Compaction and tensile forces determine the accuracy of folding landscape parameters from single molecule pulling experiments

We establish a framework for assessing whether the transition state location of a biopolymer, which can be inferred from single molecule pulling experiments, corresponds to the ensemble of structures that have equal probability of reaching either the folded or unfolded states (P(fold)=0.5). Using results for the forced unfolding of a RNA hairpin, an exactly soluble model, and an analytic theory, we show that P(fold) is solely determined by s, an experimentally measurable molecular tensegrity parameter, which is a ratio of the tensile force and a compaction force that stabilizes the folded state. Applications to folding landscapes of DNA hairpins and a leucine zipper with two barriers provide a structural interpretation of single molecule experimental data. Our theory can be used to assess whether molecular extension is a good reaction coordinate using measured free energy profiles.     

Acid-induced dimerisation of 1,2-di(thien-2-yl)ethanone

Treatment of 1,2-di(thien-2-yl)ethanone with aqueous 75% (v/v) sulfuric acid gives a dimer in which the units are linked head-to-head via a thiophene-tetrahydrothiophene bond.     

A study of shear-stress relaxation anomalies in binary mixtures of monodisperse polystyrenes

We report measurements of the nonlinear relaxation moduli after a step-shear strain of polystyrene solutions with nearly monodisperse and with bidisperse distributions of molecular weight. We find, as have others, that for monodisperse solutions with M/M_e > 60, there are anomalies, such as an unusually low nonlinear modulus and a kink in a plot of shear stress versus time after the step strain. Here M is the polymer molecular weight and M_e is the entanglement molecular weight. We find that in the bidisperse solutions the anomalies persist as long as M_w/M_e > 60, where M_w is the weight-averaged molecular weight of the bidisperse solution. The persistence of the anomalies in bidisperse solutions disagrees with a theory of Marrucci and Grizzuti that attributes the anomalies to strain inhomogeneities similar to shear banding. The Marrucci-Grizzuti theory predicts that as little as 10% short chains in the bidisperse mix should eliminate the anomalies, whereas in the experiments reported here at least 30% is required. Nevertheless the way in which the anomalies disappear at high strains when one increases the fraction of low-molecular-weight component is qualitatively similar to the theoretical predictions and supports the notion that strain inhomogeneities occur in these systems. © 1992 John Wiley & Sons, Inc.     

Observation ofD S ** (2536) meson production by neutrinos in BEBC

Zeitschrift für Physik C Particles and Fields - Neutrino interactions in BEBC produce theD ** (2536) charmed strange meson. The mass of this state is 2534.2±1.2 MeV. The production rate...     

Determination of the ratior v =d v u v of the valence quark distributions in the proton from neutrino and antineutrino reactions on hydrogen and deuterium

Zeitschrift für Physik C Particles and Fields - A set of proton longitudinal polarized distributions, worked out under the assumption of small gluon polarization, is used to evaluate several...     

Slopes of effective divisors on the moduli space of stable curves

Research partially supported by NSF Grant #DMS-84-02209.     

The slow motion of two touching fluid spheres along their line of centers

The creeping motion along their line of centers of two fluid spheres in contact is analyzed. An exact solution is presented. Corrections to the Hadamard—Rybezynski equation are tabulated for various particle radii ratios and particle fluid to external fluid viscosity ratios. In the limit of infinite particle viscosity, these corrections are shown to agree with previous calculations for rigid spheres.     

U(VI) uranyl cation-cation interactions in framework germanates

The isomorphous compounds NH(4)[(UO(6))(2)(UO(2))(9)(GeO(4))(GeO(3)(OH))] (1), K[(UO(6))(2)(UO(2))(9)(GeO(4))(GeO(3)(OH))] (2), Li(3)O[(UO(6))(2)(UO(2))(9)(GeO(4))(GeO(3)(OH))] (3), and Ba[(UO(6))(2)(UO(2))(9)(GeO(4))(2)] (4) were synthesized by hydrothermal reaction at 220 °C. The structures were determined using single crystal X-ray diffraction and refined to R(1) = 0.0349 (1), 0.0232 (2), 0.0236 (3), 0.0267 (4). Each are trigonal, P(3)1c. 1: a = 10.2525(5), c = 17.3972(13), V = 1583.69(16) ?(3), Z = 2; 2: a = 10.226(4), c = 17.150(9), V = 1553.1(12) ?(3), Z = 2; 3: a = 10.2668(5), c = 17.0558(11), V = 1556.94(15) ?(3), Z = 2; 4: a = 10.2012(5), c = 17.1570(12), V = 1546.23(15) ?(3), Z = 2. There are three symmetrically independent U sites in each structure, two of which correspond to typical (UO(2))(2+) uranyl ions and the other of which is octahedrally coordinated by six O atoms. One of the uranyl ions donates a cation-cation interaction, and accepts a different cation-cation interaction. The linkages between the U-centered polyhedra result in a relatively dense three-dimensional framework. Ge and low-valence sites are located within cavities in the framework of U-polyhedra. Chemical, thermal, and spectroscopic characterizations are provided.     

Femtosecond dynamics of the ring closing process of diarylethene: a case study of electrocyclic reactions in photochromic single crystals

The cyclization reaction of the photochromic diarylethene derivative 1,2-bis(2,4-dimethyl-5-phenyl-3-thienyl)perfluorocyclopentene was studied in its single crystal phase with femtosecond transient absorption spectroscopy. The transient absorption measurements were performed with a robust acquisition scheme that explicitly exploits the photoreversibility of the molecular system and monitors the reversibility conditions. The crystalline system demonstrated 3 × 10(4) repeatable cycles before significant degradation was observed. Immediately following photoexcitation, the excited state absorption associated with the open-ring conformation undergoes a large spectral shift with a time constant of approximately 200 fs. Following this evolution on the excited state potential energy surface, the ring closure occurs with a time constant of 5.3 ps, which is significantly slower than previously reported measurements for similar derivatives in the solution phase. Time resolved electron diffraction studies were used to further demonstrate the assignment of the transient absorption dynamics to the ring closing reaction. The mechanistic details of the ring closing are discussed in the context of prior computational work along with a vibrational mode analysis using density functional theory to give some insight into the primary motions involved in the ring closing reaction.