Light and heat control over secondary structure and amyloid-like fiber formation in an overcrowded-alkene-modified Trp zipper

The external photocontrol over peptide folding, by the incorporation of molecular photoswitches into their structure, provides a powerful tool to study biological processes. However, it is limited so far to switches that exhibit only a rather limited geometrical change upon photoisomerization and that show thermal instability of the photoisomer. Here we describe the use of an overcrowded alkene photoswitch to control a model β-hairpin peptide. This photoresponsive unit undergoes a large conformational change and has two thermally stable isomers which has major influence on the secondary structure and the aggregation of the peptide, permitting the phototriggered formation of amyloid-like fibrils.     

Organic Cage Dumbbells

Molecular dumbbells with organic cage capping units were synthesised via a multi-component imine condensation between a tri-topic amine and di- and tetra-topic aldehydes. This is an example of self-sorting, which can be rationalised by computational modelling.     

Multi-scale simulation reveals that an amino acid substitution increases photosensitizing reaction inputs in Rhodopsins

Evaluating the availability of molecular oxygen (O₂) and energy of excited states in the retinal binding site of rhodopsin is a crucial challenging first step to understand photosensitizing reactions in wild-type (WT) and mutant rhodopsins by absorbing visible light. In the present work, energies of the ground and excited states related to 11-cis-retinal and the O₂ accessibility to the β-ionone ring are evaluated inside WT and human M207R mutant rhodopsins. Putative O₂ pathways within rhodopsins are identified by using molecular dynamics simulations, Voronoi-diagram analysis, and implicit ligand sampling while retinal energetic properties are investigated through density functional theory, and quantum mechanical/molecular mechanical methods. Here, the predictions reveal that an amino acid substitution can lead to enough energy and O₂ accessibility in the core hosting retinal of mutant rhodopsins to favor the photosensitized singlet oxygen generation, which can be useful in understanding retinal degeneration mechanisms and in designing blue-lighting-absorbing proteic photosensitizers.     

An Analytical Model for Flow of Seawater Adjacent to an Igneous Wall

Transport in Porous Media - We develop an analytical model describing the flow of NaCl– $$\hbox {H}_2\hbox {O}$$ in a saturated porous medium adjacent to a hot vertical wall and apply the...     

Improving the approximation of the probability density function of random nonautonomous logistic‐type differential equations

In this paper, we address the problem of approximating the probability density function of the following random logistic differential equation: P^′(t,ω)=A(t,ω)(1?P(t,ω))P(t,ω), t∈[t₀,T], P(t₀,ω)=P₀(ω), where ω is any outcome in the sample space Ω. In the recent contribution [Cortés, JC, et al. Commun Nonlinear Sci Numer Simulat 2019; 72: 121–138], the authors imposed conditions on the diffusion coefficient A(t) and on the initial condition P₀ to approximate the density function f₁(p,t) of P(t): A(t) is expressed as a Karhunen–Loève expansion with absolutely continuous random coefficients that have certain growth and are independent of the absolutely continuous random variable P₀, and the density of P₀, , is Lipschitz on (0,1). In this article, we tackle the problem in a different manner, by using probability tools that allow the hypotheses to be less restrictive. We only suppose that A(t) is expanded on L²([t₀,T]×Ω), so that we include other expansions such as random power series. We only require absolute continuity for P₀, so that A(t) may be discrete or singular, due to a modified version of the random variable transformation technique. For , only almost everywhere continuity and boundedness on (0,1) are needed. We construct an approximating sequence of density functions in terms of expectations that tends to f₁(p,t) pointwise. Numerical examples illustrate our theoretical results.     

Approximation locale précisée dans des problèmes multi-échelles avec défauts localisés

We proceed here with our systematic study, initiated in [3], of multiscale problems with defects, within the context of homogenization theory. The case under consideration here is that of a diffusion equation with a diffusion coefficient of the form of a periodic function perturbed by an $L^r({\mathbb{R}}^d)$, $1<r<+\infty$, function modelling a localized defect. We outline the proof of the following approximation result: the corrector function, the existence of which has been established in [3], [4], allows us to approximate the solution to the original multiscale equation with essentially the same accuracy as in the purely periodic case. The rates of convergence may however vary, and are made precise, depending upon the $L^r$ integrability of the defect. The generalization to an abstract setting is mentioned. Our proof exactly follows, step by step, the pattern of the original proof of Avellaneda and Lin in [1] in the periodic case, extended in the works of Kenig and collaborators [12], and borrows a lot from it. The details of the results announced in this Note are given in our publications [2], [11].     

Validation of an analytical method to quantify the permeation and penetration of flurbiprofen into human pharynx tissue

The aim of this investigation was to develop receiver and extraction fluids, and subsequently validate an analytical method to quantify the permeation and penetration of flurbiprofen into human pharynx tissue using a Franz diffusion cell. The solubility and stability of flurbiprofen in a suitable receiver fluid, and a suitable extraction method and fluid to recover and quantitate flurbiprofen from human pharynx tissue, were investigated using high‐performance liquid chromatography (HPLC). The potential interference of human pharynx tissue in the receiver fluid was also investigated. The HPLC analytical method was successfully validated according to current guidelines. The final receiver fluid demonstrated sufficient solubility and stability, and the extraction method and fluid resulted in >95% recovery of flurbiprofen following exposure to human pharynx tissue. The lower limit of quantitation of flurbiprofen was 0.045 μg/mL in both the receiver and extraction fluids. There was no interference of the human pharynx tissue with the HPLC method. This investigation validated an analytical method for quantitating flurbiprofen, and determined a suitable receiver fluid and extraction method and fluid, which can be used to investigate the permeation and penetration of flurbiprofen through human pharynx tissue using the Franz diffusion cell method.     

Artificial neural network for aspect ratio prediction of lignocellulosic micro/nanofibers

Cellulose - In this work a wide sample analysis, under similar conditions, has been carried out and a calibration strategy based on a careful selection of input variables combined with sensitivity...