Quality evaluation of fingerprints of herbal medicine with chromatographic data

In this study, local least squares (LLS) and principal component analysis (PCA) were applied to deal with the disturbances in a data set of chromatographic fingerprints after necessary data transformations. It has been demonstrated that PCA with standard normal variate (SNV) transformation of data led to meaningful classification of 33 different Erigeron breviscapus herbal samples. The result was also corroborated by variance squares discriminant method. The quality of herbal objects was further evaluated, and the causes of this fact have been explained from a chemical point of view. At the same time, it implied an idea for qualitative evaluation of the herbal objects with a common class pattern of chromatographic fingerprints.     

Nitrido-Sodalithe. II. Synthese,Struktur und Eigenschaften von M(6+(y/2)–x)H2x[P12N24]Zy mit M = Fe,Co, Ni,Mn; Z = Cl,Br, I; 0 ≤ x ≤ 4; y ≤ 2

Nitrido-Sodalites. II. Synthesis, Crystal Structure, and Properties of M_{(6+(y/2)–x)}H_2x[P₁₂N₂₄]Z_y with M = Fe, Co, Ni, Mn; Z = Cl, Br, I; 0 ≤ x ≤ 4; y ≤ 2 The nitrido sodalites M_{(6+(y/2)–x)}H_2x[P₁₂N₂₄]Z_y with M = Fe, Co, Ni, Mn; Z = Cl, Br, I; 0 ≤ x ≤ 4; y ≤ 2 are obtained by the reaction of HPN₂ or [PN(NH₂)₂]₃ with the metal halogenide MZ₂ (T = 700°C). The compounds are isotypic to Zn_(7–x)H_2x[P₁₂N₂₄]Cl₂. An increase of the ionic radii of the cations or anions results in an expansion of the lattice which is caused by an increase of the P? N? P angle. The influence of the cation is more dominant than that of the anion. By reacting [PN(NH₂)₂]₃ with metal halogenide (MZ₂) hydrogen free, X-ray amorphous products are obtained. The formation of the chloride-containing P? N-sodalite in this reaction begins at temperatures below 450°C.     

A Method for Clustering and Screening of Long-dimensional Chemical Data Based on Fingerprints and Similarity Measurements

A method for the treatment of long-dimensional chemical data arrays is presented in this work with the aim of maximising classification models. The method is based on the construction of fingerprints and the subsequent generation of a similarity matrix. The similarity calculation has been modified through a scaling process to take into account different significance shown by the variables. The method was applied to spectral measurements of wines and several aspects were studied, namely: threshold considered in the construction of fingerprints and patterns, weighting factor used for scaling, normalisation method, etc. The application of both Principal Components Analysis and Soft-Independent Modelling of Class Analogies to the similarity matrices gave better classifications of the information than those obtained using original data.     

Partial least-squares regression and fuzzy clustering — A joint approach

Chemical and physical analyses of malt, the main ingredient of beer, have been used to predict the concentration of certain volatile compounds in the finished beer.The prediction was done by means of the partial least squares regression (PLS2) in SIMCA. The total data set as well as individual malt clusters were submitted to PLS analysis. Best prediction was obtained by separating the total object matrix in classes according to similarity found by fuzzy pattern recognition (FCV). FCV was also used to separate the beer variables in classes and to select the subset of variables to be predicted.A joint approach of fuzzy pattern recognition to identify groups of samples and SIMCA-PLS2 to predict several dependent variables is suggested as a powerful tool in process-analytical chemistry.     

Liquid-liquid equilibria for mixtures of (ethylene carbonate + aromatic hydrocarbon + cyclohexane)

Liquid-liquid equilibrium data for mixtures of (ethylene carbonate + benzene + cyclohexane) at temperatures 303.15 and 313.15 K and (ethylene carbonate + BTX + cyclohexane) at temperature 313.15 K are reported, where the BTX is benzene, toluene and m-xylene. The compositions of liquid phases at equilibrium were determined by gas liquid chromatography. The selectivity factors and partition coefficients of ethylene carbonate for the extraction of benzene, toluene and m-xylene from (ethylene carbonate + BTX + cyclohexane) are calculated and presented. The obtained results are compared with the selectivity factors and partition coefficients of ethylene carbonate for the extraction of benzene from (ethylene carbonate + benzene + cyclohexane). The liquid-liquid equilibrium data were correlated with the UNIQUAC and NRTL activity coefficient models. The phase diagrams for the studied mixtures are presented and the correlated tie line results have been compared with the experimental data. The comparisons indicate the applicability of the UNIQUAC and NRTL activity coefficients model for liquid-liquid equilibrium calculations of the studied mixtures. The tie line data of the studied mixtures also were correlated using the Hand method.     

