An electronic DNA microarray technique for detection and differentiation of viable Campylobacter species

An electronic oligonucleotide microarray technique was developed for detection and differentiation of the viable Campylobacter species, C. jejuni, C. coli, and C. lari. This development consisted of four major components: identification of single nucleotide polymorphisms (SNPs) within the hsp60 gene as species markers, design of fluorescently labelled SNP-based reporters, development of an electronic microarray detection, and application of the integrated technique to analysis of Campylobacter species in food samples. A unique capability of this technique is the specific detection of viable cells and not dead ones. This is achieved by using mRNA of the 60 kDa heat-shock protein as the viability marker. The identification of two unique SNPs closely located at positions 291 and 294 of the hsp60 gene enabled the differentiation of the three Campylobacter species. This technique was able to detect as few as two viable Campylobacter cells. The analysis of 19 blind Campylobacter samples showed 100% agreement with their identities obtained using pulsed-field gel electrophoresis. The analysis of six chicken samples revealed the presence of C. coli in one of the samples.     

GC/MS-based metabolomics reveals fatty acid biosynthesis and cholesterol metabolism in cell lines infected with influenza A virus

Metabolomics is the downstream of systems biology and has drawn significant interest for studying the metabolic networks from cells to organisms. To profile the metabolites in two different cell lines (A549 and AGS) infected with influenza A virus, gas chromatography coupled with mass spectrometry (GC/MS) was employed. Some differentiating metabolites in the cell lines were tentatively identified using reference library, interpreted and visualized by applying principal components analysis (PCA) and cluster heat map. Consequently, metabolic flux profiling allowed the differentiation of fatty acid biosynthesis and cholesterol metabolism during viral replication in the cell lines. The change in fatty acid turnover was also observed. Metabolomics investigation also revealed the different responses between A549 and AGS cell lines to the virus infection. From the pattern recognition results, AGS cell line might be more susceptible to influenza A virus. Regarding the fact that AGS is a poorly differentiated gastric adenocarcinoma cell line whereas A549 is a relatively differentiated lung tumor one, it is speculated that viral replication might be associated with the cell differentiations.     

First Joint ESF-NSF Symposium on Aerosols for Nanostructured Materials and Devices,Edinburgh, Scotland,September 12, 1998

Journal of Nanoparticle Research -     

Grafting of nanoporous alumina membranes and films with organic acids

In this study, direct surface grafting of nanoporous alumina membranes and glass‐supported alumina films was carried out with three different fluorinated organic acids: trifluoroacetic acid, perfluoropentanoic acid and 2,3,4,5,6‐pentafluorobenzoic acid. Elemental surface composition and chemical environment of alumina were investigated using X‐ray photoelectron spectroscopy (XPS) and Fourier transform infrared spectroscopy (FTIR). Alumina surfaces grafted with fluoro‐organic acids exhibited increased hydrophobic properties compared to ungrafted surfaces when measured using goniometry and atomic force microscopy (AFM). This work describes the evidence for surface chemical modification of alumina using direct reaction with organic acids. An AFM study of the adsorption of the immunoglobulin G (IgG) molecules on the fluoro‐organic‐acid‐grafted surfaces is reported. The results show that an ordered arrangement of immunoglobulin G structures with in‐filling of pores could be achieved only on the more hydrophobic fluoro‐organic‐acid‐grafted alumina membranes. Copyright © 2007 John Wiley & Sons, Ltd.     

Synthesis of vinylogous carbamates by rhodium(II)-catalyzed olefination of tertiary formamides with a silylated diazoester

Treatment of tertiary formamides with a silylated diazoester in the presence of a rhodium(II) catalyst leads to the formation of 3-amino-2-silyloxyacrylates in good yield. No olefination is observed if a nonsilylated diazo compound is employed. [reaction: see text]     

Engineering plasticization resistant gas separation membranes using metal–organic nanocapsules

Membrane technologies hold great potential for industrial gas separation. Nevertheless, plasticization, a common phenomenon that is responsible for the loss of gas pair selectivity and the decrease of membrane lifespan, is one of the top challenges withholding the deployment of advanced membrane materials in realistic applications. Here, we report a highly generalizable approach, that utilizes PgC₅Cu, a copper metal–organic nanocapsule (MONC) containing 24 open metal sites (OMSs) as a multi-dentate node to coordinatively crosslink polymers. By adding merely 1–3 wt% of PgC₅Cu, a wide range of carbonyl group-containing polymers can be effectively crosslinked. Through rigorous dissolution tests, molecular dynamic simulations, and in situ FT-IR spectroscopy, we qualitatively and quantitatively unveiled the coordinative binding nature at the polymer–MONC interface. As a result, we produced a series of composite membranes showing near complete plasticization resistance to CO₂, C₂H₄, and C₂H₆ under high pressure with no loss of mechanical and gas transport properties.

Ultra-small metal–organic nanocapsules (MONCs) with open metal sites (OMSs) are used as multi-dentate nodes to form coordinative crosslinking networks with polymers.     

Modeling of filtration efficiency of nanoparticles in standard filter media

The goal of this study is to model the data from the experiments of nanoparticle filtration performed at the Particle Technology Lab, University of Minnesota and at the 3M Company. Comparison shows that the experimental data for filter efficiency are bounded by the values computed from theoretical expressions which do not consider thermal rebound. Therefore thermal rebound in the tested filter media is not detected down to 3 nm particles in the present analysis. The efficiency measured experimentally is in good agreement with the theoretical expression by Stechkina (1966, Dokl. Acad. Nauk SSSR 167, 1327) when the Pectlet number Pe is larger than 100; it agrees well with the theoretical expression by Kirsch and Stechkina (1978, Fundamentals of Aerosol Science. Wiley, New York) when Pe is of the order of unit. We develop an empirical power law model for the efficiency depending on the Peclet number, which leads to satisfactory agreement with experimental results.     

Membrane receptor probes: solid-phase synthesis of biotin-Asp-PEG-arvanil derivatives

[structure: see text] A modular, flexible solid-phase synthetic route for the preparation of biotinylated cross-linking probes of membrane receptors is described. The route utilizes an orthogonal protection strategy employing a Pd[0] cleavable allyl linker attached to the probe via an aspartate residue. The versatility of the method is illustrated through the synthesis of a number of arvanil-derived cannabinoid receptor ligands displaying either a photoaffinity or a chemical cross-linking group.     

Ab initio calculation of the static structural properties of Be

An ab initio calculation of the static structural properties of Be is presented. The total structural energy is calculated using pseudopotentials and the local density-functional formalism with the atomic number as the only input. The lattice constant, Poisson's ratio, and the bulk modulus are predicted by calculating the total energy of the system. The deviations of the calculated results for lattice constants c, a, and c/a are approximately 1% when compared with experimental results. Poisson's ratio and the bulk modulus are also in reasonably good agreement with the measured values.