Chemical reaction dynamics of PeCB and TCDD decomposition: A tight‐binding quantum chemical molecular dynamics study with first‐principles parameterization

The decomposition reaction dynamics of 2,3,4,4′,5‐penta‐chlorinated biphenyl (2,3,4,4′,5‐PeCB), 3,3′,4,4′,5‐penta‐chlorinated biphenyl (3,3′,4,4′,5‐PeCB), and 2,3,7,8‐tetra‐chlorinated dibenzo‐p‐dioxin (2,3,7,8‐TCDD) was clarified for the first time at atomic and electronic levels, using our novel tight‐binding quantum chemical molecular dynamics method with first‐principles parameterization. The calculation speed of our new method is over 5000 times faster than that of the conventional first‐principles molecular dynamics method. We confirmed that the structure, energy, and electronic states of the above molecules calculated by our new method are quantitatively consistent with those by first‐principles calculations. After the confirmation of our methodology, we investigated the decomposition reaction dynamics of the above molecules and the calculated dynamic behaviors indicate that the oxidation of the 2,3,4,4′,5‐PeCB, 3,3′,4,4′,5‐PeCB, and 2,3,7,8‐TCDD proceeds through an epoxide intermediate, which is in good agreement with the previous experimental reports and consistent with our static density functional theory calculations. These results proved that our new tight‐binding quantum chemical molecular dynamics method with first‐principles parameterization is an effective tool to clarify the chemical reaction dynamics at reaction temperatures. © 2004 Wiley Periodicals, Inc. Int J Quantum Chem, 2005     

Lanthanum(III) Nitrate Hexahydrate: A Versatile Reagent for the Synthesis of Bis(indolyl) Methanes under Solvent‐Free Conditions

A mild and efficient synthesis of bis(indolyl) methanes by the reaction of indoles with various aldehydes at room temperature in the presence of a catalytic amount of a La(NO₃)₃ · 6H₂O afforded the corresponding bis(indolyl) methanes in excellent yields under solvent‐free conditions.     

Electrochemical characterization of copper chemical mechanical polishing in l-glutamic acid–hydrogen peroxide-based slurries

The effect of l-glutamic acid as complexing agent in the presence of hydrogen peroxide as oxidizer in copper chemical mechanical polishing (CMP) slurry is investigated. In the CMP process, the work surface is moved against a pad, with slurry flowing between the surface and the pad. The polish rate was found to be stable over a wide range of hydrogen peroxide concentration. High concentration of either l-glutamic acid or hydrogen peroxide leads to a reduction in polish rate, but a high concentration of both chemicals does not reduce the polish rate. In the absence of hydrogen peroxide, the Cu polish rate was 0 for all the l-glutamic acid concentrations investigated. However, potentiodynamic polarization curves do not show any sign of passivation when l-glutamic acid was present in the solution. In situ open circuit potential measurements show that copper redox reactions as well as hydrogen peroxide redox reactions contribute in determining the electrochemical behavior. We propose that l-glutamic acid inhibits the copper dissolution by adsorption onto the metallic copper, but enhances copper dissolution by complexing copper ions. The results show that it is possible to conduct controllable copper CMP in mildly acidic slurries with hydrogen peroxide as oxidizer and l-glutamic acid as complexing agent.     

The valence state of M-ions in the chemically stabilized YSr2Cu3-xMxO7+δ (M=Mo, W and Re) superconductors

 Single phase Ba-free Sr-based YSr₂Cu _3-x M _x O_7+δ (M=Mo, W and Re) compounds have been stabilized by chemical doping. Superconductivity is observed for these phases in the range 30–45 K. X-ray diffraction studies suggest a relatively small orthorhombicity compared to Ba-analogue. X-ray photoelectron spectroscopic investigations reveal that the stabilizing cations are in the hexavalent state. The observation of the higher oxidation state of M-ions accounts for the excess oxygen content in these phases which is in accordence with the diffraction results. Received: 10 June 1996 / Accepted: 20 September 1996     

Dissecting Cooperative Communications in a Protein with a High‐Throughput Single‐Molecule Scalpel

