How much can an intermediate state influence competing reactive pathways?

A molecule undergoing reaction may form a short-lived intermediate. Under certain conditions, the rate at which the reaction proceeds toward the product state via the intermediate may exceed that of a simple, direct path. The competition of two alternative reactive pathways is analyzed here in terms of a stochastic model. The approach allows one to diagnose this competition as a function of the energy of the intermediate relative to the barrier heights of the potential surface and values of the reactive vibrational modes. The result has applications to a variety of problems in chemical physics, ranging from the "lock-and-key" mechanism for the enzymatic activity to control of temporal evolution of complex systems by optimal laser fields.     

Non-extractive procedure followed by LC/APCI MS/MS analysis of trimetazidine in plasma samples for assessing bioequivalence of immediate/modified release formulations

Trimetazidine and internal standard [1-(2,4,5-trimethoxybenzyl)piperazine] were isolated from plasma by protein precipitation with trifluoroacetic acid. The neutralized supernatant was separated on a C(8) column with methanol-aqueous 0.11% triethylamine adjusted to pH 3.3 with formic acid (1:4, v/v) at a flow rate of 0.85 mL/min. The separation was achieved within 8 min and the column ef fluent was transferred into an ion trap analyzer via an atmospheric pressure chemical ionization interface. The mass analyzer was used in the selected reaction monitoring mode, to enhance detection selectivity. The method was fully validated with a quantitation limit for trimetazidine of 1.5 ng/mL. The method was successfully applied to assess bioequivalence of two immediate and two modified commercially available pharmaceutical formulations containing 20 and 35 mg of trimetazidine, respectively.     

Electron spin resonance spectra of polymers during fluorination

ESR spectra characteristic of peroxy radicals appeared rapidly in all of eleven hydrogen-containing polymers examined when treated with dilute fluorine. These radicals presumably result from the reaction of hydrocarbon and fluorocarbon radicals, existing at undetectably low steady-state concentrations, with the oxygen impurity content of commercial fluorine. In poly(vinylidene fluoride) films of thickness 11 and 58 μm the radical contents were nearly proportional to surface area rather than volume, in agreement with earlier reports of a shallow depth of penetration. Some polymers exhibited also or exclusively a broad spectral component, varying in character with the polymer; examples are polystyrene, polyethylene, poly (vinyl chloride), poly(vinylidene chloride), polyoctafluoropentadiene, polyhexafluoropropene, and a fluorinated graphite. The broad spectral component did not react with ordinary radical scavengers such as propylene and oxygen, and is probably not due to a fluorocarbon radical but to unknown transition metal fluorides.     

SERS assessment of the cancer-specific methylation pattern of genomic DNA: towards the detection of acute myeloid leukemia in patients undergoing hematopoietic stem cell transplantation

In this label-free surface-enhanced Raman scattering (SERS) study of genomic DNA, we demonstrate that the cancer-specific DNA methylation pattern translates into specific spectral differences. Thus, DNA extracted from an acute myeloid leukemia (AML) cell line presented a decreased intensity of the 1005 cm⁻¹ band of 5-methylcytosine compared to normal DNA, in line with the well-described hypomethylation of cancer DNA. The unique methylation pattern of cancer DNA also influences the DNA adsorption geometry, resulting in higher adenine SERS intensities for cancer DNA. The possibility of detecting cancer DNA based on its SERS spectrum was validated on peripheral blood genomic DNA samples from n = 17 AML patients and n = 17 control samples, yielding an overall classification of 82% based on the 1005 cm⁻¹ band of 5-methylcytosine. By demonstrating the potential of SERS in assessing the methylation status in the case of real-life DNA samples, the study paves the way for novel methods of diagnosing cancer.

Graphical abstract

     

On some algorithmic problems regarding the hairpin completion

We consider a few algorithmic problems regarding the hairpin completion. The first problem we consider is the membership problem of the hairpin and iterated hairpin completion of a language. We propose an O(nf(n)) and O(n²f(n)) time recognition algorithm for the hairpin completion and iterated hairpin completion, respectively, of a language recognizable in O(f(n)) time. We show that the n factor is not needed in the case of hairpin completion of regular and context-free languages. The n² factor is not needed in the case of iterated hairpin completion of context-free languages, but it is reduced to n in the case of iterated hairpin completion of regular languages. We then define the hairpin completion distance between two words and present a cubic time algorithm for computing this distance. A linear time algorithm for deciding whether or not the hairpin completion distance with respect to a given word is connected is also discussed. Finally, we give a short list of open problems which appear attractive to us.     

On local representations of von Neumann algebras

We prove that every bounded, linear, 2-local Hilbert space representation of a von Neumann algebra is a representation. In contrast, 1-local representations may fail to be multiplicative, even at the 2 by 2 matrix algebra level.

     

Capillary electrophoretic analysis of sulfur and cyanicides speciation during cyanidation of gold complex sulfidic ores

A capillary electrophoretic protocol for the separation and quantification of the most important species potentially liberated during the cyanidation of gold sulfide‐rich ores was accomplished in this study. The separation of 11 ions: S₂O₃^2–, Cu(CN)₃^2–, Fe(CN)₆^4–, Fe(CN)₆^3–, SCN^–, Au(CN)₂^–, Ag(CN)₂^–, SO₄^2–, OCN^–, SO₃^2–, and HS^– was achieved using an indirect UV detection method. The robustness of the analytical protocol was tested by analyzing ions speciation during the cyanidation of two gold sulfide‐rich ores. The 1‐h cyanidation of the two ores released up to six complexes into solution: S₂O₃^2–, Cu(CN)₃^2–, SCN^–, Fe(CN)₆^4–, OCN^–, and SO₄^2–. The mineralogy of the ore was found to influence directly the nature and the amount of the dissolved species. Conserving the cyanidation solution for 72 h after sampling resulted in 96% total sulfur recovery. These results allow us to conclude that the analytical protocol developed in this study can become very useful for the optimization of precious‐metals cyanidation plants.     

Direct observation of nondiffusive motion of a Brownian particle

The thermal position fluctuations of a single micron-sized sphere immersed in a fluid were recorded by optical trapping interferometry with nanometer spatial and microsecond temporal resolution. We find, in accord with the theory of Brownian motion including hydrodynamic memory effects, that the transition from ballistic to diffusive motion is delayed to significantly longer times than predicted by the standard Langevin equation. This delay is a consequence of the inertia of the fluid. On the shortest time scales investigated, the sphere's inertia has a small, but measurable, effect.     

Spatiotemporal networks in addressable excitable media

Spatiotemporal networks are studied in a photosensitive Belousov-Zhabotinsky medium that allows both local and nonlocal transmission of excitation. Local transmission occurs via propagating excitation waves, while nonlocal transmission takes place by nondiffusive jumps to destination sites linked to excited sites in the medium. Static, dynamic, and domain link networks are experimentally and computationally characterized. Transitions to synchronized behavior are exhibited with increasing link density, and power-law relations are observed for first-coverage time as a function of link probability.