Size determination of Acipenser ruthenus spermatozoa in different types of electron microscopy

In this study three types of scanning electron microscopes were used for the size determination of spermatozoa of sterlet Acipenser ruthenus – high vacuum scanning electron microscope (SEM, JEOL 6300), environmental scanning electron microscope (ESEM, Quanta 200 FEG), field emission scanning electron microscope (FESEM, JEOL 7401F) with cryoattachment Alto 2500 (Gatan) and transmission electron microscope (TEM, JEOL 1010). The use of particular microscopes was tied with different specimen preparation techniques. The aim of this study was to evaluate to what degree the type of used electron microscope can influence the size of different parts of spermatozoa. For high vacuum SEM the specimen was prepared using two slightly different procedures. After chemical fixation with 2.5% glutaraldehyde in 0.1 M phosphate buffer and post-fixation by 1% osmium tetroxide, the specimen was dehydrated by acetone series and dried either by critical point method or by means of t-butylalcohol. For ESEM fresh, unfixed material was used, which was dropped on microscopic copper grids. In FESEM working in cryo-mode the specimen was observed in a frozen state. Ultrathin sections from chemically fixed and Epon embedded specimens were prepared for TEM observation. Distinct parts of sterlet spermatozoa were measured in each microscope and the data obtained was statistically processed. Results confirmed that the classical chemical procedure of specimen preparation for SEM including critical point drying method led to a significant contraction of all measured values, which could deviate up to 30% in comparison with values measured on the fresh chemically untreated specimen in ESEM. Surprisingly sperm dimensions determinated on ultrathin sections by TEM are comparable with values obtained in ESEM or FESEM.     

Conformally Invariant Elliptic Liouville Equation and Its Symmetry-Preserving Discretization

The symmetry algebra of the real elliptic Liouville equation is an infinite-dimensional loop algebra with the simple Lie algebra o(3, 1) as its maximal finite-dimensional subalgebra. The entire algebra generates the conformal group of the Euclidean plane E₂. This infinite-dimensional algebra distinguishes the elliptic Liouville equation from the hyperbolic one with its symmetry algebra that is the direct sum of two Virasoro algebras. Following a previously developed discretization procedure, we present a difference scheme that is invariant under the group O(3, 1) and has the elliptic Liouville equation in polar coordinates as its continuous limit. The lattice is a solution of an equation invariant under O(3, 1) and is itself invariant under a subgroup of O(3, 1), namely, the O(2) rotations of the Euclidean plane.     

Modal-based fluid structure coupling in room acoustics considering non-deterministic properties

Nowadays fluid structure interaction methods gain more and more importance. For room acoustical problems the coupling to realistic boundary conditions, absorbers and reflectors, is still a remaining challenge in the optimization process for the frequency response of the acoustic volume. The following work will present a coupling method based on the Component Mode Synthesis and Hamilton's Principle for the steady state response of linear room acoustic problems. Therein realistic boundaries like absorbers are coupled with the help of their related frequency dependent impedances. For a more physical interpretation uncertain parameters are considered within the input data. Basic possibilistic and probabilistic concepts are applied on benchmark configurations to estimate the variation in frequency response functions from uncertain input data. (© 2010 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim)     

Configurational-Force-Based Adaptive FE Solver for a Phase Field Model of Fracture

The computational modeling of failure mechanisms in solids due to fracture based on sharp crack discontinuities suffers in situations with complex crack topologies. This can be overcome by diffusive crack modeling, based on the introduction of a crack phase field as outlined in [1, 2]. Following these formulations, we outline a thermodynamically consistent framework for phase field models of crack propagation in elastic solids, develop incremental variational principles and, as an extension to [1, 2], consider their numerical implementations by an efficient h-adaptive finite element method. A key problem of the phase field formulation is the mesh density, which is required for the resolution of the diffusive crack patterns. To this end, we embed the computational framework into an adaptive mesh refinement strategy that resolves the fracture process zones. We construct a configurational-force-based framework for h-adaptive finite element discretizations of the gradient-type diffusive fracture model. We develop a staggered computational scheme for the solution of the coupled balances in physical and material space. The balance in the material space is then used to set up indicators for the quality of the finite element mesh and accounts for a subsequent h-type mesh refinement. The capability of the proposed method is demonstrated by means of a numerical example. (© 2010 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim)     

Development of an Accurate Mass Retention Time Database for Untargeted Metabolomic Analysis and Its Application to Plasma and Urine Pediatric Samples

