Constraints on cosmological parameters from the analysis of the cosmic lens all sky survey radio-selected gravitational lens statistics

We derive constraints on cosmological parameters and the properties of the lensing galaxies from gravitational lens statistics based on the final Cosmic Lens All Sky Survey data. For a flat universe with a classical cosmological constant, we find that the present matter fraction of the critical density is Omega(m)=0.31(+0.27)(-0.14) (68%)+0.12-0.10 (syst). For a flat universe with a constant equation of state for dark energy w=p(x)(pressure)/rho(x)(energy density), we find w<-0.55(+0.18)(-0.11) (68%).     

Synthesis and Extended Activity of Triazole‐Containing Macrocyclic Protease Inhibitors

Peptide‐derived protease inhibitors are an important class of compounds with the potential to treat a wide range of diseases. Herein, we describe the synthesis of a series of triazole‐containing macrocyclic protease inhibitors pre‐organized into a β‐strand conformation and an evaluation of their activity against a panel of proteases. Acyclic azido–alkyne‐based aldehydes are also evaluated for comparison. The macrocyclic peptidomimetics showed considerable activity towards calpain II, cathepsin L and S, and the 20S proteasome chymotrypsin‐like activity. Some of the first examples of highly potent macrocyclic inhibitors of cathepsin S were identified. These adopt a well‐defined β‐strand geometry as shown by NMR spectroscopy, X‐ray analysis, and molecular docking studies.     

Regular scanning tunneling microscope tips can be intrinsically chiral

We report our discovery that regular scanning tunneling microscope tips can themselves be chiral. This chirality leads to differences in electron tunneling efficiencies through left- and right-handed molecules, and, when using the tip to electrically excite molecular rotation, large differences in rotation rate were observed which correlated with molecular chirality. As scanning tunneling microscopy is a widely used technique, this result may have unforeseen consequences for the measurement of asymmetric surface phenomena in a variety of important fields.     

Solution structure of a DNA duplex containing the potent anti-poxvirus agent cidofovir

Cidofovir (1(S)-[3-hydroxy-2-(phosphonomethoxy)propyl]cytosine, CDV) is a potent inhibitor of orthopoxvirus DNA replication. Prior studies have shown that, when CDV is incorporated into a growing primer strand, it can inhibit both the 3'-to-5' exonuclease and the 5'-to-3' chain extension activities of vaccinia virus DNA polymerase. This drug can also be incorporated into DNA, creating a significant impediment to trans-lesion DNA synthesis in a manner resembling DNA damage. CDV and deoxycytidine share a common nucleobase, but CDV lacks the deoxyribose sugar. The acyclic phosphonate bears a hydroxyl moiety that is equivalent to the 3'-hydroxyl of dCMP and permits CDV incorporation into duplex DNA. To study the structural consequences of inserting CDV into DNA, we have used (1)H NMR to solve the solution structures of a dodecamer DNA duplex containing a CDV molecule at position 7 and of a control DNA duplex. The overall structures of both DNA duplexes were found to be very similar. We observed a decrease of intensity (>50%) for the imino protons neighboring the CDV (G6, T8) and the cognate base G18 and a large chemical shift change for G18. This indicates higher proton exchange rates for this region, which were confirmed using NMR-monitored melting experiments. DNA duplex melting experiments monitored by circular dichroism revealed a lower T(m) for the CDV DNA duplex (46 °C) compared to the control (58 °C) in 0.2 M salt. Our results suggest that the CDV drug is well accommodated and stable within the dodecamer DNA duplex, but the stability of the complex is less than that of the control, suggesting increased dynamics around the CDV.     

Combined Two‐Photon Excitation and d→f Energy Transfer in a Water‐Soluble IrIII/EuIII Dyad: Two Luminescence Components from One Molecule for Cellular Imaging

The first example of cell imaging using two independent emission components from a dinuclear d/f complex is reported. A water‐stable, cell‐permeable Ir^III/Eu^III dyad undergoes partial Ir→Eu energy transfer following two‐photon excitation of the Ir unit at 780 nm. Excitation in the near‐IR region generated simultaneously green Ir‐based emission and red Eu‐based emission from the same probe. The orders‐of‐magnitude difference in their timescales (Ir ca. μs; Eu ca. 0.5 ms) allowed them to be identified by time‐gated detection. Phosphorescence lifetime imaging microscopy (PLIM) allowed the lifetime of the Ir‐based emission to be measured in different parts of the cell. At the same time, the cells are simultaneously imaged by using the Eu‐based emission component at longer timescales. This new approach to cellular imaging by using dual d/f emitters should therefore enable autofluorescence‐free sensing of two different analytes, independently, simultaneously and in the same regions of a cell.     

