Thiazole orange-peptide conjugates: sensitivity of DNA binding to chemical structure

[structure: see text] Derivatives of the highly fluorescent and DNA-binding dye thiazole orange (TO) are described that feature appended peptides. Functionalization of TO can be achieved at either of the endocyclic nitrogens, and the photophysical properties and DNA-binding modes are sensitive to the position of the tethered peptide. A series of TO-peptide conjugates are described, demonstrating the utility of a solid-phase synthesis approach to their preparation and illustrating how the photophysical and DNA-binding properties of the compounds are influenced by chemical structure.     

Selective cleavage of P-N bonds and the conversion of rhodium N-pyrrolyl phosphine complexes into diphosphoxane-bridged dimers

Rhodium(I) complexes trans-[RhCl(CO)(PR(2)[NC(4)H(3)C(O)Me-2])(2)] (R = Ph, NC(4)H(4)) react with water to give the diphosphoxane-bridged dimers [Rh(2)Cl(2)(CO)(2)(mu-PR(2)OPR(2))(2)] following cleavage of the P-N bonds to the 2-acetyl-N-pyrrolyl groups. The two dimers have been crystallographically characterized and show a number of structural differences, with the PPh(2)OPPh(2) compound possessing semibridging chloride and carbonyl ligands whereas the P(NC(4)H(4))(2)OP(NC(4)H(4))(2) compound contains only terminal chlorides and carbonyls. No evidence for cleavage of the P-N bonds involving the unfunctionalized N-pyrrolyl groups in trans-[RhCl(CO)(P[NC(4)H(4)](2)[NC(4)H(3)C(O)Me-2])(2)] was observed.     

A proteomic analysis of organelles from Arabidopsis thaliana

We introduce the use of Arabidopsis thaliana callus culture as a system for proteomic analysis of plant organelles using liquid-grown callus. This callus is relatively homogeneous, reproducible and cytoplasmically rich, and provides organelles in sufficient quantities for proteomic studies. A database was generated of mitochondrial, endoplasmic reticulum (ER), Golgi/prevacuolar compartment and plasma membrane (PM) markers using two-dimensional sodium dodecyl sulphate-polyacrylamide gel electrophoresis (2-D SDS-PAGE) and peptide sequencing or mass spectrometric methods. The major callus membrane-associated proteins were characterised as being integral or peripheral by Triton X-114 phase partitioning. The database was used to define specific proteins at the Arabidopsis callus plasma membrane. This database of organelle proteins provides the basis for future characterisation of the expression and localisation of novel plant proteins.     

Synthesis and structural characterization of tin(II) and zinc(II) derivatives of cyclic alpha-hydroxyketones, including the structures of Sn(maltol)(2), Sn(tropolone)(2), Zn(tropolone)(2), and Zn(hinokitiol)(2)

Zinc(II) and tin(II) derivatives of maltol (Hmalt), ethylmaltol (HEtmalt), tropolone (Htrop), hinokitiol (Hhino), and kojic acid (Hkoj) have been prepared and characterized, and the crystal structures of M(trop)(2) (M = Zn, Sn), Zn(hino)(2).EtOH, and Sn(malt)(2) have been determined. The Zn(trop)(2) is a polymeric structure in which tropolone has both a bridging and chelating role; zinc(hino)(2) crystallizes as an ethanol adduct of which the structure is a dimeric fragment of the Zn(trop)(2) polymer and in which each metal is "capped" by a molecule of alcohol. The tin complexes are notably air-stable despite adopting monomeric pseudo-trigonal-bipyramidal structures (SnO(4)E; E is a stereochemically active lone electron pair) in which the ligands only chelate a single metal center.     

Substitution reactions of [Ru(dppe)(CO)(H(2)O)(3)][OTf](2)

