Synthesis of poly(p-phenylene)s having alternating sugar and alkyl substituents by Suzuki coupling polymerization and evaluation of their main-chain conformations

This paper reports synthesis of poly(p-phenylene)s (PPPs) having alternating sugar and alkyl substituents by Suzuki coupling polymerization of a 1,4-dibromobenzene monomer having peracetylated glucose residues with a 1,4-benzene bis(boronic acid) having alkyl chains using Pd(PPh₃)₄ in a mixed solvent of THF and NaHCO₃ aq. at reflux temperature. The polymerization proceeded with the progress of frequent deacetylation, and thus, the crude product was acetylated, followed by the isolation procedures, giving the PPP having alternating peracetylated glucose and alkyl substituents. The structure of the isolated product was confirmed by the ¹H and ¹³C NMR measurements to be the desired PPP derivative. The M_n values were estimated by GPC analysis with DMF as the eluent to be 5400-12,700. The deacetylation of the polymer completely took place using sodium methoxide in methanol/THF. The conformation of the main-chain was evaluated by the CD spectrum in comparison with that of PPP only with the glucose substituents, indicating that the present PPP derivative had the flexible nature of the main-chain by introduction of the alkyl-substituted units between glucose-substituted units. The Suzuki coupling of a 1,4-dibromobenzne monomer having disaccharide substituents with the benzene bis(boronic acid) monomer was also performed under the similar conditions. The product was precipitated from the reaction mixture, which was simply isolated by filtration. The isolated polymer was purified further by reprecipitation into diethyl ether and its structure was a PPP having free disaccharide or monosaccharide residues. This indicated occurrence of complete deacetylation as well as partial degradation of the glycosidic linkages in the disaccharides during the polymerization. The main-chain of the obtained polymer had also the flexible nature. The fluorescence spectra of the obtained PPP derivatives in this study were also measured.     

Spatial Structure of Isomers of 3,7-Dialkoxyalkyl-3,7-diazabicyclo[3.3.1]nonan-9-ols

The spatial structure of 3,7-dialkoxyalkyl-3,7-diazabicyclo[3.3.1]nonan-9-ols has been investigated with the aid of ¹H and ¹³C NMR spectroscopy. It was shown that the secondary alcohols studied exist in solution predominantly in a chair-boat conformation which proved to be energetically more favorable than a chair-chair conformation due to the formation of an intramolecular hydrogen bond (IMHB) between the unshared pair of electrons on the nitrogen atom and the hydrogen atom of the hydroxyl group.     

固态磷脂相变行为的红外和拉曼光谱研究

用红外和拉曼光谱方法在２９０～４０５Ｋ的温度范围内考察了无水二肉豆蔻酰磷脂酰乙醇胺的分子构象随温度的变化。结果表明，该磷脂在３６５Ｋ附近的熔化相变过程中，不仅酰链的构象和堆积发生了有序－无序转变，而且极性头部基团和接界区域基团也发生了结构重排；逆相变过程中，烷基链构象重新恢复了有序，但头部基团和甘油骨架构象没有恢复原始有序状态。     

环酮的构象研究进展

综述了30多年来环酮（n=8，9，10，11，12，13，14，15，16）及对称的偶数 环二酮（n=8，10，12，14，16，18，20，22，24，26）的构象研究进展。     

Pharmacophore and receptor models for neurokinin receptors

Three neurokinin (NK) antagonist pharmacophore models (Models 1-3) accounting for hydrogen bonding groups in the 'head' and 'tail' of NK receptor ligands have been developed by use of a new procedure for treatment of hydrogen bonds during superimposition. Instead of modelling the hydrogen bond acceptor vector in the strict direction of the lone pair, an angle is allowed between the hydrogen bond acceptor direction and the ideal lone pair direction. This approach adds flexibility to hydrogen bond directions and produces more realistic RMS values. By using this approach, two novel pharmacophore models were derived (Models 2 and 3) and a hydrogen bond acceptor was added to a previously published NK2 pharmacophore model [Poulsen et al., J. Comput.-Aided Mol. Design, 16 (2002) 273] (Model 1). Model 2 as well as Model 3 are described by seven pharmacophore elements: three hydrophobic groups, three hydrogen bond acceptors and a hydrogen bond donor. Model 1 contains the same hydrophobic groups and hydrogen bond donor as Models 2 and 3, but only one hydrogen bond acceptor. The hydrogen bond acceptors and donor are represented as vectors. Two of the hydrophobic groups are always aromatic rings whereas the other hydrophobic group can be either aromatic or aliphatic. In Model 1 the antagonists bind in an extended conformation with two aromatic rings in a parallel displaced and tilted conformation. Model 2 has the same two aromatic rings in a parallel displaced conformation whereas Model 3 has the rings in an edge to face conformation. The pharmacophore models were evaluated using both a structure (NK receptor homology models) and a ligand based approach. By use of exhaustive conformational analysis (MMFFs force field and the GB/SA hydration model) and least-squares molecular superimposition studies, 21 non-peptide antagonists from several structurally diverse classes were fitted to the pharmacophore models. More antagonists could be fitted to Model 2 with a low RMS and a low conformational energy penalty than to Models 1 and 3. Pharmacophore Model 2 was also able to explain the NK1, NK2 and NK3 subtype selectivity of the compounds fitted to the model. Three NK 7TM receptor models were constructed, one for each receptor subtype. The location of the antagonist binding site in the three NK receptor models is identical. Compounds fitted to pharmacophore Model 2 could be docked into the NK1, NK2 and NK3 receptor models after adjustment of the conformation of the flexible linker connecting the head and tail. Models I and 3 are not compatible with the receptor models.     