Liquid-chromatography coupled to high resolution mass spectrometry (LC-HRMS) is currently the method of choice for untargeted metabolomic analysis. The availability of established protocols to achieve a high confidence identification of metabolites is crucial. The aim of this work is to describe the workflow that we have applied to build an Accurate Mass Retention Time (AMRT) database using a commercial metabolite library of standards. LC-HRMS analysis was carried out using a Vanquish Horizon UHPLC system coupled to a Q-Exactive Plus Hybrid Quadrupole-Orbitrap Mass Spectrometer (Thermo Fisher Scientific, Milan, Italy). The fragmentation spectra, obtained with 12 collision energies, were acquired for each metabolite, in both polarities, through flow injection analysis. Several chromatographic conditions were tested to obtain a protocol that yielded stable retention times. The adopted chromatographic protocol included a gradient separation using a reversed phase (Waters Acquity BEH C18) and a HILIC (Waters Acquity BEH Amide) column. An AMRT database of 518 compounds was obtained and tested on real plasma and urine samples analyzed in data-dependent acquisition mode. Our AMRT library allowed a level 1 identification, according to the Metabolomics Standards Initiative, of 132 and 124 metabolites in human pediatric plasma and urine samples, respectively. This library represents a starting point for future metabolomic studies in pediatric settings.     

Phase Field Modeling of Brittle and Ductile Fracture

The phase field modeling of brittle fracture was a topic of intense research in the last few years and is now well-established. We refer to the work [1-3], where a thermodynamically consistent framework was developed. The main advantage is that the phase-field-type diffusive crack approach is a smooth continuum formulation which avoids the modeling of discontinuities and can be implemented in a straightforward manner by multi-field finite element methods. Therefore complex crack patterns including branching can be resolved easily. In this paper, we extend the recently outlined phase field model of brittle crack propagation [1-3] towards the analysis of ductile fracture in elastic-plastic solids. In particular, we propose a formulation that is able to predict the brittle-to-ductile failure mode transition under dynamic loading that was first observed in experiments by Kalthoff and Winkler [4]. To this end, we outline a new thermodynamically consistent framework for phase field models of crack propagation in ductile elastic-plastic solids under dynamic loading, develop an incremental variational principle and consider its robust numerical implementation by a multi-field finite element method. The performance of the proposed phase field formulation of fracture is demonstrated by means of the numerical simulation of the classical Kalthoff-Winkler experiment that shows the dynamic failure mode transition. (© 2013 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim)     

Critical evaluation of microextraction pretreatment techniques – Part 1: Single drop and sorbent‐based techniques

Sample pretreatment techniques or preconcentration constitute a very important step before the analysis of environmental, clinical, pharmaceutical, and other complex samples. Thanks to extraction techniques it is possible to achieve higher method sensitivities and selectivities. Miniaturization microextraction methods make them more environmentally friendly and only small amounts of samples are required. In the past 30 years, a number of microextraction methods have been developed and used and are documented in thousands of articles. Many reviews have been written focusing on their use in specified professional fields or on the latest trends. Unfortunately, no uniform nomenclature has been introduced for these methods. Therefore, this review attempts to classify all the essential microextraction techniques and describes their advantages, disadvantages, and the latest innovations. The methods are divided into two main groups: single drop and sorbent‐based techniques according to the type of extraction phase.     

Magic angles and cross-hatching instability in hydrogel fracture

The full 2D analysis of roughness profiles of fracture surfaces resulting from quasistatic crack propagation in gelatin gels reveals an original behavior characterized by (i) strong anisotropy with maximum roughness at V-independent symmetry-preserving angles and (ii) a subcritical instability leading, below a critical velocity, to a cross-hatched regime due to straight macrosteps drifting at the same magic angles and nucleated on crack-pinning network inhomogeneities. Step height values are determined by the width of the strain-hardened zone, governed by the elastic crack blunting characteristic of soft solids with breaking stresses much larger than low strain moduli.     

Analysis of potential toxic elements in soil of the Czech dump-side

Journal of Radioanalytical and Nuclear Chemistry - The mass fractions of V, Cr, Co, Ni, Cu, Zn, As, Br, Mo, Cd, W, Hg, and Pb in soil of the Czech dump-side were measured by instrumental neutron...     

Two-stage weighted PROMETHEE II with results’ visualization

Central European Journal of Operations Research - Multicriteria decision-making methods are widely spread and used to assist the decision-makers to resolve problems. Many of the methods are simple...