The labile nature of the coordinated water ligands in the organometallic aqua complex [Ru(dppe)(CO)(H(2)O)(3)][OTf](2) (1) (dppe = Ph(2)PCH(2)CH(2)PPh(2); OTf = OSO(2)CF(3)) has been investigated through substitution reactions with a range of incoming ligands. Dissolution of 1 in acetonitrile or dimethyl sulfoxide results in the facile displacement of all three waters to give [Ru(dppe)(CO)(CH(3)CN)(3)][OTf](2) (2) and [Ru(dppe)(CO)(DMSO)(3)][OTf](2) (3), respectively. Similarly, 1 reacts with Me(3)CNC to afford [Ru(dppe)(CO)(CNCMe(3))(3)][OTf](2) (4). Addition of 1 equiv of 2,2'-bipyridyl (bpy) or 4,4'-dimethyl-2,2'-bipyridyl (Me(2)bpy) to acetone/water solutions of 1 initially yields [Ru(dppe)(CO)(H(2)O)(bpy)][OTf](2) (5a) and [Ru(dppe)(CO)(H(2)O)(Me(2)bpy)][OTf](2) (6a), in which the coordinated water lies trans to CO. Compounds 5a and 6a rapidly rearrange to isomeric species (5b, 6b) in which the ligated water is trans to dppe. Further reactivity has been demonstrated for 6b, which, upon dissolution in CDCl(3), loses water and coordinates a triflate anion to afford [Ru(dppe)(CO)(OTf)(Me(2)bpy)][OTf] (7). Reaction of 1 with CH(3)CH(2)CH(2)SH gives the dinuclear bridging thiolate complex [[(dppe)Ru(CO)](2)(mu-SCH(2)CH(2)CH(3))(3)][OTf] (8). The reaction of 1 with CO in acetone/water is slow and yields the cationic hydride complex [Ru(dppe)(CO)(3)H][OTf] (9) via a water gas shift reaction. Moreover, the same mechanism can also be used to account for the previously reported synthesis of 1 upon reaction of Ru(dppe)(CO)(2)(OTf)(2) with water (Organometallics 1999, 18, 4068).     

Dihydrogen complexes of rhodium: [RhH2(H2)x (PR3)2]+ (R = Cy, iPr; x = 1, 2)

Addition of H2 (4 atm at 298 K) to [Rh(nbd)(PR3)2][BAr(F)4] [R = Cy, iPr] affords Rh(III) dihydride/dihydrogen complexes. For R = Cy, complex 1a results, which has been shown by low-temperature NMR experiments to be the bis-dihydrogen/bis-hydride complex [Rh(H)2(eta2-H2)2(PCy3)2][BAr(F)4]. An X-ray diffraction study on 1a confirmed the {Rh(PCy3)2} core structure, but due to a poor data set, the hydrogen ligands were not located. DFT calculations at the B3LYP/DZVP level support the formulation as a Rh(III) dihydride/dihydrogen complex with cis hydride ligands. For R = iPr, the equivalent species, [Rh(H)2(eta2-H2)2(P iPr3)2][BAr(F)4] 2a, is formed, along with another complex that was spectroscopically identified as the mono-dihydrogen, bis-hydride solvent complex [Rh(H)2(eta2-H2)(CD2Cl2)(P iPr3)2][BAr(F)4] 2b. The analogous complex with PCy3 ligands, [Rh(H)2(eta2-H2)(CD2Cl2)(PCy3)2][BAr(F)4] 1b, can be observed by reducing the H2 pressure to 2 atm (at 298 K). Under vacuum, the dihydrogen ligands are lost in these complexes to form the spectroscopically characterized species, tentatively identified as the bis hydrides [Rh(H)2(L)2(PR3)2][BAr(F)4] (1c R = Cy; 2c R = iPr; L = CD2Cl2 or agostic interaction). Exposure of 1c or 2c to a H2 atmosphere regenerates the dihydrogen/bis-hydride complexes, while adding acetonitrile affords the bis-hydride MeCN adduct complexes [Rh(H)2(NCMe)2(PR3)2][BAr(F)4]. The dihydrogen complexes lose [HPR3][BAr(F)4] at or just above ambient temperature, suggested to be by heterolytic splitting of coordinated H2, to ultimately afford the dicationic cluster compounds of the type [Rh6(PR3)6(mu-H)12][BAr(F)4]2 in moderate yield.     

1,2,4,5‐Tetrazines vs. Carboxylic Acid Dimers: Molecular Chemistry vs. Supramolecular Chemistry

The structures of six new tetrazines have been determined and their molecular packing has been compared to the supermolecular architecture observed in related carboxylic acid dimers. In the tetrazines, covalent N? N bonds are considered to replace the intermolecular O? H???O hydrogen bonds of the carboxylic acids. In the systems investigated, it is apparent that, in the majority of cases, the covalent six‐membered ring of the tetrazine is an appropriate replacement for the carboxylic acid synthon. This apparent interplay between molecular and supramolecular units may have applications in the crystal engineering of new materials.