Parametric multiple sequence alignment and phylogeny construction

Bounds are given on the size of the parameter-space decomposition induced by multiple sequence alignment problems where phylogenetic information may be given or inferred. It is shown that many of the usual formulations of these problems fall within the same integer parametric framework, implying that the number of distinct optima obtained as the parameters are varied across their ranges is polynomially bounded in the length and number of sequences.     

Automorphisms of Green Orders and Their Derived Categories

In an earlier paper, Raphaël Rouquier and the author introduced the group of self-equivalences of a derived category. In the case of a Brauer tree algebra, we determined a nontrivial homomorphism of the Artin braid group to this group of self-equivalences. The class of Brauer tree algebras include blocks of finite group rings over a large enough field with cyclic defect groups. In the present paper we give an integral version of this homomorphism. Moreover, we identify some interesting arithmetic subgroups with natural groups of self-equivalences of the derived category.     

A Note on Cactus Trees: Variational vs. Recursive Approach

In this article we deal with the variational approach to cactus trees (Husimi trees) and the more common recursive approach, that are in principle equivalent for finite systems. We discuss in detail the conditions under which the two methods are equivalent also in the analysis of infinite (self-similar) cactus trees, usually investigated to the purpose of approximating ordinary lattice systems. Such issue is hardly ever considered in the literature. We show (on significant test models) that the phase diagram and the thermodynamic quantities computed by the variational method, when they deviates from the exact bulk properties of the cactus system, generally provide a better approximation to the behavior of a corresponding ordinary system. Generalizing a property proved by Kikuchi, we also show that the numerical algorithm usually employed to perform the free energy minimization in the variational approach is always convergent.     

On lattices embeddable into subsemigroup lattices. V. Trees

We prove that the class of finite lattices embeddable into the subsemilattice lattices of semilattices which are (n-ary) trees can be axiomatized by identities within the class of finite lattices, whence it forms a pseudovariety.     

Solution of the hyperbolic mild‐slope equation using the finite volume method

A finite volume solver for the 2D depth‐integrated harmonic hyperbolic formulation of the mild‐slope equation for wave propagation is presented and discussed. The solver is implemented on unstructured triangular meshes and the solution methodology is based upon a Godunov‐type second‐order finite volume scheme, whereby the numerical fluxes are computed using Roe's flux function. The eigensystem of the mild‐slope equations is derived and used for the construction of Roe's matrix. A formulation that updates the unknown variables in time implicitly is presented, which produces a more accurate and reliable scheme than hitherto available. Boundary conditions for different types of boundaries are also derived. The agreement of the computed results with analytical results for a range of wave propagation/transformation problems is very good, and the model is found to be virtually paraxiality‐free. Copyright © 2003 John Wiley & Sons, Ltd.     

一类雨量预报准确性评价方法

给出了一种利用网格点的预报雨量来模拟区域内任一点预报雨量的方法,建立了预报雨量函数,进而得出预报雨量与实测雨量的整体偏方差的数学模型;利用QPF方法建立出准确率、预报效率、空报率、漏报率等评价预报方法优劣指标的数学模型,并对两种预报方法得出的数据进行了计算,得出上述模型中的数值如下:方案方法总体偏方差预报准确率漏报率空报率预报效率方法1 0.99987×10679.431%11.463%25.621%62.256%方法2 1.00518×10657.509%26.976%31.705%58.936%比较这些指标,可得第一种预报结果较好.     

求解无线传感器网络路由问题的蚁群最优化算法及其收敛性

首先将无线传感器网络的路由问题转化成求解最小Steiner树问题,然后给出了求解无线传感器网络路由的蚁群优化算法,并对算法的收敛性进行了证明．最后对找到最优解后信息素值的变化进行了分析．即在限制信息素取值的条件下,当迭代次数充分大时,该算法能以任意接近于1的概率找到最优解,并且当最优解找到后,最优树边上的信息素单调增加,而最优解以外边上的信息素在有限步达到最小值．     

求解最小Steiner树的蚁群优化算法及其收敛性

最小Steiner树问题是NP难问题,它在通信网络等许多实际问题中有着广泛的应用．蚁群优化算法是最近提出的求解复杂组合优化问题的启发式算法．本文以无线传感器网络中的核心问题之一,路由问题为例,给出了求解最小Steiner树的蚁群优化算法的框架．把算法的迭代过程看作是离散时间的马尔科夫过程,证明了在一定的条件下,该算法所产生的解能以任意接近于1的概率收敛到路由问题的最优解．     

Runge–Kutta Methods for Itô Stochastic Differential Equations with Scalar Noise

A general class of stochastic Runge–Kutta methods for Itô stochastic differential equation systems w.r.t. a one-dimensional Wiener process is introduced. The colored rooted tree analysis is applied to derive conditions for the coefficients of the stochastic Runge–Kutta method assuring convergence in the weak sense with a prescribed order. Some coefficients for new stochastic Runge–Kutta schemes of order two are calculated explicitly and a simulation study reveals their good performance.     

Second order Runge–Kutta methods for Stratonovich stochastic differential equations

The weak approximation of the solution of a system of Stratonovich stochastic differential equations with a m–dimensional Wiener process is studied. Therefore, a new class of stochastic Runge–Kutta methods is introduced. As the main novelty, the number of stages does not depend on the dimension m of the driving Wiener process which reduces the computational effort significantly. The colored rooted tree analysis due to the author is applied to determine order conditions for the new stochastic Runge–Kutta methods assuring convergence with order two in the weak sense. Further, some coefficients for second order stochastic Runge–Kutta schemes are calculated explicitly. AMS subject classification (2000)  65C30, 65L06, 60H35, 60H10