Investigating 3He diffusion NMR in the lungs using finite difference simulations and in vivo PGSE experiments

Finite difference simulations have been used to model (3)He gas diffusion in simulated lung tissue. The technique has the advantage that a wide range of structural models and diffusion-sensitizing gradient waveforms can be investigated, for which analytical methods would otherwise be virtually impossible. Results from simulations and in vivo pulsed-gradient-spin-echo (PGSE) experiments show that the apparent diffusion coefficient (ADC) is a function of diffusion time and gradient strength, and suggests diffusion is locally anisotropic. The simulations have been compared to recent work on an analytical model that characterizes lung tissue as a series of independent cylinders. The results presented may have clinical implications for (3)He ADC measurements in assessing lung diseases such as chronic-obstructive-pulmonary-disease.     

A comparative study of mid-infrared diffuse reflection (DR) and attenuated total reflection (ATR) spectroscopy for the detection of fungal infection on RWA2-corn

An investigation into the rapid detection of mycotoxin-producing fungi on corn by two mid-infrared spectroscopic techniques was undertaken. Corn samples from a single genotype (RWA2, blanks, and contaminated with Fusarium graminearum) were ground, sieved and, after appropriate sample preparation, subjected to mid-infrared spectroscopy using two different accessories (diffuse reflection and attenuated total reflection). The measured spectra were evaluated with principal component analysis (PCA) and the blank and contaminated samples were classified by cluster analysis. Reference data for fungal metabolites were obtained with conventional methods. After extraction and clean-up, each sample was analyzed for the toxin deoxynivalenol (DON) by gas chromatography with electron capture detection (GC-ECD) and ergosterol (a parameter for the total fungal biomass) by high-performance liquid chromatography with diode array detection (HPLC-DAD). The concentration ranges for contaminated samples were 880–3600 g/kg for ergosterol and 300–2600 g/kg for DON. Classification efficiency was 100% for ATR spectra. DR spectra did not show as obvious a clustering of contaminated and blank samples. Results and trends were also observed in single spectra plots. Quantification using a PLS1 regression algorithm showed good correlation with DON reference data, but a rather high standard error of prediction (SEP) with 600 g/kg (DR) and 490 g/kg (ATR), respectively, for ergosterol. Comparing measurement procedures and results showed advantages for the ATR technique, mainly owing to its ease of use and the easier interpretation of results that were better with respect to classification and quantification.     

Hodge Theory and Geometry

Hodge theory for a smooth algebraic curve includes both theHodge structure (period matrix) on cohomology and the use ofthat Hodge structure to study the geometry of the curve, viathe Jacobian variety. Hodge extended the theory of the periodmatrix to smooth algebraic varieties of any dimension, definingin general a Hodge structure on the cohomology of the variety.He gave a few applications to the geometry of the variety, butthese did not attain the richness of the Jacobian variety. Inrecent years, Hodge theory has been successfully extended toarbitrary varieties, and to families of varieties. In this expositorypaper, some of these developments are reviewed, with specialemphasis on instances where these extensions can be used tostudy the geometry – especially the algebraic cycles –on the variety. 2000 Mathematics Subject Classification 14CDFJ.     

Accurate mass measurement and tandem mass spectrometry of intact globin chains identify the low proportion variant hemoglobin Lepore-Boston-Washington from the blood of a heterozygote

Within a mixture of proteins, minor polymorphic components are difficult to identify using a conventional proteomic approach. Their identification generally requires multi-dimensional separation steps, before or after proteolytic cleavage, followed by sequence analysis of the proteolytic products. In this study, we investigated the potential of tandem mass spectrometry for protein characterization by identifying the delta-beta hybrid human hemoglobin variant Lepore-Boston-Washington using electrospray ionization tandem mass spectrometry. Hemoglobin Lepore-Boston-Washington occurs mainly in heterozygotes, where it comprises approximately 10% of the total non-alpha-chains, the dominant non-alpha-chain being the normal beta (approximately 90%). Furthermore, Hemoglobin Lepore-Boston-Washington has an average molecular mass (15,865.23 Da) that is only 2 Da lower than that of the normal beta-chain (15,867.24 Da). Consequently, it cannot be resolved from the normal beta-chain by mass spectrometry. Here we show how Hemoglobin Lepore-Boston-Washington was identified directly from the diluted blood of a heterozygote by analyzing the product ions from the Lepore-Boston-Washington and normal beta-chain ions without prior separation of the individual chains. This study shows the potential of the tandem mass spectrometry for identifying a minor component in an unseparated mixture of proteins.     

Inducing structural polarity using fluorinated organics: X-ray crystal structures of p-XC6F4CN (X = Cl,Br, I)

Non-centrosymmetric structures are promoted through the use of perfluoroaromatics containing structure-directing CN...X (X = Br, I) supramolecular synthons.     

