EDFA at wavelengths shorter than 1525 nm with a maximum improvement of 25 dB.     

A review on <Superscript>90</Superscript>Y-labeled compounds and biomolecules

The field of therapeutic nuclear medicine is emerging rapidly as choice of treatment in oncology and other cellular malignancies. The growth of this branch of nuclear medicine is greatly facilitated by the introduction of a number of new radiopharmaceuticals and radionuclides. ⁹⁰Y-radiopharmaceuticals have confirmed their worth in medical and clinical areas in a very short span of time. The ⁹⁰Y is a radioisotope widely used for therapeutic purposes and considerable perfection has been made to understand the chemistry of ⁹⁰Y-labeled radiopharmaceuticals. The development of these radiopharmaceuticals can be made favorable by using appropriate buffer, incubation period, optimal pH, specific activity and reaction temperature. In this review, we have discussed the preparation of range of ⁹⁰Y transporting biological molecules such as antibodies radiolabeled peptides, antigens and microsphere with their clinical applications.     

Thermal analysis of CsH<Subscript>2</Subscript>PO<Subscript>4</Subscript> nanoparticles using surfactants CTAB and F-68

A study concerned to thermogravimetric analysis is performed in cesium dihydrogen phosphate (CsH₂PO₄) that was synthesized, using cetyltrimethylammonium-bromide (CTAB), polyoxyethylene-polyoxypropylene (F-68) and mixture of (F-68:CTAB) with two mole ratio 0.06 and 0.12 as surfactant. The dehydration behavior of particles was studied using thermal gravimetric analysis and differential scanning calorimetric. Subsequently, the experimental results indicated that the first dehydration temperature in the range of 237–239 °C upon heating, the second peaks occur at temperature range 290–295 °C and overlapping in the thermogravimetric events is observed. The mass loss values are obtained in the range of 6.62–6.97 wt% that is less than reported theoretical value 7.8 wt%. These values show well compatibility of reaction CsH₂PO₄ to Cs₂H₂P₂O₇ with 3.92 wt% whereas mass loss value of CsH₂PO₄ to CsPO₃ is less than theoretical value 7.8 wt%. The activation energy of two steps dehydration are calculated using Kissinger equation for the samples synthesized via CTAB and (F-68) with minimum value mass loss 6.62% and maximum value mass loss 6.97%, respectively. The calculation results reveal that the reaction rate in the first step (CsH₂PO₄ → Cs₂H₂P₂O₇) is faster than the second step (CsH₂PO₄ → CsPO₃). The weight loss values of the samples demonstrate that existence of CTAB can be considered as effective factor which prevents more weight loss during the dehydration process.