Miscued communication often leads to misfolding and aggregation of the proteins involved in many diseases. Owing to the ensemble average property of conventional techniques, detailed communication diagrams are difficult to obtain. Mechanical unfolding affords an unprecedented perspective on cooperative transitions by observing a protein along a trajectory defined by two mutated cysteine residues. Nevertheless, this approach requires tedious sample preparation at the risk of altering native protein conformations. To address these issues, we applied click chemistry to tether a protein to the two dsDNA handles through primary amines in lysine residues as well as at the N terminus. As a proof of concept, we used laser tweezers to mechanically unfold and refold calmodulin along 36 trajectories, maximally allowed by this strategy in a single batch of protein preparation. Without a priori knowledge of the particular residues to which the double‐stranded DNA handles attach, we used hierarchical cluster analysis to identify 20 major trajectories, according to the size and the pattern of unfolding transitions. We dissected the cooperativity into all‐or‐none and partially cooperative events, which represent strong and weak high‐order interactions in proteins, respectively. Although the overall cooperativity is higher within the N or C lobe than that between the lobes, the all‐or‐none cooperativity is anisotropic among different the unfolding trajectories and becomes relatively more predominant when the size of the protein segments increases. The average cooperativity for all‐or‐none transitions falls within the expected range observed by ensemble techniques, which supports the hypothesis that unfolding of a free protein can be reconstituted from individual trajectories.     

Methylation of zebularine investigated using density functional theory calculations

Deoxyribonucleic acid (DNA) methylation is an epigenetic phenomenon, which adds methyl groups into DNA. This study reveals methylation of a nucleoside antibiotic drug 1‐(β‐D ‐ribofuranosyl)‐2‐pyrimidinone (zebularine or zeb) with respect to its methylated analog, 1‐(β‐D ‐ribofuranosyl)‐5‐methyl‐2‐pyrimidinone (d5) using density functional theory calculations in valence electronic space. Very similar infrared spectra suggest that zeb and d5 do not differ by types of the chemical bonds, but distinctly different Raman spectra of the nucleoside pair reveal that the impact caused by methylation of zeb can be significant. Further valence orbital‐based information details on valence electronic structural changes caused by methylation of zebularine. Frontier orbitals in momentum space and position space of the molecules respond differently to methylation. Based on the additional methyl electron density concentration in d5, orbitals affected by the methyl moiety are classified into primary and secondary contributors. Primary methyl contributions include MO8 (57a), MO18 (47a), and MO37 (28a) of d5, which concentrates on methyl and the base moieties, suggest certain connection to their Frontier orbitals. The primary and secondary methyl affected orbitals provide useful information on chemical bonding mechanism of the methylation in zebularine. © 2011 Wiley Periodicals, Inc. J Comput Chem, 2011     

Surfactant design for the 1,1,1,2-tetrafluoroethane-water interface: ab initio calculations and in situ high-pressure tensiometry

In situ high-pressure tensiometry and ab initio calculations were used to rationally design surfactants for the 1,1,1,2-tetrafluoroethane-water (HFA134a|W) interface. Nonbonded pair interaction (binding) energies (E(b)) of the complexes between HFA134a and candidate surfactant tails were used to quantify the HFA-philicity of selected moieties. The interaction between HFA134a and an ether-based tail was shown to be predominantly electrostatic in nature and much more favorable than that between HFA134a and a methyl-based fragment. The interfacial activity of (i) amphiphiles typically found in FDA-approved pressurized metered-dose inhaler (pMDI) formulations, (ii) a series of nonionic surfactants with methylene-based tails, and (iii) a series of nonionic surfactants with ether-based tails was investigated at the HFA134a|W interface using in situ tensiometry. This is the first time that the tension of the surfactant-modified HFA134a|W interface has been reported in the literature. The ether-based surfactants were shown to be very interfacially active, with tension decreasing by as much as 27 mN.m(-)(1). However, the methyl-based surfactants, including those from FDA-approved formulations, did not exhibit high activity at the HFA134a|W interface. These results are in direct agreement with the E(b) calculations. Significant differences in interfacial activity are noted for surfactants at the 2H,3H-perfluoropentane (HPFP)|water and HFA134a|W interfaces. Care should be taken, therefore, when results from the mimicking solvent (HPFP) are extrapolated to HFA134a-based systems. The results shown here are of relevance in the selection of surfactants capable of forming and stabilizing reverse aqueous aggregates in HFA-based pMDIs, which are promising formulations for the systemic delivery of biomolecules to and through the lungs.     

Constrained melting of graphene-based phase change nanocomposites inside a sphere

Journal of Thermal Analysis and Calorimetry - In the present work, the melting behavior of a fatty acid-based phase change material (PCM) with the addition of functionalized graphene nanoplatelets...     

Sol-Gel Synthesis of Nanocrystalline PZT Using a Novel System

A simple system has been developed for the preparation of lead zirconate titanate, Pb(Zr _x Ti_{1 – x} )O₃ powders by sol-gel process. To achieve stable and homogeneous precursor solutions, chelating ligands such as acetic acid and acetylacetone have been used for the chemical modification of titanium and zirconium starting precursors. Phase-pure PZT powders were obtained, through a pyrochlore-free pathway, from the amorphous xerogel after heat treatment at 600°C. The formation of the crystalline phase, compositional homogeneity, sinterability, dielectric and piezoelectric characteristics of PZT are reported.