Prediction of DNA far-IR absorption spectra based on normal mode analysis

 We present a computational method which couples normal mode analysis in internal coordinates of a molecule with very far IR spectroscopy. The analytical expression for the dependence of IR absorption on frequency incorporates frequencies and optical activities of each normal mode. In order to predict far-IR spectra of a molecule we evaluate the optical activity of each normal mode. This optical activity is determined by the vibration amplitude of the dipole moment produced by a normal mode. We calculated normal modes of DNA double-helical fragments (dA)₁₂ · (dT)₁₂ and (dA-dT)₆ · (dA-dT)₆ and evaluated their optical activities. These were found to be very sensitive to the DNA base-pair sequence. The positions of the resonance peaks in the calculated absorption spectrum of (dA)₁₂ · (dT)₁₂ are in a good agreement with those obtained by Fourier transform IR spectroscopy (Powell JW et al. 1987 Phys Rev A 35: 3929–3939). Received: 20 June 2000 / Accepted: 5 January 2001/ Published online: 3 May 2001     

Thermodynamic Properties and Molecular Dipole Moments of Antimony Compounds from Quantum Chemical Evaluations

By the PM3 method, standard values of entropy, heats and Gibbs energies of formation and dipole moments of the molecules have been computed for a series of inorganic and organic antimony compounds. Linear dependences P exper = bP theor (where P is any of the mentioned properties) have been stated, allowing a priori evaluation of thermodynamic characteristics and molecular dipole moments of Sb-containing substances. It has been concluded that triphenylstibinedichloride in benzene solution, as well as triphenylstibinehydroxychloride in dioxane medium, exist in the form of trigonal bipyramid with two axial chlorine and oxygen atoms.     

Crystallographically-based analysis of the NMR spectra of maghemite

All possible iron environments with respect to nearest neighbour vacancies in vacancy-ordered and vacancy-disordered maghemite have been evaluated and used as the foundation for a crystallographically-based analysis of the published NMR spectra of maghemite. The spectral components have been assigned to particular configurations and excellent agreement obtained in comparing predicted spectra with published spectra taken in applied magnetic fields. The broadness of the published NMR lines has been explained by calculations of the magnetic dipole fields at the various iron sites and consideration of the supertransferred hyperfine fields.     

Analytic solution of the wave equation for an electron in the field of a molecule with an electric dipole moment

We relax the usual diagonal constraint on the matrix representation of the eigenvalue wave equation by allowing it to be tridiagonal. This results in a larger representation space that incorporates an analytic solution for the non-central electric dipole potential cosθ/r², which was believed not to belong to the class of exactly solvable potentials. Therefore, we were able to obtain a closed form solution of the three-dimensional time-independent Schrödinger equation for a charged particle in the field of a point electric dipole that could carry a nonzero net charge. This problem models the interaction of an electron with a molecule (neutral or ionized) that has a permanent electric dipole moment. The solution is written as a series in a basis composed of special functions that support a tridiagonal matrix representation for the angular and radial components of the wave operator. Moreover, this solution is for all energies, the discrete (for bound states) as well as the continuous (for scattering states). The expansion coefficients of the radial and angular components of the wavefunction are written in terms of orthogonal polynomials satisfying three-term recursion relations. For the Coulomb-free case, where the molecule is neutral, we calculate critical values for its dipole moment below which no electron capture is allowed. These critical values are obtained not only for the ground state, where it agrees with already known results, but also for excited states as well.     

Measurements of line intensities and determination of transition moment parameters from experimental data for the ν1 and ν3 bands of D2S

First measurements of line intensities for ν₁ and ν₃ bands of D₂³²S are reported. About 300 intensities of D₂³²S vibration–rotation lines were obtained from experimental high-resolution spectra recorded in the 1810–2051 cm⁻¹ region with the Fourier Transform Spectrometer built in Reims. Empirical values of transition moment parameters for ν₁ and ν₃ bands of D₂³²S were determined for the first time using a least-square fit to the observed intensities. Experimental D₂³²S intensities were compared with recent global variational predictions [Vl.G. Tyuterev, L. Régalia-Jarlot, D.W. Schwenke, S.A. Tashkun, Y.G. Borkov, C. R. Phys. 5 (2004) 189–199] computed from isotopically invariant potential and dipole moment functions of the hydrogen sulphide molecule. Average discrepancy between these calculations and our observed data was 0.03 cm⁻¹ for line positions of this spectral range. The discrepancy between these calculations and our measurements for the sum of line intensities was 5.5% and 3.5% for the ν₁ and ν₃ bands, correspondingly.     