Effect of oxidation state and coordination with Hg(II) on the electronic spectra of an anthraquinone–rhodamine sensor

ABSTRACT

In this study, a computational examination of the electronic transitions and through-space energy transfer processes lends insight into the experimental electronic spectra of a redox-sensitive rhodamine–anthraquinone dyad. Electronic transitions were calculated using density functional theory (DFT) and time-dependent DFT (TDDFT) based on models optimised from single-crystal X-ray diffraction (XRD) ion positions. DFT calculations were performed on gas-phase models using the Vienna Ab Initio Software Package (VASP) with the functional developed by Perdew, Burke, and Ernzerhof (PBE) on a basis set of plane waves. Using the DFT results, select transitions were evaluated based on a dipole–dipole coupling mechanism to find the Förster resonance energy transfer coupling, the square of which is approximately proportional to the rate of energy transfer between the donor and the acceptor. Electronic transitions during the relaxation of charge carriers are also investigated using nonadiabatic molecular dynamics. In order to investigate the transitions contributing to key peaks in the experimental absorbance spectra, TDDFT calculations were performed in Gaussian 09 with the B3LYP functional on the sensor in solution phase, which is simulated using a polarisable continuum model (PCM). The computed electron transfer process from the excited rhodamine to the quinone correlates better with the experimental data than does the computed Förster resonance energy transfer (FRET) process. This computed electron transfer process is faster than the radiative lifetime of the fluorescent state, which collectively suggests that the charge transfer process quenches fluorescence. These results support the observation that fluorescence is more prominent in the oxidised sensor than in the reduced sensor.     

NMR studies of the dynamics of a bifunctional rhodamine probe attached to troponin C

Fluorescence polarization measurements of bifunctional rhodamine (BR) probes provide a powerful approach to determine the in situ orientation of proteins within ordered complexes such as muscle fibers. For accurate interpretation of fluorescence measurements, it is important to understand the probe dynamics relative to the protein to which it is attached. We previously determined the structure of the N-domain of chicken skeletal troponin C, BR-labeled on the C helix, in complex with the switch region of troponin I, and demonstrated that the probe does not perturb the structure or dynamics of the protein. In this study, the motion of the fluorescence label relative to the protein has been characterized using NMR relaxation measurements of 13C-labeled methyl groups on the BR probe and 15N-labeled backbone amides of the protein. Probe dynamics were monitored using off-resonance 13C-R(1rho), 13C-R(1) and {1H}-13C NOE at magnetic field strengths of 500, 600, and 800 MHz. Relaxation data were interpreted in terms of the overall rotational correlation time of the protein and a two-time scale model for internal motion of the BR methyl groups, using a numerical optimization with Monte Carlo parameter error estimation. The analysis yields a 1.5 +/- 0.4 ps correlation time for rotation around the three-fold methyl symmetry axis, and a 0.8 +/- 0.4 ns rotational correlation time for reorientation of the 13C-14N bond with an associated S2s of 0.79 +/- 0.03. Order parameters of the backbone NH vectors in the helix to which the probe is attached average S2 approximately 0.85, implying that the amplitude of independent reorientation of the BR probe is small in magnitude, consistent with results from fluorescence polarization measurements in reconstituted muscle fibers.     

Long-range electronic interactions at a high temperature: bromine adatom islands on Cu(111)

Long-range electronic interactions between Br adatom islands, which are formed at approximately 600 K, on Cu(111) are mediated by substrate surface-state electrons at that elevated temperature. Using scanning tunneling microscopy at 4 K, we have quantified nearest neighbor island separations and found favored spacings to be half-multiples of the Fermi wavelength of Cu(111). The strong interaction potential and decay length of the interisland interactions are discussed in terms of the interaction of Br with the substrate surface state.