硝基羟乙唑与溶菌酶反应机制的荧光光谱研究

分别在298,310,318 K温度下,利用荧光光谱法研究了pH=7.40生理条件下硝基羟乙唑(TRI)与溶菌酶(LYSO)的相互作用机理。结果表明,TRI与LYSO间通过静态猝灭方式相互作用。测定了LYSO与TRI反应的结合常数、结合位点数。利用反应过程的热力学参数,确定了LYSO-TRI体系的作用力类型;由Hill系数得出了LYSO或TRI的协同性;根据非辐射能量转移理论,确定了TRI到LYSO的结合距离,同时采用同步光谱法考察了TRI对LYSO构象的影响。     

银纳米颗粒对溶菌酶纤维化影响的浓度效应

纳米颗粒对蛋白质淀粉纤维化过程的影响机制对扩大其在生物学诊断和纳米药物应用中起到至关重要的作用. 在本研究中,通过拉曼光谱结合原子力显微镜和硫磺素T荧光光谱实验研究不同浓度银纳米颗粒条件下的溶菌酶淀粉纤维化过程. 利用四个具有代表性的拉曼光谱指标在分子水平上监测蛋白质的三级结构和二级结构的转化过程,如：Trp费米共振双峰(1340 cm^-1和1360 cm^{-1-1-1相似文献}   

Reaction mechanism of tylosin tartrate with lysozyme

Under simulated physiological conditions, the interaction between tylosin tartrate and lysozyme was investigated at pH?=?7.40 by fluorescence spectroscopy. The results indicated that tylosin tartrate could strongly quench the intrinsic fluorescence of lysozyme. By determining the quenching constants of the reaction between tylosin tartrate and lysozyme at different temperatures, the quenching mechanism was proven to be a static quenching process. The thermodynamic parameters (ΔH°, ΔS°) of the reaction between tylosin tartrate and lysozyme were obtained by the Van’t Hoff equation, and were 27.80?kJ mol^?1 and 166.28?J mol^?1 K^?1, respectively. The results showed that hydrophobic interaction between tylosin tartrate and lysozyme was dominant. Synchronous fluorescence spectra revealed that the conformation of lysozyme was changed. This method could be applied to measure the content of tylosin tartrate.     

The crystallization of lysozyme in the system of ionic liquid [BMIm][BF4]‐water

Lysozyme crystallization was conducted in the ionic liquid (IL) 1‐butyl‐3‐methylimidizolium tetrafluoroborate ([BMIm][BF₄]) with different buffer/IL proportions. It was found that the addition of [BMIm][BF₄] could promote the crystallization process, during which more lager single crystals with controllable morphologies could be obtained due to the manageable crystal growth velocity. A probable explanation was proposed based on the influence of the ionic polarization and kinetics in the lysozyme crystallization. Moreover, the transform in coordination number and the relative growth rate of different crystal faces were discussed. (© 2008 WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim)     

分子间相互作用对蛋白质晶体生长的影响

采用原子力显微镜对溶菌酶和刀豆蛋白A的分子间相互作用力的情况进行了研究, 并用动态光散射研究了此二种分子间相互作用力有较大差异的蛋白质在晶体生长条件和非生长条件下, 溶液中的聚集体的状态(大小和分散度)随浓度和温度的变化情况. 实验结果表明, 范德华力强的刀豆蛋白A在成核前, 溶液中的聚集体不能很快转变为生长基元, 导致晶体生长时间长; 而范德华力弱的溶菌酶, 溶液中的聚集体可以很快转变成生长基元, 晶体生长时间也较短.     

溶液热历史对蛋白质晶体生长影响的内在原因研究

从溶液中聚集体的角度研究了溶液的热历史改变生长出的蛋白质晶体的数目和尺寸的内在原因. 将在281 和309 K下保存1 d的两组溶菌酶溶液按不同比例混合, 加入沉淀剂生长晶体. 随着高温溶液的比例增加, 生长出的晶体数目减少, 同时溶液中生长基元的尺寸增大. 在5周内, 采用动态光散射对281, 293和309 K三种温度下保存的溶菌酶溶液中聚集体的变化情况进行监测, 发现溶液中均存在大小不同的两部分聚集体, 称之为小聚集体与多聚体. 前者的尺寸基本不随保存时间而变化, 而后者尺寸随保存时间增加而减小, 减小的速度与保存温度有关. 多聚体的尺寸经过5周后和小聚集体基本相同. 研究结果表明, 处于无序聚集阶段的溶液的均一化程度和成核阶段生长基元的尺寸受到了溶液热历史的影响, 并最终对晶体的数目产生影响.     