外电场作用下寡聚苯分子导线的性质

利用Hartree-Fock 方法在6-31G*水平上对聚苯分子进行了计算研究. 分别从几何构型、分子轨道空间分布和分子轨道能级三个方面讨论了外电场对寡聚苯分子导线的影响, 给出了分子导线的性质与外电场的关系. 进一步, 连接硫原子于聚苯分子的两端, 并共价结合在金电极上. 利用非平衡格林函数方法对其在0-2.0 V 偏压下电子输运特征进行了深入研究.     

Configurational stability of bisindolylmaleimide cyclophanes: from conformers to the first configurationally stable, atropisomeric bisindolylmaleimides

The bisindolylmaleimides are selective protein kinase inhibitors that can adopt two limiting diastereomeric (syn and anti) conformations. The configurational stability of a range of substituted and macrocyclic bisindolylmaleimides was investigated by using appropriate techniques. With unconstrained bisindolylmaleimides, the size of the 2-indolyl substituents was found to affect configurational stability, though not sufficiently to allow atropisomeric bisindolylmaleimides to be obtained. However, with a tether between the two indole nitrogen atoms in place, the steric effect of 2-indolyl substituents was greatly exaggerated, leading to large differences in configurational stability. The rate of interconversion of the syn and anti conformers varied by over twenty orders of magnitude through substitution of a bisindolylmaleimide ring system, which was constrained within a macrocyclic ring. Indeed, the first examples of configurationally stable atropisomeric bisindolylmaleimides are reported; the half-life for epimerisation of these compounds at room temperature was estimated to be >10(7) years.     

Effect of obligatory replacement and conformational restriction on psychotropic activity of thyroliberin analogs

Easy lactamization of Gln(Asn)−Pro−NH₂ with the formation of cyclic dipeptides with the diketopiperazine structure (mimetics of the conformational fragments of linear tripeptides with the X−Protrans-bond) was observed in the synthesis of tripeptide Glp−Gln−Pro−NH₂ modified by the replacement of histidine with obligatory similar glutamine in thyroliberin (Glp−His−Pro−NH₂, TRH) and in the synthesis of its structural analog [Asn²]TRH. Ion peaks corresponding to the Glp and Pro amino acid residues were revealed in the mass spectra of the peptides synthesized. The biological properties of the compounds obtained were determined indicating that the obligatory replacement resulted in an increased physiological specificity of [Gln²]TRH. The enhanced activity of conformationally restricted cyclic peptides compared to linear ones suggests that the biologically active conformation responsible for the antidepressant activity of linear TRH analogs is the conformation with X−Protrans-bond. Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 10, pp. 2015–2020, October, 1998.     

时间分辨红外光谱对丝蛋白膜构象转变动力学的研究——再生蚕丝蛋白膜在高浓度醇溶液中的构象转变

运用时间分辨红外光谱研究再生蚕丝蛋白膜在高浓度醇溶液中(醇含量≥90％) 的构象转变过程．研究结果表明，丝蛋白膜在纯甲醇中可以发生构象转变，但是在 纯乙醇和纯异丙醇中却几乎不能发生构象转变．进一步研究发现，当乙醇和异丙醇 溶液中的水含量达到7％—8％时，丝蛋白开始发生构象转变．在研究的醇溶液浓度 范围中，丝蛋白发生构象转变的速率随醇溶液中水含量的增加而增大．根据实验结 果，认为丝蛋白膜在溶液体系中(无论是有机溶剂溶液还是离子溶液)发生构象转变 ，膜的溶胀是一个前提因素，其原因在于溶胀可使分子链获得运动的空间，从而通 过氢键重组而发生构象转变．     

Conformations and Structures of Two Novel Upper Rim Disubstituted Derivatives of Tetra-O-alkylcalix[4]arene: The Effect of Substituents

Two new calix[4]arene derivatives, 5,17-dinitro-26,28-dimethyoxy-25,27-dipropoxycalix[4]arene (4) and 5,17-diamino-26,28-dimethyoxy-25,27-dipropoxycalix[4]arene (5), have been synthesized and fully characterized. The ¹H NMR spectra measured in different solvents and temperatures indicated that the dominant conformer is partial cone for 4 and cone for 5, though there are some variations in relative ratio of partial cone to cone conformers. The structures of partial cone 4 and cone 5 are determined by X-ray crystallography. The different conformational behavior in compounds 4 and 5 is governed by the two substituents at the upper rim. The repulsion of the dipole due to the p-nitro substituents and weak interaction between methoxy group and the inverted anisole ring in the 4 may be responsible for stabilizing the partial cone conformation.This revised version was published online in July 2005 with a corrected issue number.