Kristallstrukturanalyse von Ammonium-catena-polyphosphat II mit Röntgenpulvertechniken

Crystal Structure Determination of Ammonium catena-Polyphosphate II by X-Ray Powder Techniques The first structure determination of one of the five modifications of ammonium-catena-polyphosphate was performed using X-ray powder diffraction data. (NH₄PO₃)_nII is formed by phase transformation of (NH₄PO₃)_nI which on its part is obtained by condensation of NH₄H₂PO₄ at 200°C in presence of urea. Modification II crystallizes in P2₁2₁2₁ (a = 1 207.9(1), b = 648.87(8), c = 426.20(4) pm; Z = 4; 291 observed reflections; R(p) = 0.089; R(wp) = 0.111; R(I, hkl) = 0.088). The chain-anion runs parallel to the shortest axis, the period of identity is two. The ammonium ion is surrounded by a distorted tetrahedron of oxygen atoms (N? O-distances range from 285 to 292 pm, hydrogen bonds of middle strength).     

Synthesis and structural characterization of [PhE(BNMe2)2]2 (E = P or As): Six-Membered P2B4 and As2B4 Rings with Unusual Structures

The reaction of either Li₂PPh or Li₂AsPh with the diborane(4) derivative B₂(NMe₂)₂Br₂ affords the compounds [PhP(BNMe₂)₂]₂ ( 1 ) or [PhAs(BNMe₂)₂]₂ ( 2 ) in good yield. Both 1 and 2 have cyclic structures featuring non-planar P₂B₄ or As₂B₄ six-membered rings which have chair configurations. Although all four borons in each ring have planar coordination, the two phosphorus or arsenic centers have different degrees of pyramidalization. Bond distances within the rings indicate that the B? B, B? P or B? As bonds are single, whereas the exo-B? N bond lengths are consistent with significant π-bonding. The ring structures of 1 and 2 are in sharp contrast to the related boron-nitrogen species (t-BuN)₂N₄Me₄ which has a nido-N₂B₄ framework. The attempted synthesis of the nitrogen analogue of 1 or 2 by using a similar approach did not result in the isolation of [PhN(BNMe₂)₂]₂, instead the tetramino diborane(4) species [B(NMe₂)NHPh]₂ ( 3 ), which has a structure similar to other tetramine diborane(4) compounds, was isolated.     

A combination of modified particle swarm optimization algorithm and support vector machine for gene selection and tumor classification

In the analysis of gene expression profiles, the number of tissue samples with genes expression levels available is usually small compared with the number of genes. This can lead either to possible overfitting or even to a complete failure in analysis of microarray data. The selection of genes that are really indicative of the tissue classification concerned is becoming one of the key steps in microarray studies. In the present paper, we have combined the modified discrete particle swarm optimization (PSO) and support vector machines (SVM) for tumor classification. The modified discrete PSO is applied to select genes, while SVM is used as the classifier or the evaluator. The proposed approach is used to the microarray data of 22 normal and 40 colon tumor tissues and showed good prediction performance. It has been demonstrated that the modified PSO is a useful tool for gene selection and mining high dimension data.     

基于Gene Ontology的表达谱与基因功能相似性的相关性研究

聚类是芯片数据分析中被广泛使用的方法。未知基因的功能通常通过其与已知基因在不同生物状态下具有表达相似性来进行预测。然而，还未有人就这种通过表达相似性来进行功能注释的方法的可靠性进行评估。本文利用Gene Ontology对表达相似性和基因功能相似性的相关关系进行了全面的研究。研究表明，尽管表达谱的相似性和基因功能相似性之间有一定的依赖关系，但相关性较弱。在Gene Ontology的三大类中，相对生物过程和分子功能，基因表达谱的相似性更有助于细胞组分的注释。本文的研究结果对于基因功能的预测有一定的指导意义。     

生物催化在绿色化学和新药开发中的应用

近年来生物技术领域有了突破性进展，如: 公共基因数据库(GenBank)和蛋白质数据库(PDB)中序列的指数增长，高效基因克隆和表达平台的建立，可有效改进生物催化剂专一性、选择性和稳定性的酶定向进化技术的应用。这些进展使生物催化在化学合成中日趋重要[1]。本文综述了生物催化在如下领域的成功应用：在药物生产中用于开发经济的化学酶法合成工艺，在绿色化学领域中最大程度的减少废物的产生和危险试剂的应用，在天然化学领域中对天然产物进行修饰以发现具有更好生物活性的新药物。