Dynamics and thermodynamics of dimerization of parallel G-quadruplexed DNA formed from d(TTAGn) (n=3-5)

Parallel G-quadruplexes formed from oligonucleotide sequences, d(TTAGn), where n = 3-5, have been shown to form a dimer through end-to-end stacking of 3'-terminal G-tetrads. The monomers and dimers of the G-quadruplexes are in dynamic equilibrium with an exchange rate of approximately 1 s-1. A thermodynamic study demonstrated that the dimerization of the G-quadruplexes is largely enthalpic in origin.     

Endo- and aminopeptidase activities of rat cathepsin H.

Employing soluble denatured protein substrates and their derivatives, the proteolytic activity of rat cathepsin H was investigated. The enzyme showed aminopeptidase activity which sequentially released amino acid from the N-terminal of the substrate. The aminopeptidase activity did not act on N alpha-acetylated peptides and showed moderate ionic-strength dependence when methionyl-methylcoumarylamide was employed as a substrate. These results indicate that the activity essentially requires an N-terminal free amino group of the substrate and recognizes it electrostatically to some extent. On the other hand, the enzyme was also indicated to exhibit endopeptidase activity by employing appropriate N alpha-acetylated peptide substrates. In contrast to the aminopeptidase activity, the endopeptidase activity showed rather strict specificity, preferring hydrophobic residues at P2 and P3 sites. Because of the broad specificity and high efficiency of the aminopeptidase activity, it was difficult to directly observe endopeptidase activity in the digestion of large peptide substrates with a free alpha-amino terminal. Thus, this is the first experimental evidence that indicates endopeptidase activity by assigning internal peptide bonds cleaved by this activity. From this data, we proposed a model of the binding site of this enzyme.     

Lipase-catalyzed transformation of poly(lactic acid) into cyclic oligomers

Enzymatic transformations into cyclic oligomers were carried out with the objective of developing chemical recycling of poly(lactic acid)s, such as poly(D,L-lactic acid) (PDLLA), poly(D-lactic acid) (PDLA) and poly(L-lactic acid) (PLLA), which are typical biodegradable polymers. They were degraded by lipase in an organic solvent to produce the corresponding cyclic oligomer with a molecular weight of several hundreds. PDLLA (with a Mw of 84,000) was quantitatively transformed into cyclic oligomers by lipase RM (Lipozyme RM IM) in chloroform/hexane at 60 degrees C. PLLA (with a Mw of 120,000) was transformed into cyclic oligomer by lipase CA (Novozym 435) at a higher temperature of 100 degrees C in o-xylene. The oligomer structure was identified by 1H and 13C NMR spectroscopy and MALDI-TOF (matrix assisted laser desorption/ionization-time-of-flight) mass spectrometry.     

Cationic polymerization behavior of hydroxystyrenes

Solution polymerizations of o-, m- and p-hydroxystyrene with boron trifluoride etherate were investigated. The results of infrared and ultraviolet spectroscopic investigations of the polymers thus obtained indicate that p-hydroxystyrene polymer consisted mainly of the structure formed through the normal vinyl polymerization mechanism, whereas o- and m-hydroxystyrene polymers contained considerable portions of the structures due to the reaction of the vinyl group with the phenol nucleus. The rate of polymerization and the intrinsic viscosity of the polymer decreased in the order p-hydroxystyrene ? o-hydroxystyrene > m-hydroxystyrene. It was of interest that on the cationic polymerization only p-hydroxystyrene gave polymer of high molecular weight. Plausible polymerization mechanisms were considered. Solid-state polymerization of p-hydroxystyrene at solid carbon dioxide temperature with the use of boron trifluoride etherate was also investigated. Appreciable polymerization occurred only at fairly high catalyst concentrations.     

Gas-phase reactions of organic radicals and diradicals with ions

Reactions of polyatomic organic radicals with gas phase ions have been studied at thermal energy using a flowing afterglow-selected ion flow tube (FA-SIFT) instrument. A supersonic pyrolysis nozzle produces allyl radical (CH2CHCH2) and ortho-benzyne diradical (o-C6H4) for reaction with ions. We have observed: [CH2CHCH2 + H3O+ --> C3H6+ + H2O], [CH2CHCH2 + HO- --> no ion products], [o-C6H4 + H3O+ --> C6H5+ + H2O], and [o-C6H4 + HO- --> C6H3- + H2O]. The proton transfer reactions with H3O+ occur at nearly every collision (kII approximately with 10(-9) cm3 s(-1)). The exothermic proton abstraction for o-C6H4 + HO- is unexpectedly slow (kII approximately with 10(-10) cm3 s(-1)). This has been rationalized by competing associative detachment: o-C6H4 + HO- --> C6H5O + e-. The allyl + HO- reaction proceeds presumably via similar detachment pathways.     