Metal adsorption on monolayer blue phosphorene: A first principles study

We investigated the electronic structure, adsorption energies, magnetic properties, dipole moment and work function of metal adatoms (Mg, Cr, Mo, Pd, Pt, and Au) adsorption on a blue phosphorene monolayer. For Mg, Pt and Au metals, the most stable state was found in hollow site while for Cr, Mo and Pd metals we found an adsorption in valley site. We suggest that the Pd and Pt atoms prefer 2D growth mode while the Mg, Cr, Mo and Au atoms prefer 3D island growth mode on monolayer phosphorene. The electronic band structures and magnetic properties were dependent on the doping site and dopant materials. For instance, the semiconducting features were preserved in Mg, Pd, Pt, and Au doped systems. However, the Cr and Mo doped systems displayed half-metallic band structures. The total magnetic moment of 4.05, 2.0 and $0.77{\text{μ}}_B/\text{impurity}$ atom were obtained in Cr, Mo and Au doped systems whereas the Mg, Pd and Pt doped systems remained nonmagnetic. We also investigated the magnetic interaction between two transition metal impurities. We observed ferromagnetic coupling between two transition metal impurities in Cr and Mo doped systems while the Au doped system displayed almost degenerated magnetic state. For Mg, Cr, and Mo adsorptions, we found relatively large values of dipole moments compared to those in the Pd, Pt and Au adsorptions. This resulted in a significant suppression of the work function in Mg, Cr and Mo adsorptions. Overall, adsorption can tune the physical and magnetic properties of phosphorene monolayer.     

Design,fabrication and characterization of a Schottky diode on an AlGaAs/GaAs HEMT structure for on-chip RF power detection

A Schottky diode was designed and fabricated on an n-AlGaAs/GaAs high electron mobility transistor (HEMT) structure for RF power detection. The processing steps used in the fabrication were the conventional steps used in standard GaAs processing. Current–voltage measurements showed that the devices had rectifying properties with a barrier height of 0.5289–0.5468 eV. The fabricated Schottky diodes detected RF signals well and their cut-off frequencies up to 20 GHz were estimated in direct injection experiments. To achieve a high cut-off frequency, a smaller Schottky contact area is required. The feasibility of direct integration with the planar dipole antenna via a coplanar waveguide transmission line without insertion of matching circuits was discussed. A higher cut-off frequency can also be achieved by reducing the length of the coplanar waveguide transmission line. These preliminary results represent a breakthrough as regards direct on-chip integration technology, towards the realization of a ubiquitous network society.     

Ground and excited state dipole moments of coumarin 337 laser dye

This paper reports that the effects of spectral properties of coumarin 337 laser dye have been investigated in different solvents considering solvent parameters like dielectric constant (?) and refractive index (n) of different solvent polarities. The ground state (μ_g) and excited state (μ_e) dipole moments are calculated using Lippert's, Bakhshiev's, and Kawski-Chamma-Viallet's equations. In all these three equations the variation of Stokes shift was used to calculate the excited state (μ_e) dipole moment. It is observed that the Bakhshiev method is comparatively better than the other two methods for ground state and excited state dipole moment calculations. The angle between the excited state and ground state dipole moments is also calculated.     

Inverse grand-canonical Monte Carlo investigation of the activity coefficient of polar fluids

The inverse grand-canonical Monte Carlo (IGCMC) simulation is applied to calculate the activity coefficient of polar fluid. Molecules of the fluid are represented by hard spheres with a point electric dipole moment immersed in the centre. The electron polarizability of the fluid is described by the permittivity ?_∞. Good agreement between the IGCMC technique and Widom method data is obtained. Comparison with the results of the mean spherical approximation shows that this theory underestimate the Coulombic interactions while the agreement with PT is good. The dependence of the activity coefficient on the number density, electric dipole moment, molecular diameter, and temperature is presented. The Coulombic contribution to the activity coefficient is separated.     

13C NMR spectroscopic studies of the behaviors of carbonyl compounds in various solutions

¹³C NMR spectroscopic studies were performed for carbonyl compounds having a hydroxyl group, a carboalkoxy group, an acetoxy group, or a carboxyl group in various solvents with different polarities for observation of their behaviors of ¹³C NMR chemical shifts of carbonyl carbons in solutions. It was found that the chemical shifts of the carbonyl carbons in ¹³C NMR have good correlation with the empirical parameter for solvent polarities, E_T^N, depending on the structures. Inter- or intramolecular hydrogen bonding and dipolar-dipolar interactions appear to play a key role in this observation.