Unraveling the Compositional and Molecular Features Involved in Lysozyme-Benzothiazole Derivative Interactions

In this work we present a computational analysis together with experimental studies, focusing on the interaction between a benzothiazole (BTS) and lysozyme. Results obtained from isothermal titration calorimetry, UV-vis, and fluorescence were contrasted and complemented with molecular docking and machine learning techniques. The free energy values obtained both experimentally and theoretically showed excellent similarity. Calorimetry, UV-vis, and 3D/2D-lig-plot analysis revealed that the most relevant interactions between BTS and lysozyme are based on a predominance of aromatic, hydrophobic Van der Waals interactions, mainly aromatic edge-to-face (T-shaped) π-π stacking interactions between the benzene ring belonging to the 2-(methylthio)-benzothiazole moiety of BTS and the aromatic amino acid residue TRP108 of the lysozyme receptor. Next, conventional hydrogen bonding interactions contribute to the stability of the BTS-lysozyme coupling complex. In addition, mechanistic approaches performed using elastic network models revealed that the BTS ligand theoretically induces propagation of allosteric signals, suggesting non-physiological conformational flexing in large blocks of lysozyme affecting α-helices. Likewise, the BTS ligand interacts directly with allosteric residues, inducing perturbations in the conformational dynamics expressed as a moderate conformational softening in the α-helices H1, H2, and their corresponding β-loop in the lysozyme receptor, in contrast to the unbound state of lysozyme.     

NMR at 900 MHz

The very first high-resolution NMR spectra recorded at 900 MHz in July 2000 have demonstrated the benefits of increased magnetic field strength for studies of large biomolecules such as proteins and nucleic acids. Increased sensitivity and resolution for such molecules can only be observed in experiments that are optimized for transverse relaxation (TROSY). Substantial effects of magnetic alignment can easily be observed not only in paramagnetic proteins, but even in small molecules, such as chloroform. Such effects can be very useful for structural studies of biopolymers. The extreme resolution allows studies of very weak interactions in proteins. For instance, long-range H/D isotope effects are easily observed in H-N correlation experiments. The first systematic studies of relaxation properties of N-15 nuclei have been carried out for proteins at 500, 600, 800, and 900 MHz.     

Preferential solvation of lysozyme by dimethyl sulfoxide in binary solutions of water and dimethyl sulfoxide

To reveal the denaturation mechanism of lysozyme by dimethyl sulfoxide (DMSO), thermal stability of lysozyme and its preferential solvation by DMSO in binary solutions of water and DMSO was studied by differential scanning calorimetry (DSC) and using densities of ternary solutions of water (1), DMSO (2) and lysozyme (3) at 298.15 K. A significant endothermic peak was observed in binary solutions of water and DMSO except for a solution with a mole fraction of DMSO (x ₂) of 0.4. As x ₂ was increased, the thermal denaturation temperature T _m decreased, but significant increases in changes in enthalpy and heat capacity for denaturation, ΔH _cal and ΔC _p, were observed at low x ₂ before decreasing. The obtained amount of preferential solvation of lysozyme by DMSO (∂g ₂/∂g ₃) was about 0.09 g g⁻¹ at low x ₂, indicating that DMSO molecules preferentially solvate lysozyme at low x ₂. In solutions with high x ₂, the amount of preferential solvation (∂g ₂/∂g ₃) decreased to negative values when lysozyme was denatured. These results indicated that DMSO molecules do not interact directly with lysozyme as denaturants such as guanidine hydrochloride and urea do. The DMSO molecules interact indirectly with lysozyme leading to denaturation, probably due to a strong interaction between water and DMSO molecules.     

Choice of Force Fields and Water Models for Sampling Solution Conformations of Bacteriophage T4 Lysozyme

A protein may exist as an ensemble of different conformations in solution, which cannot be represented by a single static structure. Molecular dynamics (MD) simulation has become a useful tool for sampling protein conformations in solution, but force fields and water models are important issues. This work presents a case study of the bacteriophage T4 lysozyme (T4L). We have found that MD simulations using a classic AMBER99SB force field and TIP4P water model cannot well describe hinge-bending domain motion of the wild-type T4L at the timescale of one microsecond. Other combinations, such as a residue-specific force field called RSFF2+ and a dispersion-corrected water model TIP4P-D, are able to sample reasonable solution conformations of T4L, which are in good agreement with experimental data. This primary study may provide candidates of force fields and water models for further investigating conformational transition of T4L.