Computational study on the interactions of mustard gas with cucurbituril macrocycles

The study on the absorption of toxic gases such as mustard gas by organic host is essential to the development of inexpensive detection and decontamination equipments. Using quantum chemical methods, we propose cucurbituril as an effective host to capture mustard gas. It was found that stable complexes are formed with the inclusion of the toxic gas molecules inside the cucurbituril cavity, compared with the lateral and exterior interactions. Oxygen mustard has a comparable binding energy with sulfur mustard and hence can be used during experimental investigation. Additionally, during the inclusion complex formation, the presence of heteroatoms helps the guest molecules to undergo a larger structural reorganization to get accommodated inside the cucurbituril macromolecule. Atoms‐in‐molecules analysis shows the existence of strong intermolecular CH…O bonding between the guest molecules and cucurbituril macromolecule. The presence of an intramolecular CH…Cl type of bonding accounts for the higher stabilization of sulfur mustard inside the cucurbituril macromolecule. © 2015 Wiley Periodicals, Inc.     

Using positron 2D-ACAR as a probe of point defects in GaAs: The As vacancy as a case study

Two-Dimensional Angular Correlation of positron Annihilation Radiation (2D-ACAR) experiments have been performed on n-type GaAs. By combining these results with those from positron lifetime experiments, the momentum distribution of the arsenic vacancy in its neutral (V _aAs ⁰ ) and negative (V _As ^– ) charge states have been extracted. These distributions were all normalized to the respective positron lifetime that characterizes them. The first thing to be noticed is that the momentum distributions of the vacancies, as seen by the positron, are fairly isotropic and structureless. The distribution forV _As ⁰ is more peaked than that ofV _As ^– while the latter is more intense in the large momentum regions of the spectra. From this, it can be inferred that VA. has a smaller open volume thanV _As ⁰ A closer look at the momentum distribution of the vacancies reveals that they are not entirely isotropic, but, in fact, have a bulk-like component. Finally, the experimental results for bulk GaAs andV _As ^– compare well in a qualitative manner with the momentum distributions that result from an ab-initio molecular dynamics calculation.     

Growth and physical properties of an organic crystal for NLO applications: Guanidinium phenyl arsonate (GPA)

Single crystals of organic material guanidinium phenyl arsonate (GPA) of size 28 × 14 × 10 mm³ were grown from propanol–water mixed solvent by slow solvent evaporation technique. The crystal belongs to monoclinic system with noncentrosymmetric space group Cc. The lattice parameter values of GPA crystals are a = 18.453 Å, b = 7.609 Å, c = 12.592 Å and β = 121.856°. The grown crystal was subjected to X-ray diffraction (XRD) study to identify its morphology and structure. Chemical etching study using propanol–water as etchant reveals the mechanism of growth. The formation of synthesized compound was confirmed by Fourier transform infrared (FT-IR) spectroscopy analysis. Optical transmittance and second harmonic generation (SHG) of the grown crystals were studied by UV–vis–NIR spectrum and Kurtz powder technique respectively. The transmittance of GPA has been used to calculate the refractive index ‘n’ and the extinction coefficient ‘k’. The laser induced surface damage threshold for the grown crystal was determined using Nd:YAG laser. The mechanical behavior of GPA was analyzed using Vickers microhardness test.     

A combined experimental and theoretical investigation on the oxygenation of organic sulfides by oxo(salen)chromium(V) ion

The mechanism of oxygenation of organic sulfide by oxo(salen)chromium(V) complexes has been studied experimentally and by the density functional theory (DFT) method. Spectral studies show DMSO ligands bind with the Cr center of oxidant and the adduct formed was responsible for the oxygenation reaction. The reaction was first order with respect to oxidant and substrate. Hammett plot shows the formation of positive charge over sulfur atom and the development of negative charge over the oxidant in the transition state (TS). For the substrate ρ values are in the range from ?1.5 to ?1.8. The geometry has been correctly predicted by the B3LYP function, and it gives better results for spin states, harmonic frequencies, and thermodynamic energies for the system. DFT results indicate the existence of oxo(salen)chromium(V) and Cr(III)–salen at doublet and quartet as ground state, respectively. Binding of donor ligand weakens the Cr? O bond. TS structures show an increase in the negative charge and spin density over Cr atom indicating the involvement of spin inversion and radical character. The low activation energy and high free energy change are responsible for the enhancement of the reaction rate and product yield in the presence of DMSO donor ligand, while the rebound mechanism and the direction of substrate approach perpendicular to the salen plane are responsible for their higher selectivity. From this combined study, a mechanism involving consecutive two‐electron transfer from the oxo(salen)chromium(V) ion to the electron‐rich sulfur atom is proposed. Copyright © 2008 John Wiley & Sons, Ltd.     

A theoretical study of the effects of transition metal dopants on the adsorption and dissociation of hydrogen on nickel clusters

The structure, stability, adsorption, and dissociation of H₂ on nickel clusters doped with late transition metals were investigated using density functional theory with the BP86 functional. Molecular hydrogen physisorption occurred at a vertex atom with a low coordination number. Charge transfer between clusters and the H₂ molecule stabilized the physisorption. The chemisorption of H₂ occurred at the bridge sites, without any structural or spin change of the clusters. Among the pentamer clusters, Cd, Zn, and Au had the lowest chemisorption energies, while Ir and Pt had higher chemisorption energies for hydrogen. The computed reaction energies and activation barriers for the dissociation mechanism showed that dopants such as Rh, Pd, Pt, and Au have endothermic reaction energies and low activation barriers. This facilitates the reversible adsorption/dissociation of the H₂ molecule on these metal‐doped clusters. The dopant atoms play a major role in modulating the physisorption, chemisorption, and dissociation mechanism of H₂ on nickel clusters. © 2013 Wiley Periodicals, Inc.     

Nucleation kinetics,growth and characterization of guanidinium 3-nitrobenzoate single crystal

A potential organic nonlinear optical guanidinium 3-nitrobenzoate (Gu-3NB) was synthesized. Solubility of Gu-3NB was determined for various temperatures. Meta stable zone width and induction period values were determined in order to optimize the growth parameters. Nucleation parameters, such as interfacial tension, critical radius and free energy of formation of critical nucleus were evaluated. Optically good quality, bulk single crystal of Gu-3NB was successfully grown by slow evaporation method and slow cooling method with the optimized growth parameters. The etching study was performed to ascertain the growth quality of the crystal. The unit cell parameters and the morphology of Gu-3NB single crystal were determined by X-ray diffraction. The grown crystal was subjected to various characterization studies, such as optical, dielectric measurement and mechanical studies.     

Synthesis of chalcones with anticancer activities

Several chalcones were synthesized and their in vitro cytotoxicity against various human cell lines, including human breast adenocarcinoma cell line MCF-7, human lung adenocarcinoma cell line A549, human prostate cancer cell line PC3, human adenocarcinoma cell line HT-29 (colorectal cancer) and human normal liver cell line WRL-68 was evaluated. Most of the compounds being active cytotoxic agents, four of them with minimal IC?? values were chosen and studied in detail with MCF-7 cells. The compounds 1, 5, 23, and 25 were capable in eliciting apoptosis in MCF-7 cells as shown by multiparameter cytotoxicity assay and caspase-3/7, -8, and -9 activities (p < 0.05). The ROS level showed 1.3-fold increase (p < 0.05) at the low concentrations used and thus it was concluded that the compounds increased the ROS level eventually leading to apoptosis in MCF-7 cells through intrinsic as well as extrinsic pathways.