An in vitro study of the use of photodynamic therapy for the treatment of natural oral plaque biofilms formed in vivo.

Seven-day oral plaque biofilms have been formed on natural enamel surfaces in vivo using a previously reported in situ device. The devices are then incubated with a cationic Zn(II) phthalocyanine photosensitizer and irradiated with white light. Confocal scanning laser microscopy (CSLM) of the biofilms shows that the photosensitizer is taken up into the biomass of the biofilm and that significant cell death is caused by photodynamic therapy (PDT). In addition, the treated biofilms are much thinner than the control samples and demonstrate a different structure from the control samples, with little evidence of channels and a less dense biomass. Transmission electron microscopy (TEM) of the in vivo-formed plaque biofilms reveals considerable damage to bacteria in the biofilm, vacuolation of the cytoplasm and membrane damage being clearly visible after PDT. These results clearly demonstrate the potential value of PDT in the management of oral biofilms.     

Resolution and uniqueness of estimated parameters of a model of thin filament regulation in solution

The estimation of chemical kinetic rate constants for any non-trivial model is complex due to the nonlinear effects of second order chemical reactions. We developed an algorithm to accomplish this goal based on the Damped Least Squares (DLS) inversion method and then tested the effectiveness of this method on the McKillop–Geeves (MG) model of thin filament regulation. The kinetics of MG model is defined by a set of nonlinear ordinary differential equations (ODEs) that predict the evolution of troponin–tropomyosin–actin and actin–myosin states. The values of the rate constants are estimated by integrating these ODEs numerically and fitting them to a series of stopped-flow pyrene fluorescence transients of myosin-S1 fragment binding to regulated actin in solution. The accuracy and robustness of the estimated rate constants are evaluated for DLS and two other methods, namely quasi-Newton (QN) and simulated annealing (SA). The comparison of these methods revealed that SA provides the best estimates of the model parameters because of its global optimization scheme. However it converges slowly and does quantify the uniqueness of the estimated parameters. On the other hand the QN method converges rapidly but only if the initial guess of the parameters is close to the optimum values, otherwise it diverges. Overall, the DLS method proves to be the most convenient method. It converges fast and was able to provide excellent estimates of kinetic parameters. Furthermore, DLS provides the model resolution matrix, which quantifies the interdependence of model parameters thereby evaluating the uniqueness of their estimated values. This property is essential for estimating of the dependence of the model parameters on experimental conditions (e.g. Ca²⁺ concentration) when it is assessed from noisy experimental data such as pyrene fluorescence from stopped-flow transients. The advantages of the DLS method observed in this study should be further examined in other physicochemical systems to firmly establish the observed effectiveness of DSL vs. the other parameter estimation methods.     

Diffuse reflection and polarization modulation FT-IR spectrometry of surface species

Summary Two techniques for measuring the infrared spectra of adsorbed species on surfaces of different types are described. Diffuse reflectance spectra of species adsorbed on powdered substrates with a high surface area can be measured with an exceptionally high signal-to-noise ratio. The technique is illustrated by the adsorption of carbon monoxide on rhodium supported on alumina at metal loadings between 0.1 and 10%. Some doubt is cast on previous band assignments for adsorbed CO molecules. Grazing incidence reflection-absorption spectrometry can be used to measure the spectra of molecules on flat metallic substrates of very low surface area. Attempts to develop a technique for observing the intermolecular vibration between the adsorbate and the substrate using a unique triple modulation approach are discussed.

---

FT-IR-Spektrometrie mit diffuser Reflexions- und Polari-sations-Modulation von Adsorbaten an Oberflächen

Zusammenfassung Zwei Techniken zur Messung von Infrarot-Spektren von Adsorbaten verschiedener Art werden beschrieben. Diffuse Reflexionsspektren von Adsorbaten an pulverförmigen Substraten mit einer großen Oberfläche können mit einem außerordentlich großen Signal-zu-RauschVerhältnis gemessen werden. Als Beispiel dient die Adsorption von Kohlenstoffmonoxid an Rhodium auf Aluminiumoxid bei Metallgehalten von 0,1 bis 10%. Einige Zweifel an früheren Bandzuweisungen für adsorbierte CO-Moleküle werden geäußert. Reflexions-Absorptions-Spektrometrie mit streifendem Einfall kann zur Messung der Spektren von Molekülen an flachen metallischen Substraten mit sehr geringer Oberfläche benutzt werden. Versuche zur Entwicklung einer Technik für die Beobachtung der intermolekularen Schwingungen zwischen dem Adsorbaten und dem Substrat mittels einer einzigartigen Dreifach-Modulationstechnik werden diskutiert.