Dependence of phase behavior of some non-ionic surfactants at the air-water interface on micellization in the bulk

The temperature-dependent surface phase behavior of two sparingly soluble surfactants, namely, ethylene glycol n-dodecyl ether (EGDE) and ethylene glycol n-tetradecyl ether (EGTE), at the air-water interface was investigated by film balance and Brewster angle microscopy (BAM). A cusp point followed by a pronounced plateau region in the surface pressure-time (pi-t) adsorption isotherms of the amphiphiles measured by film balance indicates the first-order phase transition. Bright two-dimensional condensed phase domains in a dark background are observed by BAM just after the phase transition. In both cases the critical surface pressure necessary for the phase transition increases with increasing temperature. The domains are found to be circular up to 5 and 27 degrees C for EGDE and EGTE, respectively, above which they show a fingering pattern. Condensed domains are observed up to 23 and 37 degrees C for EGDE and EGTE, respectively. The surface properties of the amphiphiles are found to be markedly affected by their tendency to aggregate in the bulk as micelles. The CMC values of both the amphiphiles show a maximum at a definite temperature, T(max), that corresponds well to their respective maximum temperatures of domain formation. An increase in temperature beyond T(max) results in an increasing trend for the formation of micelles. Consequently the system suffers from a shortage of two-dimensional surface concentration of the molecules to attain the surface pressure necessary for phase transition. With increasing temperature, the enthalpy, DeltaH(m) degrees , and entropy, DeltaS(m) degrees , of micellization change from negative to positive in both cases. An enthalpy-entropy compensation effect is found to hold for both the amphiphiles over the entire temperature range. The thermodynamic quantities reveal that the increase in temperature is favorable for micellization when the temperature exceeds the corresponding T(max) of the amphiphiles.     

Synthesis of methylpyridine derivatives. XXXV. Reaction of acetylpyridine with phosphoryl chloride to give alkynylpyridine

Reaction of 3-acetyl-4,6-dimethyl-2-(1H)pyridone ( 9a ) with phosphoryl chloride gives 2-chloro-3-ethynyl-4,6-dimethylpyridine ( 10a ). 3-Acetyl-4-hydroxy-6-methyl-2(1H)pyridone (14a) and 3-acetyl-2,6-dimethyl-4-(1H)-pyridone (21) undergoes similar reaction to give the corresponding ethynyl (16 and 23) and chlorovinyl (15 and 22) pyridines, respectively. The chlorination of 3-acetylpyridine and pyrimidine derivatives is further described.     

Faceted structures in Langmuir monolayers of diethylene glycol mono-n-octadecyl ether at the air--water interface

We have concurrently studied the surface pressure (pi) versus area (A) isotherms and microscopic surface morphological features of Langmuir monolayers of diethylene glycol mono-n-octadecyl ether (C18E2) by film balance and Brewster angle microscopy (BAM) over a wide range of temperature. At temperatures < or =10 degrees C, the monolayers exist in the form of condensed phase even just after the evaporation of the spreading solvent, suggesting that the melting point of the condensed phase is above this temperature. At > or =15 degrees C, the monolayers can exist as gas (G), liquid expanded (LE), and liquid condensed (LC) phases and undergo a pressure-induced first-order phase transition between LE and LC phases showing a sharp cusp point followed by a plateau region in the pi-A isotherms. A variety of 2-D structures, depending on the subphase temperature, are observed by BAM just after the appearance of the cusp point. It is interesting to note here that the domains attain increasingly large and compact shape as the subphase temperature increases and finally give faceted structures with sharp edges and corners at > or =30 degrees C. The BAM observations were coupled with polarization modulation infrared reflection absorption spectroscopy (PM-IRRAS) to gain better understanding regarding the conformational order and subcell packing of the molecules. The constancy of the methylene stretching modes over the studied temperature range suggests that the hydrocarbon chains do not undergo any conformational changes upon compression of the monolayer. However, the full width at half-maximum (fwhm) values of the asymmetric methylene stretching mode (nu(as)(CH(2))) are found to respond differently with changes in temperature. It is concluded that even though the trans/gauche ratio of the hydrocarbon chains remains virtually constant, the LE-LC phase transition upon compression of the monolayer is accompanied by a loss of the rotational freedom of the molecules.     

Highly chemo- and regioselective phosphitylation of unprotected 2′-deoxyribonucleosides

We have developed the chemo- and regioselective phosphitylation of unprotected 2′-deoxyribonucleosides by the use of di-tert-butyl N,N-diethylphosphoramidite, a sterically hindered phosphoramidite. Both N/O- and primary hydroxy group-selectivities were simultaneously achieved, and the selectivity for the 5′-hydroxy groups was up to 97% regardless of the base moiety of the 2′-deoxyribonucleosides. The 3′-O-isomers and the 5′-O-isomers were easily separated by silica gel column chromatography or crystallization to give the pure 2′-deoxyribonucleoside 5′-phosphites in moderate to good yields.     

A study of the alumina-silica gel adsorbent for the removal of silicic acid from geothermal water: increase in adsorption capacity of the adsorbent due to formation of amorphous aluminosilicate by adsorption of silicic acid

Two kinds of adsorbents (Si adsorbent and Al adsorbent) for the removal of silicic acid from geothermal water to retard the formation of silica scales were prepared using silicic acid contained in geothermal water. The Si adsorbent was prepared by evaporating geothermal water, and the Al adsorbent was prepared by evaporating geothermal water after the addition of aluminum chloride. The specific surface area of the Si adsorbent was small and it's adsorption capacity of silicic acid was low. Although the specific surface area of the Al adsorbent was also small, it was significantly increased by the adsorption of silicic acid and it's adsorption capacity was high. Based on the change in the local structure of aluminum ion by the adsorption of silicic acid, the Al adsorbent was considered to be silica particles covered with crystalline aluminum hydroxide. Moreover, it was concluded that the increase in the specific surface area of the Al adsorbent and the decrease in the zeta potential were due to the formation of an amorphous aluminosilicate with a large surface area and a negative charge (one 4-coordinated Al) by the reaction between aluminum ions and silicic acids.